Wall clock time and date at job start Tue Mar 31 2020 12:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47361 * 2 1 4 4 C 1.53006 * 109.47088 * 119.99881 * 2 1 3 5 5 H 1.09001 * 109.47179 * 300.00219 * 4 2 1 6 6 O 1.42902 * 109.47450 * 180.02562 * 4 2 1 7 7 C 1.35696 * 117.00075 * 99.43189 * 6 4 2 8 8 C 1.38651 * 120.15043 * 354.31793 * 7 6 4 9 9 C 1.38104 * 120.09265 * 179.97438 * 8 7 6 10 10 C 1.38520 * 120.39116 * 359.96130 * 9 8 7 11 11 C 1.37817 * 120.29575 * 0.02562 * 10 9 8 12 12 C 1.39710 * 119.90286 * 0.02562 * 11 10 9 13 13 C 1.43205 * 120.19415 * 179.97438 * 12 11 10 14 14 N 5.66765 * 160.75715 * 148.65843 * 2 1 3 15 15 C 1.50705 * 109.47151 * 59.99954 * 4 2 1 16 16 O 1.20829 * 119.99998 * 119.99929 * 15 4 2 17 17 O 1.34231 * 119.99718 * 300.00361 * 15 4 2 18 18 C 1.45202 * 116.99428 * 179.97438 * 17 15 4 19 19 C 1.53003 * 109.46605 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46748 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00577 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99693 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99727 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 120.00216 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47370 * 89.99941 * 24 22 20 26 26 H 1.48499 * 109.47173 * 209.99871 * 24 22 20 27 27 H 1.48502 * 109.47184 * 329.99638 * 24 22 20 28 28 H 1.09001 * 109.47289 * 299.99968 * 1 2 3 29 29 H 1.08998 * 109.46705 * 60.00083 * 1 2 3 30 30 H 1.08999 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47335 * 239.99540 * 2 1 3 32 32 H 1.09001 * 109.47168 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47143 * 299.99649 * 3 2 1 34 34 H 1.09001 * 109.46893 * 59.99789 * 3 2 1 35 35 H 1.07999 * 119.95111 * 359.97438 * 8 7 6 36 36 H 1.07998 * 119.80263 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.84757 * 179.74629 * 10 9 8 38 38 H 1.08007 * 120.04916 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47347 * 299.99681 * 18 17 15 40 40 H 1.09001 * 109.47097 * 60.00020 * 18 17 15 41 41 H 1.08999 * 109.47146 * 299.99974 * 19 18 17 42 42 H 1.09001 * 109.47238 * 60.00276 * 19 18 17 43 43 H 0.97003 * 120.00034 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 8 3.4690 -0.7208 1.2497 7 6 4.0846 0.2132 2.0179 8 6 3.3372 1.1859 2.6643 9 6 3.9649 2.1355 3.4463 10 6 5.3424 2.1242 3.5920 11 6 6.1008 1.1646 2.9570 12 6 5.4787 0.1987 2.1621 13 6 6.2608 -0.8010 1.4989 14 7 6.8810 -1.5953 0.9716 15 6 1.5376 -2.1421 1.2493 16 8 2.3228 -3.0605 1.2494 17 8 0.2179 -2.3873 1.2493 18 6 -0.1937 -3.7798 1.2487 19 6 -1.7216 -3.8598 1.2494 20 6 -2.1489 -5.3050 1.2495 21 1 -1.4052 -6.0881 1.2487 22 6 -3.4895 -5.6275 1.2495 23 7 -3.8623 -6.8887 1.2490 24 14 -4.7759 -4.2732 1.2487 25 1 -5.1167 -3.9149 -0.1516 26 1 -5.9960 -4.7490 1.9488 27 1 -4.2379 -3.0789 1.9483 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2628 1.2009 2.5561 36 1 3.3783 2.8912 3.9473 37 1 5.8245 2.8735 4.2024 38 1 7.1746 1.1597 3.0730 39 1 0.1960 -4.2735 0.3585 40 1 0.1961 -4.2742 2.1385 41 1 -2.1110 -3.3661 2.1398 42 1 -2.1118 -3.3652 0.3598 43 1 -4.8055 -7.1156 1.2494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052385982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:45 Heat of formation + Delta-G solvation = -70.700575 kcal Electronic energy + Delta-G solvation = -26144.110349 eV Core-core repulsion = 22348.291728 eV Total energy + Delta-G solvation = -3795.818622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.39601 -40.03420 -38.23082 -36.47569 -36.31544 -35.45490 -33.35527 -31.82030 -30.95467 -30.69649 -28.29425 -27.26403 -25.22972 -24.33965 -23.00364 -21.77771 -20.72392 -20.49510 -19.78990 -18.14645 -17.64707 -17.00525 -16.62068 -16.40882 -15.99036 -15.54792 -15.49829 -14.90239 -14.43087 -14.26710 -14.10834 -13.64181 -13.51443 -13.36550 -13.19826 -12.97678 -12.89250 -12.74704 -12.50737 -12.44645 -12.28099 -12.02988 -11.76451 -11.65035 -11.42425 -11.31760 -11.00292 -10.83257 -10.71303 -10.59280 -10.03929 -9.94077 -9.77636 -9.48876 -9.40129 -8.71488 -8.67144 -6.17189 -4.19030 0.38151 0.84877 2.06232 2.27271 2.56429 2.69238 3.20679 3.23463 3.31215 3.33839 3.51552 3.64226 4.18038 4.26536 4.33538 4.33680 4.43505 4.63242 4.72342 4.82294 4.85957 4.96509 5.01930 5.15975 5.23179 5.28164 5.44832 5.55911 5.65366 5.73473 5.74968 5.82166 5.86928 5.88396 5.91995 5.98901 6.13405 6.31118 6.40046 6.63112 6.75716 7.08274 7.13846 7.40013 7.56446 7.93538 8.34766 8.84572 9.41643 10.95393 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002903 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.052648 B = 9644.286212 C =10248.127960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.151 4.151 4 C 0.093 3.907 5 H 0.118 0.882 6 O -0.278 6.278 7 C 0.180 3.820 8 C -0.214 4.214 9 C -0.047 4.047 10 C -0.159 4.159 11 C -0.033 4.033 12 C -0.059 4.059 13 C 0.257 3.743 14 N -0.411 5.411 15 C 0.454 3.546 16 O -0.488 6.488 17 O -0.348 6.348 18 C 0.079 3.921 19 C -0.007 4.007 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.882 3.118 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.266 25.774 3.764 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.125 4.125 3 C -0.208 4.208 4 C 0.035 3.965 5 H 0.135 0.865 6 O -0.189 6.189 7 C 0.131 3.869 8 C -0.233 4.233 9 C -0.065 4.065 10 C -0.177 4.177 11 C -0.053 4.053 12 C -0.063 4.063 13 C -0.058 4.058 14 N -0.086 5.086 15 C 0.295 3.705 16 O -0.374 6.374 17 O -0.265 6.265 18 C 0.007 3.993 19 C -0.044 4.044 20 C -0.567 4.567 21 H 0.094 0.906 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.708 3.292 25 H -0.200 1.200 26 H -0.212 1.212 27 H -0.187 1.187 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.345 23.920 2.810 28.557 hybrid contribution -1.116 0.676 0.264 1.331 sum 14.229 24.595 3.074 28.580 Atomic orbital electron populations 1.22085 0.92152 1.05279 1.02378 1.21516 0.97968 0.96653 0.96360 1.22010 1.01422 0.94557 1.02802 1.22148 0.79101 0.92447 1.02778 0.86456 1.86175 1.19730 1.51397 1.61631 1.18993 0.90636 0.87988 0.89262 1.21383 1.01064 0.97705 1.03120 1.21196 0.94734 0.96331 0.94277 1.21020 0.93860 1.00280 1.02568 1.21053 1.00429 0.91426 0.92396 1.15306 0.88229 0.97518 1.05217 1.25353 0.93574 0.93175 0.93686 1.81291 1.09368 1.09132 1.08829 1.22921 0.82430 0.90894 0.74278 1.90717 1.56978 1.46162 1.43538 1.86529 1.22813 1.34423 1.82748 1.23513 0.98461 0.75239 1.02121 1.19627 0.88125 0.98771 0.97909 1.20832 0.93361 0.89941 1.52589 0.90647 1.24942 0.98433 0.95522 0.94100 1.69896 1.16770 1.16801 1.49888 0.86748 0.81064 0.82623 0.78742 1.20029 1.21163 1.18733 0.92058 0.91654 0.89154 0.89406 0.92198 0.91433 0.91933 0.83750 0.84704 0.84651 0.84217 0.91466 0.91487 0.95310 0.95738 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.67 37.16 0.32 -1.31 16 2 C -0.11 -1.06 2.71 -90.62 -0.25 -1.30 16 3 C -0.15 -1.10 7.77 37.16 0.29 -0.81 16 4 C 0.09 1.10 2.22 -27.88 -0.06 1.04 16 5 H 0.12 1.06 5.43 -51.93 -0.28 0.78 16 6 O -0.28 -3.62 8.43 -38.73 -0.33 -3.94 16 7 C 0.18 1.81 5.54 -38.71 -0.21 1.60 16 8 C -0.21 -1.48 7.37 -39.48 -0.29 -1.78 16 9 C -0.05 -0.23 10.03 -39.53 -0.40 -0.62 16 10 C -0.16 -0.74 10.02 -39.63 -0.40 -1.14 16 11 C -0.03 -0.21 9.75 -39.19 -0.38 -0.59 16 12 C -0.06 -0.57 5.75 -106.70 -0.61 -1.19 16 13 C 0.26 3.35 14.88 -22.43 -0.33 3.02 16 14 N -0.41 -6.43 18.55 41.89 0.78 -5.65 16 15 C 0.45 7.49 7.27 36.01 0.26 7.76 16 16 O -0.49 -9.94 16.25 -25.48 -0.41 -10.35 16 17 O -0.35 -6.00 7.14 -39.26 -0.28 -6.28 16 18 C 0.08 1.62 5.40 37.16 0.20 1.82 16 19 C -0.01 -0.16 4.42 -27.88 -0.12 -0.28 16 20 C -0.53 -14.73 9.66 -34.44 -0.33 -15.07 16 21 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 22 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 24 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.17 5.32 -51.93 -0.28 0.89 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.47 6.63 -51.93 -0.34 0.13 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.35 6.50 -51.93 -0.34 0.01 16 35 H 0.15 0.81 4.42 -52.49 -0.23 0.58 16 36 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 38 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 40 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 41 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -34.26 361.86 -6.73 -40.99 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.63 Total: -3.22 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.42 Total: -6.89 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 1.55 Total: -31.90 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.02 Total: -20.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.26 -6.73 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052385982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.706 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds