Wall clock time and date at job start Tue Mar 31 2020 12:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47361 * 2 1 4 4 C 1.53006 * 109.47088 * 119.99881 * 2 1 3 5 5 H 1.09001 * 109.47179 * 300.00219 * 4 2 1 6 6 O 1.42902 * 109.47450 * 180.02562 * 4 2 1 7 7 C 1.35696 * 117.00075 * 99.43189 * 6 4 2 8 8 C 1.38651 * 120.15043 * 354.31793 * 7 6 4 9 9 C 1.38104 * 120.09265 * 179.97438 * 8 7 6 10 10 C 1.38520 * 120.39116 * 359.96130 * 9 8 7 11 11 C 1.37817 * 120.29575 * 0.02562 * 10 9 8 12 12 C 1.39710 * 119.90286 * 0.02562 * 11 10 9 13 13 C 1.43205 * 120.19415 * 179.97438 * 12 11 10 14 14 N 5.66765 * 160.75715 * 148.65843 * 2 1 3 15 15 C 1.50705 * 109.47151 * 59.99954 * 4 2 1 16 16 O 1.20829 * 119.99998 * 119.99929 * 15 4 2 17 17 O 1.34231 * 119.99718 * 300.00361 * 15 4 2 18 18 C 1.45202 * 116.99428 * 179.97438 * 17 15 4 19 19 C 1.53003 * 109.46605 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46748 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00577 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99693 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99727 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 120.00216 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47370 * 89.99941 * 24 22 20 26 26 H 1.48499 * 109.47173 * 209.99871 * 24 22 20 27 27 H 1.48502 * 109.47184 * 329.99638 * 24 22 20 28 28 H 1.09001 * 109.47289 * 299.99968 * 1 2 3 29 29 H 1.08998 * 109.46705 * 60.00083 * 1 2 3 30 30 H 1.08999 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47335 * 239.99540 * 2 1 3 32 32 H 1.09001 * 109.47168 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47143 * 299.99649 * 3 2 1 34 34 H 1.09001 * 109.46893 * 59.99789 * 3 2 1 35 35 H 1.07999 * 119.95111 * 359.97438 * 8 7 6 36 36 H 1.07998 * 119.80263 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.84757 * 179.74629 * 10 9 8 38 38 H 1.08007 * 120.04916 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47347 * 299.99681 * 18 17 15 40 40 H 1.09001 * 109.47097 * 60.00020 * 18 17 15 41 41 H 1.08999 * 109.47146 * 299.99974 * 19 18 17 42 42 H 1.09001 * 109.47238 * 60.00276 * 19 18 17 43 43 H 0.97003 * 120.00034 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 8 3.4690 -0.7208 1.2497 7 6 4.0846 0.2132 2.0179 8 6 3.3372 1.1859 2.6643 9 6 3.9649 2.1355 3.4463 10 6 5.3424 2.1242 3.5920 11 6 6.1008 1.1646 2.9570 12 6 5.4787 0.1987 2.1621 13 6 6.2608 -0.8010 1.4989 14 7 6.8810 -1.5953 0.9716 15 6 1.5376 -2.1421 1.2493 16 8 2.3228 -3.0605 1.2494 17 8 0.2179 -2.3873 1.2493 18 6 -0.1937 -3.7798 1.2487 19 6 -1.7216 -3.8598 1.2494 20 6 -2.1489 -5.3050 1.2495 21 1 -1.4052 -6.0881 1.2487 22 6 -3.4895 -5.6275 1.2495 23 7 -3.8623 -6.8887 1.2490 24 14 -4.7759 -4.2732 1.2487 25 1 -5.1167 -3.9149 -0.1516 26 1 -5.9960 -4.7490 1.9488 27 1 -4.2379 -3.0789 1.9483 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.2628 1.2009 2.5561 36 1 3.3783 2.8912 3.9473 37 1 5.8245 2.8735 4.2024 38 1 7.1746 1.1597 3.0730 39 1 0.1960 -4.2735 0.3585 40 1 0.1961 -4.2742 2.1385 41 1 -2.1110 -3.3661 2.1398 42 1 -2.1118 -3.3652 0.3598 43 1 -4.8055 -7.1156 1.2494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052385982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:44 Heat of formation + Delta-G solvation = -90.647535 kcal Electronic energy + Delta-G solvation = -26144.975314 eV Core-core repulsion = 22348.291728 eV Total energy + Delta-G solvation = -3796.683587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34028 -41.15123 -39.01442 -37.81237 -37.42466 -36.28578 -35.36876 -32.83268 -32.39539 -31.34809 -29.27780 -27.95564 -27.03889 -24.93363 -23.78471 -22.98295 -22.42675 -21.38261 -20.58967 -19.24641 -18.88514 -18.48091 -17.97619 -17.59845 -16.95289 -16.55894 -16.29050 -15.99779 -15.52481 -15.32744 -15.08066 -15.01170 -14.85069 -14.51074 -14.19863 -14.12885 -13.86148 -13.66494 -13.48509 -13.43849 -13.16979 -13.02663 -12.87934 -12.55855 -12.53335 -12.49307 -12.24020 -12.08302 -11.97241 -11.75690 -11.55706 -11.51562 -11.42593 -11.29802 -10.81498 -10.01925 -9.32819 -8.34627 -6.43944 -0.20027 0.34159 0.90386 1.06713 1.39457 1.41710 1.54244 1.59868 1.93877 2.19016 2.35073 2.84776 2.89643 3.00484 3.30292 3.42555 3.51042 3.87850 3.89372 4.10942 4.11567 4.13229 4.21770 4.31648 4.43793 4.46629 4.53369 4.57925 4.84106 4.86587 4.92526 4.98935 5.05742 5.15437 5.19292 5.28007 5.34626 5.36875 5.39061 5.50021 5.50413 5.57937 5.68849 6.08802 6.14458 6.45610 6.54446 6.62704 7.21239 8.81811 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002903 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.052648 B = 9644.286212 C =10248.127960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.102 4.102 3 C -0.143 4.143 4 C 0.102 3.898 5 H 0.153 0.847 6 O -0.311 6.311 7 C 0.155 3.845 8 C -0.214 4.214 9 C -0.031 4.031 10 C -0.146 4.146 11 C -0.028 4.028 12 C -0.089 4.089 13 C 0.276 3.724 14 N -0.479 5.479 15 C 0.450 3.550 16 O -0.536 6.536 17 O -0.333 6.333 18 C 0.089 3.911 19 C 0.002 3.998 20 C -0.546 4.546 21 H 0.029 0.971 22 C 0.009 3.991 23 N -0.947 5.947 24 Si 0.958 3.042 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.235 1.235 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.119 31.563 5.481 34.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.121 4.121 3 C -0.200 4.200 4 C 0.045 3.955 5 H 0.170 0.830 6 O -0.224 6.224 7 C 0.107 3.893 8 C -0.232 4.232 9 C -0.049 4.049 10 C -0.164 4.164 11 C -0.048 4.048 12 C -0.094 4.094 13 C -0.037 4.037 14 N -0.156 5.156 15 C 0.293 3.707 16 O -0.425 6.425 17 O -0.249 6.249 18 C 0.016 3.984 19 C -0.035 4.035 20 C -0.584 4.584 21 H 0.047 0.953 22 C -0.189 4.189 23 N -0.587 5.587 24 Si 0.779 3.221 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.158 1.158 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.179 0.821 36 H 0.191 0.809 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.226 29.742 4.530 33.279 hybrid contribution -0.641 -1.087 -0.196 1.277 sum 13.585 28.655 4.333 32.007 Atomic orbital electron populations 1.22074 0.91816 1.03614 1.04244 1.21524 0.98073 0.98098 0.94370 1.21978 1.00936 0.92401 1.04678 1.22317 0.79248 0.88693 1.05237 0.82993 1.86134 1.20036 1.53281 1.62987 1.19282 0.90745 0.88794 0.90442 1.21598 1.01666 0.97132 1.02809 1.21695 0.95111 0.95688 0.92420 1.21483 0.93941 0.99645 1.01300 1.21351 1.01596 0.90621 0.91249 1.15655 0.88251 0.98317 1.07156 1.26100 0.92521 0.92671 0.92435 1.81278 1.11588 1.11342 1.11344 1.24130 0.81397 0.92882 0.72259 1.90700 1.57806 1.48175 1.45821 1.86562 1.23791 1.31757 1.82806 1.23036 0.97276 0.77217 1.00906 1.19441 0.89477 0.95674 0.98945 1.21134 0.92962 0.91657 1.52648 0.95272 1.26032 1.01119 0.98442 0.93280 1.70061 1.17621 1.19657 1.51336 0.85552 0.77322 0.79570 0.79616 1.18760 1.20852 1.15836 0.89836 0.90196 0.92335 0.91693 0.92947 0.90335 0.89245 0.82143 0.80914 0.81127 0.82550 0.92993 0.92689 0.93943 0.94250 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.67 71.98 0.62 -2.17 16 2 C -0.10 -1.86 2.71 -10.79 -0.03 -1.88 16 3 C -0.14 -1.60 7.77 71.98 0.56 -1.04 16 4 C 0.10 2.30 2.22 29.85 0.07 2.37 16 5 H 0.15 2.26 5.43 -2.39 -0.01 2.25 16 6 O -0.31 -8.14 8.43 -71.09 -0.60 -8.73 16 7 C 0.16 2.89 5.54 22.84 0.13 3.02 16 8 C -0.21 -2.09 7.37 22.34 0.16 -1.92 16 9 C -0.03 -0.12 10.03 22.31 0.22 0.10 16 10 C -0.15 -0.60 10.02 22.24 0.22 -0.38 16 11 C -0.03 -0.28 9.75 22.53 0.22 -0.06 16 12 C -0.09 -1.69 5.75 -21.21 -0.12 -1.81 16 13 C 0.28 7.60 14.88 88.32 1.31 8.91 16 14 N -0.48 -16.17 18.55 19.02 0.35 -15.81 16 15 C 0.45 15.13 7.27 71.24 0.52 15.65 16 16 O -0.54 -23.13 16.25 28.38 0.46 -22.67 16 17 O -0.33 -11.45 7.14 -51.42 -0.37 -11.82 16 18 C 0.09 3.77 5.40 71.98 0.39 4.16 16 19 C 0.00 0.09 4.42 29.85 0.13 0.22 16 20 C -0.55 -31.43 9.66 25.60 0.25 -31.18 16 21 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 22 C 0.01 0.52 5.47 84.65 0.46 0.98 16 23 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 24 Si 0.96 42.06 27.47 68.60 1.88 43.94 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 27 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.42 5.32 -2.39 -0.01 1.41 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 0.70 6.63 -2.39 -0.02 0.68 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 0.52 6.50 -2.39 -0.02 0.51 16 35 H 0.16 0.95 4.42 -2.91 -0.01 0.94 16 36 H 0.17 -0.51 8.06 -2.91 -0.02 -0.53 16 37 H 0.17 -0.40 8.06 -2.91 -0.02 -0.42 16 38 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.05 2.33 8.13 -2.39 -0.02 2.31 16 40 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 41 H 0.04 1.84 7.20 -2.39 -0.02 1.82 16 42 H 0.04 1.70 7.57 -2.39 -0.02 1.68 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.35 361.86 8.13 -74.22 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 0.98 Total: 4.52 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.12 Total: -5.04 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: 0.65 Total: -74.43 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.51 Total: -43.22 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.94 kcal Total: -82.35 8.13 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052385982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.426 kcal (2) G-P(sol) polarization free energy of solvation -82.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds