Wall clock time and date at job start Tue Mar 31 2020 12:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.52997 * 109.47057 * 120.00062 * 2 1 3 5 5 H 1.09000 * 109.47317 * 184.99806 * 4 2 1 6 6 O 1.42898 * 109.47274 * 304.99840 * 4 2 1 7 7 C 1.35703 * 117.00138 * 265.82850 * 6 4 2 8 8 C 1.38641 * 120.14597 * 357.75977 * 7 6 4 9 9 C 1.38109 * 120.08833 * 179.97438 * 8 7 6 10 10 C 1.38517 * 120.39568 * 0.02562 * 9 8 7 11 11 C 1.37819 * 120.29468 * 359.97438 * 10 9 8 12 12 C 1.39720 * 119.90181 * 0.28157 * 11 10 9 13 13 C 1.43199 * 120.19247 * 179.69588 * 12 11 10 14 14 N 5.57569 * 67.10795 * 79.84984 * 2 1 3 15 15 C 1.50699 * 109.47054 * 64.99699 * 4 2 1 16 16 O 1.20830 * 120.00268 * 245.00094 * 15 4 2 17 17 O 1.34233 * 120.00168 * 65.00357 * 15 4 2 18 18 C 1.45192 * 117.00208 * 180.02562 * 17 15 4 19 19 C 1.53005 * 109.47325 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.47410 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00029 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99980 * 179.97438 * 20 19 18 23 23 N 1.31507 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47178 * 59.99792 * 24 22 20 26 26 H 1.48502 * 109.47094 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47262 * 299.99883 * 24 22 20 28 28 H 1.09001 * 109.47078 * 299.99954 * 1 2 3 29 29 H 1.09004 * 109.47071 * 59.99478 * 1 2 3 30 30 H 1.08999 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46647 * 239.99728 * 2 1 3 32 32 H 1.09006 * 109.47051 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47324 * 299.99586 * 3 2 1 34 34 H 1.09001 * 109.47121 * 60.00072 * 3 2 1 35 35 H 1.08001 * 119.95877 * 0.02562 * 8 7 6 36 36 H 1.08011 * 119.80128 * 180.02562 * 9 8 7 37 37 H 1.08001 * 119.85198 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.05383 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.47386 * 299.99874 * 18 17 15 40 40 H 1.08999 * 109.47876 * 59.99597 * 18 17 15 41 41 H 1.09002 * 109.46813 * 299.99706 * 19 18 17 42 42 H 1.08991 * 109.47067 * 59.99383 * 19 18 17 43 43 H 0.97005 * 120.00031 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2952 6 8 1.4703 -0.1188 2.4130 7 6 2.1995 0.8474 3.0263 8 6 3.4582 1.1785 2.5487 9 6 4.1990 2.1625 3.1735 10 6 3.6929 2.8248 4.2797 11 6 2.4436 2.5085 4.7680 12 6 1.6856 1.5114 4.1488 13 6 0.3895 1.1733 4.6549 14 7 -0.6389 0.9052 5.0562 15 6 1.6413 -2.1733 1.1889 16 8 0.8688 -2.6220 2.0024 17 8 2.1443 -2.9682 0.2313 18 6 1.7157 -4.3554 0.2337 19 6 2.3883 -5.0991 -0.9219 20 6 1.9430 -6.5388 -0.9198 21 1 1.2499 -6.8886 -0.1691 22 6 2.4205 -7.4095 -1.8764 23 7 3.2648 -6.9837 -2.7903 24 14 1.8690 -9.1942 -1.8733 25 1 0.3942 -9.2569 -2.0352 26 1 2.5218 -9.9160 -2.9950 27 1 2.2531 -9.8289 -0.5868 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.8596 0.6669 1.6864 36 1 5.1790 2.4170 2.7972 37 1 4.2797 3.5932 4.7613 38 1 2.0530 3.0271 5.6310 39 1 1.9968 -4.8210 1.1784 40 1 0.6333 -4.4017 0.1140 41 1 2.1067 -4.6335 -1.8664 42 1 3.4707 -5.0530 -0.8026 43 1 3.6004 -7.5962 -3.4635 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052385983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:48 Heat of formation + Delta-G solvation = -95.008161 kcal Electronic energy + Delta-G solvation = -26065.635338 eV Core-core repulsion = 22268.762661 eV Total energy + Delta-G solvation = -3796.872678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.33870 -41.13386 -39.05287 -37.71737 -37.43009 -36.11823 -35.45403 -32.44851 -32.39400 -31.32342 -29.32292 -28.17545 -26.95954 -24.87989 -23.93803 -23.20015 -22.56122 -21.17490 -20.52681 -19.01754 -18.72793 -18.24325 -17.85621 -17.66300 -17.08187 -16.67709 -16.41085 -15.89722 -15.59866 -15.35230 -15.11929 -14.80119 -14.63254 -14.39505 -14.22068 -14.11695 -14.06515 -13.82053 -13.43959 -13.20998 -13.13511 -13.04519 -12.84014 -12.63606 -12.62693 -12.56295 -12.35539 -12.27297 -11.87915 -11.80622 -11.60592 -11.54063 -11.52989 -11.27505 -10.62468 -10.00020 -9.28955 -8.28979 -6.41860 -0.17890 0.37095 0.94007 1.03356 1.40576 1.42760 1.51250 1.62492 1.96076 2.22454 2.39736 2.86485 2.91374 3.05563 3.32465 3.39834 3.53142 3.87189 3.91122 4.04137 4.14573 4.15581 4.18807 4.32422 4.45324 4.46078 4.52574 4.63171 4.72393 4.78527 4.86219 4.95022 5.07184 5.15650 5.18626 5.24174 5.36492 5.37483 5.44003 5.44412 5.51659 5.68763 5.71669 6.04087 6.10436 6.47405 6.56010 6.70768 7.27702 8.83170 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.002661 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.014824 B =10521.681868 C =10815.668198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.144 4.144 4 C 0.101 3.899 5 H 0.151 0.849 6 O -0.306 6.306 7 C 0.158 3.842 8 C -0.215 4.215 9 C -0.031 4.031 10 C -0.147 4.147 11 C -0.027 4.027 12 C -0.089 4.089 13 C 0.278 3.722 14 N -0.478 5.478 15 C 0.454 3.546 16 O -0.532 6.532 17 O -0.350 6.350 18 C 0.090 3.910 19 C 0.035 3.965 20 C -0.554 4.554 21 H 0.061 0.939 22 C 0.011 3.989 23 N -0.923 5.923 24 Si 0.969 3.031 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.267 1.267 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.011 0.989 42 H 0.012 0.988 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 26.117 9.045 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.201 4.201 4 C 0.044 3.956 5 H 0.168 0.832 6 O -0.218 6.218 7 C 0.110 3.890 8 C -0.234 4.234 9 C -0.049 4.049 10 C -0.164 4.164 11 C -0.047 4.047 12 C -0.094 4.094 13 C -0.036 4.036 14 N -0.155 5.155 15 C 0.297 3.703 16 O -0.421 6.421 17 O -0.266 6.266 18 C 0.017 3.983 19 C -0.002 4.002 20 C -0.592 4.592 21 H 0.079 0.921 22 C -0.189 4.189 23 N -0.562 5.562 24 Si 0.793 3.207 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.192 1.192 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.176 0.824 36 H 0.189 0.811 37 H 0.188 0.812 38 H 0.175 0.825 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.031 0.969 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.807 25.384 9.783 27.625 hybrid contribution -0.435 -1.594 -0.236 1.669 sum 4.371 23.790 9.546 26.004 Atomic orbital electron populations 1.21788 0.95147 1.00613 1.02880 1.21697 0.96774 0.99197 0.94845 1.22021 1.02704 0.92059 1.03329 1.22131 1.02053 0.84743 0.86663 0.83186 1.86142 1.44928 1.49876 1.40888 1.19263 0.91324 0.87596 0.90842 1.21567 0.93147 1.03684 1.04954 1.21671 0.99875 0.90829 0.92560 1.21463 0.95061 1.02286 0.97632 1.21341 0.93650 0.91809 0.97943 1.15609 0.89616 1.04935 0.99209 1.26001 0.92986 0.92253 0.92372 1.81213 1.13311 1.09964 1.10977 1.23944 0.78028 0.90043 0.78280 1.90675 1.34019 1.76798 1.40574 1.86468 1.65816 1.23935 1.50384 1.23248 0.98942 0.75265 1.00819 1.18957 0.95754 0.93537 0.91963 1.21324 1.28426 0.94868 1.14591 0.92098 1.25882 0.94647 1.03792 0.94540 1.70060 1.31927 1.37540 1.16640 0.85438 0.78766 0.78337 0.78158 1.19317 1.20197 1.19197 0.92940 0.89773 0.95714 0.87452 0.89313 0.90256 0.92433 0.82437 0.81126 0.81189 0.82512 0.92282 0.92584 0.97064 0.96913 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.81 71.98 0.63 -2.95 16 2 C -0.11 -2.14 2.74 -10.79 -0.03 -2.17 16 3 C -0.14 -1.78 7.73 71.98 0.56 -1.22 16 4 C 0.10 2.45 2.37 29.85 0.07 2.52 16 5 H 0.15 2.54 5.38 -2.39 -0.01 2.52 16 6 O -0.31 -8.15 7.76 -71.20 -0.55 -8.70 16 7 C 0.16 3.01 5.34 22.84 0.12 3.14 16 8 C -0.22 -2.35 7.15 22.34 0.16 -2.19 16 9 C -0.03 -0.16 10.03 22.31 0.22 0.07 16 10 C -0.15 -0.69 10.02 22.24 0.22 -0.47 16 11 C -0.03 -0.27 9.76 22.53 0.22 -0.05 16 12 C -0.09 -1.69 5.75 -21.21 -0.12 -1.81 16 13 C 0.28 7.53 14.87 88.33 1.31 8.84 16 14 N -0.48 -15.87 18.54 19.00 0.35 -15.52 16 15 C 0.45 16.18 6.27 71.24 0.45 16.62 16 16 O -0.53 -23.19 16.26 28.37 0.46 -22.73 16 17 O -0.35 -13.59 10.19 -51.44 -0.52 -14.12 16 18 C 0.09 4.08 5.40 71.98 0.39 4.47 16 19 C 0.04 1.85 5.35 29.85 0.16 2.01 16 20 C -0.55 -31.34 9.11 25.60 0.23 -31.10 16 21 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 22 C 0.01 0.61 5.46 84.66 0.46 1.08 16 23 N -0.92 -54.26 13.29 21.45 0.28 -53.97 16 24 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H 0.05 1.37 7.56 -2.39 -0.02 1.35 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.02 0.74 7.38 -2.39 -0.02 0.72 16 31 H 0.11 2.15 8.12 -2.39 -0.02 2.13 16 32 H 0.09 0.65 6.80 -2.38 -0.02 0.64 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.78 6.27 -2.39 -0.01 0.76 16 35 H 0.16 1.23 4.53 -2.91 -0.01 1.22 16 36 H 0.17 -0.27 8.06 -2.90 -0.02 -0.29 16 37 H 0.17 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 40 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -78.14 368.15 8.14 -70.00 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.03 Total: 2.76 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 5.06 Total: -3.22 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: 0.64 Total: -69.49 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.62 Total: -45.55 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -78.14 8.14 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052385983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.004 kcal (2) G-P(sol) polarization free energy of solvation -78.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds