Wall clock time and date at job start Tue Mar 31 2020 11:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 C 1.50703 * 109.46737 * 179.97438 * 3 2 1 5 5 C 1.33085 * 119.99686 * 174.85751 * 4 3 2 6 6 C 1.46949 * 120.00260 * 5.26756 * 5 4 3 7 7 O 1.21538 * 119.99834 * 5.52141 * 6 5 4 8 8 O 1.34801 * 120.00119 * 185.52105 * 6 5 4 9 9 C 1.45196 * 116.99752 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.46820 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00448 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.39235 * 120.00307 * 176.04096 * 12 10 9 14 14 C 1.39484 * 119.83409 * 215.14852 * 13 12 10 15 15 C 1.36376 * 120.16780 * 179.75759 * 14 13 12 16 16 C 1.40862 * 119.82787 * 0.50919 * 15 14 13 17 17 C 1.41155 * 120.16343 * 179.71951 * 16 15 14 18 18 H 1.08003 * 120.00367 * 213.95915 * 17 16 15 19 19 C 1.39908 * 120.00095 * 33.95865 * 17 16 15 20 20 N 1.30879 * 119.99688 * 5.77918 * 19 17 16 21 21 Si 1.86791 * 120.00218 * 185.77613 * 19 17 16 22 22 H 1.48497 * 109.47253 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47419 * 120.00327 * 21 19 17 24 24 H 1.48508 * 109.47261 * 239.99977 * 21 19 17 25 25 C 1.40872 * 119.67501 * 359.74237 * 16 15 14 26 26 C 1.36370 * 119.82507 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47222 * 300.00519 * 1 2 3 29 29 H 1.09006 * 109.46356 * 60.00735 * 1 2 3 30 30 H 1.08997 * 109.47222 * 239.99480 * 2 1 3 31 31 H 1.09006 * 109.46356 * 119.99264 * 2 1 3 32 32 H 1.08997 * 109.47587 * 59.99704 * 3 2 1 33 33 H 1.08998 * 109.47199 * 299.99147 * 3 2 1 34 34 H 1.07998 * 120.00354 * 354.58457 * 4 3 2 35 35 H 1.08002 * 119.99589 * 185.27218 * 5 4 3 36 36 H 1.09000 * 109.47723 * 300.00280 * 9 8 6 37 37 H 1.08997 * 109.47206 * 60.00404 * 9 8 6 38 38 H 0.97003 * 119.99522 * 356.03489 * 12 10 9 39 39 H 1.07997 * 119.91263 * 0.02562 * 14 13 12 40 40 H 1.08000 * 120.08231 * 180.24960 * 15 14 13 41 41 H 0.97001 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.08318 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.91075 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2125 2.5903 -0.1026 6 6 3.4824 3.8657 -0.1005 7 8 2.2831 3.8790 0.0958 8 8 4.1429 5.0208 -0.3164 9 6 3.3576 6.2419 -0.3009 10 6 4.2587 7.4219 -0.5593 11 8 5.4459 7.2506 -0.7384 12 7 3.7454 8.6677 -0.5903 13 6 4.5888 9.7645 -0.7467 14 6 4.2969 10.9628 -0.0951 15 6 5.1210 12.0398 -0.2395 16 6 6.2634 11.9431 -1.0579 17 6 7.1180 13.0552 -1.2171 18 1 7.6184 13.2212 -2.1597 19 6 7.3167 13.9427 -0.1539 20 7 6.8021 13.6820 1.0209 21 14 8.3164 15.4994 -0.4111 22 1 8.7839 15.5606 -1.8192 23 1 7.4709 16.6847 -0.1189 24 1 9.4889 15.4911 0.5003 25 6 6.5487 10.7312 -1.7169 26 6 5.7179 9.6613 -1.5590 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 4.0870 0.5113 0.0893 35 1 5.2891 2.5845 -0.1879 36 1 2.5931 6.1923 -1.0763 37 1 2.8807 6.3548 0.6727 38 1 2.7884 8.8002 -0.5037 39 1 3.4185 11.0365 0.5288 40 1 4.8958 12.9657 0.2688 41 1 6.9402 14.2971 1.7581 42 1 7.4226 10.6499 -2.3462 43 1 5.9351 8.7317 -2.0640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051418971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:48 Heat of formation + Delta-G solvation = -107.902482 kcal Electronic energy + Delta-G solvation = -24544.181035 eV Core-core repulsion = 20746.749218 eV Total energy + Delta-G solvation = -3797.431817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76378 -41.02035 -39.14093 -37.95378 -36.42824 -36.17792 -34.78677 -33.46162 -31.59457 -31.32293 -29.79371 -27.97924 -26.58606 -24.30199 -23.41380 -22.63374 -22.28370 -21.40565 -20.66446 -19.28302 -18.94025 -18.53293 -17.77999 -17.69720 -17.02929 -16.77903 -16.32933 -15.94726 -15.68353 -15.47049 -15.06379 -14.99143 -14.50107 -14.23583 -14.17728 -13.95578 -13.68954 -13.64442 -13.45206 -13.29820 -13.23305 -12.85997 -12.80786 -12.49379 -12.36087 -11.90087 -11.81034 -11.76644 -11.62505 -11.41580 -11.24570 -11.18653 -10.89021 -10.66154 -10.44910 -9.49855 -8.80563 -8.56129 -6.33560 0.13996 0.73008 1.10798 1.29549 1.39581 1.40304 1.54823 1.67039 1.90342 2.23685 2.45765 2.77846 3.55178 3.67009 3.70006 3.86867 4.01954 4.04521 4.13197 4.21567 4.37546 4.49074 4.52746 4.56367 4.78132 4.88329 4.89556 5.03230 5.08697 5.11546 5.15689 5.20242 5.27529 5.28956 5.35580 5.38635 5.43232 5.59258 5.65677 5.84769 5.97487 6.08698 6.35901 6.55653 6.64951 6.69527 6.93666 6.96259 7.25546 8.40422 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.047319 B = 0.001833 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.584651 B =15269.755845 C =15504.176213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.020 4.020 5 C -0.226 4.226 6 C 0.487 3.513 7 O -0.525 6.525 8 O -0.351 6.351 9 C 0.062 3.938 10 C 0.500 3.500 11 O -0.558 6.558 12 N -0.635 5.635 13 C 0.015 3.985 14 C -0.112 4.112 15 C -0.157 4.157 16 C 0.074 3.926 17 C -0.499 4.499 18 H 0.074 0.926 19 C 0.030 3.970 20 N -0.839 5.839 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.262 1.262 24 H -0.269 1.269 25 C -0.223 4.223 26 C -0.094 4.094 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.422 0.578 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.286 0.714 42 H 0.096 0.904 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.604 -21.907 0.312 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.141 4.141 4 C -0.038 4.038 5 C -0.245 4.245 6 C 0.336 3.664 7 O -0.418 6.418 8 O -0.267 6.267 9 C -0.015 4.015 10 C 0.287 3.713 11 O -0.436 6.436 12 N -0.282 5.282 13 C -0.078 4.078 14 C -0.132 4.132 15 C -0.177 4.177 16 C 0.072 3.928 17 C -0.530 4.530 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.467 5.467 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.187 1.187 24 H -0.194 1.194 25 C -0.243 4.243 26 C -0.114 4.114 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.191 0.809 35 H 0.172 0.828 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.260 0.740 39 H 0.147 0.853 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.156 -21.935 0.489 24.614 hybrid contribution 0.165 1.139 0.052 1.152 sum -10.991 -20.796 0.540 23.528 Atomic orbital electron populations 1.21781 0.95954 1.02009 1.01566 1.21639 0.96101 0.95279 1.03100 1.21060 0.92009 0.97920 1.03068 1.24376 0.96681 0.97841 0.84935 1.22100 1.01897 0.88033 1.12492 1.22275 0.86052 0.85253 0.72845 1.90834 1.16194 1.87927 1.46799 1.86664 1.42295 1.15202 1.82536 1.22651 0.92206 0.79974 1.06678 1.20714 0.88689 0.84648 0.77265 1.90724 1.18212 1.85470 1.49188 1.42641 1.10784 1.03431 1.71316 1.17238 0.97141 0.88242 1.05206 1.20529 1.00690 0.92518 0.99479 1.20923 0.94751 0.98512 1.03495 1.18034 0.91563 0.92195 0.91043 1.19778 1.25470 1.08134 0.99596 0.90809 1.26725 0.96093 1.01588 0.93813 1.69853 1.38492 1.36433 1.01912 0.85077 0.78006 0.76633 0.79460 1.18340 1.18667 1.19427 1.20907 1.01428 0.93599 1.08400 1.20522 0.95451 0.97540 0.97871 0.91761 0.93175 0.93261 0.90845 0.90663 0.90222 0.91016 0.80917 0.82845 0.85600 0.85887 0.73972 0.85323 0.87204 0.90322 0.88591 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.14 5.88 30.60 0.18 -0.96 16 3 C -0.10 -1.43 3.79 29.85 0.11 -1.31 16 4 C -0.02 -0.23 9.65 24.53 0.24 0.00 16 5 C -0.23 -3.78 10.15 23.40 0.24 -3.54 16 6 C 0.49 11.48 7.84 70.10 0.55 12.03 16 7 O -0.53 -13.11 12.98 19.71 0.26 -12.86 16 8 O -0.35 -9.85 9.77 -50.74 -0.50 -10.34 16 9 C 0.06 1.50 5.96 71.24 0.42 1.92 16 10 C 0.50 16.87 7.74 87.66 0.68 17.55 16 11 O -0.56 -24.76 13.94 15.76 0.22 -24.54 16 12 N -0.63 -20.54 5.30 -303.11 -1.61 -22.15 16 13 C 0.01 0.65 6.30 38.57 0.24 0.89 16 14 C -0.11 -4.95 9.90 22.14 0.22 -4.73 16 15 C -0.16 -8.12 8.57 22.48 0.19 -7.93 16 16 C 0.07 4.10 5.51 -21.28 -0.12 3.98 16 17 C -0.50 -27.53 9.03 23.39 0.21 -27.32 16 18 H 0.07 3.95 7.85 -2.91 -0.02 3.92 16 19 C 0.03 1.56 5.31 85.24 0.45 2.01 16 20 N -0.84 -44.50 10.94 21.82 0.24 -44.26 16 21 Si 0.99 39.03 29.56 68.60 2.03 41.05 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 24 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 25 C -0.22 -11.75 9.74 22.48 0.22 -11.53 16 26 C -0.09 -4.57 8.61 22.13 0.19 -4.38 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 1.38 7.11 -2.39 -0.02 1.36 16 33 H 0.07 1.23 7.39 -2.39 -0.02 1.21 16 34 H 0.17 0.72 7.99 -2.91 -0.02 0.70 16 35 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.42 9.55 8.82 -92.71 -0.82 8.74 16 39 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 40 H 0.11 5.88 6.44 -2.91 -0.02 5.87 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.11 5.17 6.25 -2.91 -0.02 5.16 16 Total: -1.00 -72.05 368.97 5.59 -66.46 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.21 Total: 30.84 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.74 Total: -24.21 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -1.37 Total: -66.41 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.02 Total: -47.74 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.05 kcal Total: -72.05 5.59 -66.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051418971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.444 kcal (2) G-P(sol) polarization free energy of solvation -72.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds