Wall clock time and date at job start Tue Mar 31 2020 12:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.52997 * 109.47057 * 120.00062 * 2 1 3 5 5 H 1.09000 * 109.47317 * 184.99806 * 4 2 1 6 6 O 1.42898 * 109.47274 * 304.99840 * 4 2 1 7 7 C 1.35703 * 117.00138 * 265.82850 * 6 4 2 8 8 C 1.38641 * 120.14597 * 357.75977 * 7 6 4 9 9 C 1.38109 * 120.08833 * 179.97438 * 8 7 6 10 10 C 1.38517 * 120.39568 * 0.02562 * 9 8 7 11 11 C 1.37819 * 120.29468 * 359.97438 * 10 9 8 12 12 C 1.39720 * 119.90181 * 0.28157 * 11 10 9 13 13 C 1.43199 * 120.19247 * 179.69588 * 12 11 10 14 14 N 5.57569 * 67.10795 * 79.84984 * 2 1 3 15 15 C 1.50699 * 109.47054 * 64.99699 * 4 2 1 16 16 O 1.20830 * 120.00268 * 245.00094 * 15 4 2 17 17 O 1.34233 * 120.00168 * 65.00357 * 15 4 2 18 18 C 1.45192 * 117.00208 * 180.02562 * 17 15 4 19 19 C 1.53005 * 109.47325 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.47410 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00029 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99980 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47178 * 59.99792 * 24 22 20 26 26 H 1.48502 * 109.47094 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47262 * 299.99883 * 24 22 20 28 28 H 1.09001 * 109.47078 * 299.99954 * 1 2 3 29 29 H 1.09004 * 109.47071 * 59.99478 * 1 2 3 30 30 H 1.08999 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46647 * 239.99728 * 2 1 3 32 32 H 1.09006 * 109.47051 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47324 * 299.99586 * 3 2 1 34 34 H 1.09001 * 109.47121 * 60.00072 * 3 2 1 35 35 H 1.08001 * 119.95877 * 0.02562 * 8 7 6 36 36 H 1.08011 * 119.80128 * 180.02562 * 9 8 7 37 37 H 1.08001 * 119.85198 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.05383 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.47386 * 299.99874 * 18 17 15 40 40 H 1.08999 * 109.47876 * 59.99597 * 18 17 15 41 41 H 1.09002 * 109.46813 * 299.99706 * 19 18 17 42 42 H 1.08991 * 109.47067 * 59.99383 * 19 18 17 43 43 H 0.97005 * 120.00031 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2952 6 8 1.4703 -0.1188 2.4130 7 6 2.1995 0.8474 3.0263 8 6 3.4582 1.1785 2.5487 9 6 4.1990 2.1625 3.1735 10 6 3.6929 2.8248 4.2797 11 6 2.4436 2.5085 4.7680 12 6 1.6856 1.5114 4.1488 13 6 0.3895 1.1733 4.6549 14 7 -0.6389 0.9052 5.0562 15 6 1.6413 -2.1733 1.1889 16 8 0.8688 -2.6220 2.0024 17 8 2.1443 -2.9682 0.2313 18 6 1.7157 -4.3554 0.2337 19 6 2.3883 -5.0991 -0.9219 20 6 1.9430 -6.5388 -0.9198 21 1 1.2499 -6.8886 -0.1691 22 6 2.4205 -7.4095 -1.8764 23 7 3.2648 -6.9837 -2.7903 24 14 1.8690 -9.1942 -1.8733 25 1 0.3942 -9.2569 -2.0352 26 1 2.5218 -9.9160 -2.9950 27 1 2.2531 -9.8289 -0.5868 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.8596 0.6669 1.6864 36 1 5.1790 2.4170 2.7972 37 1 4.2797 3.5932 4.7613 38 1 2.0530 3.0271 5.6310 39 1 1.9968 -4.8210 1.1784 40 1 0.6333 -4.4017 0.1140 41 1 2.1067 -4.6335 -1.8664 42 1 3.4707 -5.0530 -0.8026 43 1 3.6004 -7.5962 -3.4635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052385983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:49 Heat of formation + Delta-G solvation = -76.647631 kcal Electronic energy + Delta-G solvation = -26064.839166 eV Core-core repulsion = 22268.762661 eV Total energy + Delta-G solvation = -3796.076505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37052 -39.92653 -38.22260 -36.47646 -36.12972 -35.25582 -33.39646 -31.79967 -30.78986 -30.40119 -28.23409 -27.39061 -25.04839 -24.25895 -23.10036 -21.80109 -20.92850 -20.20790 -19.77074 -17.87202 -17.55564 -16.73124 -16.69481 -16.11994 -15.93313 -15.54797 -15.35609 -14.90028 -14.56590 -14.32227 -14.16643 -13.53871 -13.39632 -13.32240 -13.18022 -12.98556 -12.88582 -12.49614 -12.42339 -12.36179 -12.11229 -12.00971 -11.71764 -11.39416 -11.32847 -11.13120 -11.01514 -10.85417 -10.78673 -10.72667 -10.20393 -9.74158 -9.68401 -9.44864 -9.36812 -8.65367 -8.48620 -6.14985 -4.19592 0.41929 0.89767 2.13611 2.33782 2.58952 2.72175 3.27776 3.29142 3.31932 3.37143 3.54951 3.67202 4.19844 4.32895 4.34695 4.40536 4.47394 4.66599 4.76569 4.85865 4.92789 5.01996 5.09979 5.21838 5.30574 5.31879 5.48980 5.56965 5.69288 5.70593 5.78451 5.83741 5.96560 5.97391 6.00383 6.02590 6.15221 6.20994 6.54594 6.79546 6.82516 7.41744 7.48545 7.54893 7.80592 8.04360 8.18280 8.85493 9.45161 10.96406 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002661 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.014824 B =10521.681868 C =10815.668198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.152 4.152 4 C 0.092 3.908 5 H 0.118 0.882 6 O -0.275 6.275 7 C 0.182 3.818 8 C -0.214 4.214 9 C -0.046 4.046 10 C -0.160 4.160 11 C -0.033 4.033 12 C -0.062 4.062 13 C 0.259 3.741 14 N -0.413 5.413 15 C 0.457 3.543 16 O -0.491 6.491 17 O -0.351 6.351 18 C 0.076 3.924 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 24.116 8.992 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.209 4.209 4 C 0.035 3.965 5 H 0.135 0.865 6 O -0.186 6.186 7 C 0.133 3.867 8 C -0.233 4.233 9 C -0.065 4.065 10 C -0.179 4.179 11 C -0.053 4.053 12 C -0.066 4.066 13 C -0.056 4.056 14 N -0.088 5.088 15 C 0.297 3.703 16 O -0.378 6.378 17 O -0.267 6.267 18 C 0.004 3.996 19 C -0.011 4.011 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.528 5.528 24 Si 0.727 3.273 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.317 23.351 9.721 25.399 hybrid contribution 0.237 -1.122 -0.269 1.177 sum 2.554 22.229 9.452 24.290 Atomic orbital electron populations 1.21798 0.93570 1.02727 1.02459 1.21641 0.98101 0.97134 0.95956 1.22045 1.01161 0.94800 1.02910 1.22019 1.00343 0.88526 0.85635 0.86518 1.86186 1.43499 1.48534 1.40407 1.18993 0.90021 0.87397 0.90294 1.21377 0.94403 1.03045 1.04441 1.21197 0.99051 0.92729 0.93493 1.21008 0.96030 1.02522 0.98305 1.21037 0.93313 0.93127 0.97834 1.15288 0.90402 1.02797 0.98096 1.25301 0.92617 0.93879 0.93831 1.81225 1.11314 1.07664 1.08631 1.22797 0.79273 0.88302 0.79903 1.90698 1.32169 1.75748 1.39169 1.86487 1.65693 1.25183 1.49366 1.23756 0.99800 0.73588 1.02495 1.19171 0.96693 0.93665 0.91526 1.20929 1.28034 0.93534 1.14165 0.92281 1.24967 0.94796 0.99129 0.95135 1.69953 1.31034 1.35797 1.16031 0.86526 0.78987 0.84040 0.77733 1.20029 1.21074 1.20033 0.91876 0.91735 0.92384 0.87550 0.91858 0.91399 0.92144 0.83713 0.84707 0.84708 0.84301 0.92098 0.92083 0.95252 0.95279 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.81 37.16 0.33 -1.43 16 2 C -0.11 -1.15 2.74 -90.62 -0.25 -1.40 16 3 C -0.15 -1.15 7.73 37.16 0.29 -0.87 16 4 C 0.09 1.14 2.37 -27.89 -0.07 1.08 16 5 H 0.12 1.11 5.38 -51.93 -0.28 0.84 16 6 O -0.27 -3.63 7.76 -38.72 -0.30 -3.93 16 7 C 0.18 1.86 5.34 -38.71 -0.21 1.65 16 8 C -0.21 -1.55 7.15 -39.48 -0.28 -1.83 16 9 C -0.05 -0.24 10.03 -39.53 -0.40 -0.63 16 10 C -0.16 -0.78 10.02 -39.63 -0.40 -1.17 16 11 C -0.03 -0.21 9.76 -39.18 -0.38 -0.59 16 12 C -0.06 -0.61 5.75 -106.69 -0.61 -1.22 16 13 C 0.26 3.36 14.87 -22.48 -0.33 3.03 16 14 N -0.41 -6.41 18.54 41.83 0.78 -5.63 16 15 C 0.46 7.90 6.27 36.00 0.23 8.12 16 16 O -0.49 -10.18 16.26 -25.47 -0.41 -10.59 16 17 O -0.35 -6.64 10.19 -39.26 -0.40 -7.04 16 18 C 0.08 1.65 5.40 37.16 0.20 1.85 16 19 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 20 C -0.53 -14.66 9.11 -34.44 -0.31 -14.98 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 24 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 28 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.82 7.38 -51.93 -0.38 0.44 16 31 H 0.11 1.12 8.12 -51.93 -0.42 0.70 16 32 H 0.06 0.37 6.80 -51.93 -0.35 0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.48 6.27 -51.93 -0.33 0.16 16 35 H 0.15 0.87 4.53 -52.49 -0.24 0.63 16 36 H 0.14 0.36 8.06 -52.48 -0.42 -0.07 16 37 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 40 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -33.72 368.15 -7.26 -40.98 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -5.74 Total: -4.14 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.45 Total: -6.23 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 1.51 Total: -30.80 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.11 Total: -21.56 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.72 -7.26 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052385983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.670 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds