Wall clock time and date at job start Tue Mar 31 2020 13:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.08998 * 109.47511 * 54.35542 * 3 2 1 5 5 C 1.50700 * 109.47219 * 174.35576 * 3 2 1 6 6 H 1.07997 * 119.99990 * 116.29906 * 5 3 2 7 7 C 1.37884 * 120.00031 * 296.30129 * 5 3 2 8 8 N 1.31508 * 119.99781 * 353.41762 * 7 5 3 9 9 Si 1.86804 * 119.99913 * 173.14094 * 7 5 3 10 10 H 1.48499 * 109.46786 * 180.27220 * 9 7 5 11 11 H 1.48493 * 109.47366 * 300.27474 * 9 7 5 12 12 H 1.48497 * 109.46922 * 60.27471 * 9 7 5 13 13 N 1.46904 * 109.47081 * 294.35597 * 3 2 1 14 14 C 1.46896 * 110.99885 * 154.23984 * 13 3 2 15 15 H 1.08999 * 109.47456 * 36.73792 * 14 13 3 16 16 C 1.53006 * 109.46774 * 276.74120 * 14 13 3 17 17 C 1.50701 * 109.47483 * 156.74388 * 14 13 3 18 18 C 1.38264 * 119.94029 * 39.71788 * 17 14 13 19 19 C 1.38151 * 120.05539 * 179.72683 * 18 17 14 20 20 C 1.38734 * 119.93577 * 0.55454 * 19 18 17 21 21 O 1.35901 * 120.05075 * 179.74686 * 20 19 18 22 22 C 1.42907 * 117.00024 * 359.97377 * 21 20 19 23 23 F 1.39900 * 109.46901 * 60.00231 * 22 21 20 24 24 F 1.39901 * 109.46860 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.46930 * 300.00208 * 22 21 20 26 26 C 1.38728 * 119.89532 * 359.72348 * 20 19 18 27 27 C 1.38150 * 119.94310 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.46936 * 305.09267 * 1 2 3 29 29 H 1.09003 * 109.46474 * 65.08806 * 1 2 3 30 30 H 1.08996 * 109.47157 * 185.08778 * 1 2 3 31 31 H 1.08993 * 109.47186 * 239.99989 * 2 1 3 32 32 H 1.09000 * 109.47047 * 119.99719 * 2 1 3 33 33 H 0.96997 * 120.00147 * 354.92090 * 8 7 5 34 34 H 1.00905 * 110.99468 * 278.18729 * 13 3 2 35 35 H 1.09002 * 109.47177 * 305.20320 * 16 14 13 36 36 H 1.08994 * 109.47492 * 65.20487 * 16 14 13 37 37 H 1.09001 * 109.47403 * 185.20971 * 16 14 13 38 38 H 1.08004 * 119.97535 * 0.02562 * 18 17 14 39 39 H 1.07995 * 120.03085 * 180.27545 * 19 18 17 40 40 H 1.07996 * 120.02966 * 179.97438 * 26 20 19 41 41 H 1.07996 * 119.97398 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9848 0.8351 5 6 3.5405 1.4448 0.1397 6 1 4.1565 1.8323 -0.6582 7 6 4.1269 0.9522 1.2863 8 7 3.3783 0.6007 2.3088 9 14 5.9841 0.7767 1.3843 10 1 6.3596 0.2224 2.7098 11 1 6.4519 -0.1399 0.3138 12 1 6.6171 2.1083 1.2073 13 7 1.6647 2.0946 -1.2618 14 6 1.5666 3.5505 -1.0930 15 1 2.3406 3.8896 -0.4045 16 6 0.1899 3.9067 -0.5282 17 6 1.7514 4.2246 -2.4281 18 6 1.1866 3.6736 -3.5635 19 6 1.3498 4.2926 -4.7877 20 6 2.0909 5.4619 -4.8790 21 8 2.2573 6.0700 -6.0829 22 6 1.6416 5.4498 -7.2136 23 9 0.2585 5.3839 -7.0137 24 9 1.9120 6.2012 -8.3623 25 9 2.1520 4.1569 -7.3717 26 6 2.6614 6.0096 -3.7392 27 6 2.4900 5.3901 -2.5164 28 1 -0.3633 0.5908 0.8409 29 1 -0.3632 0.4329 -0.9321 30 1 -0.3633 -1.0236 0.0911 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.4212 0.7563 2.2854 34 1 2.3137 1.8588 -1.9976 35 1 -0.5855 3.4874 -1.1693 36 1 0.0920 3.4959 0.4766 37 1 0.0824 4.9907 -0.4896 38 1 0.6132 2.7611 -3.4925 39 1 0.9048 3.8643 -5.6736 40 1 3.2391 6.9195 -3.8078 41 1 2.9336 5.8163 -1.6287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:15 Heat of formation + Delta-G solvation = -184.180435 kcal Electronic energy + Delta-G solvation = -26944.972804 eV Core-core repulsion = 22602.376586 eV Total energy + Delta-G solvation = -4342.596218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.64806 -48.38529 -48.22999 -40.36842 -38.39374 -36.44089 -33.70591 -31.51307 -31.13106 -29.84157 -28.51462 -26.18404 -25.48958 -23.44786 -23.08377 -22.61999 -20.41398 -19.76446 -19.67298 -19.35314 -19.14342 -17.20457 -16.78403 -15.97591 -15.46378 -15.40337 -15.06522 -14.74327 -14.69891 -14.62017 -14.34647 -14.30242 -14.17494 -13.79319 -13.71145 -13.40781 -13.31086 -13.06467 -12.79893 -12.55895 -12.10374 -11.96857 -11.61184 -11.27176 -11.17627 -10.94875 -10.79135 -10.63166 -10.33991 -10.15360 -9.84579 -9.72422 -9.07583 -8.93276 -8.39327 -8.36422 -7.37511 -6.36810 -4.15463 1.18271 1.29319 1.31331 2.65178 3.38746 3.40920 3.57251 3.57915 3.58964 3.83913 4.48095 4.61724 4.68826 4.89155 5.01959 5.19836 5.30645 5.38715 5.48473 5.81701 5.88264 5.93406 6.07886 6.12230 6.17927 6.23101 6.26726 6.36425 6.42568 6.45927 6.59821 6.75772 6.83771 6.90699 6.92831 7.14697 7.30838 7.53500 7.90292 8.01210 8.38789 8.54623 8.77825 9.57234 10.95358 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.003209 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.447935 B = 8724.566610 C = 9281.436247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.026 0.974 5 C -0.627 4.627 6 H 0.047 0.953 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 1.059 2.941 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.676 5.676 14 C 0.125 3.875 15 H 0.058 0.942 16 C -0.130 4.130 17 C -0.085 4.085 18 C -0.060 4.060 19 C -0.191 4.191 20 C 0.088 3.912 21 O -0.313 6.313 22 C 0.603 3.397 23 F -0.166 7.166 24 F -0.136 7.136 25 F -0.165 7.165 26 C -0.124 4.124 27 C -0.080 4.080 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.273 0.727 34 H 0.332 0.668 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 10.282 -15.335 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.095 3.905 4 H 0.044 0.956 5 C -0.666 4.666 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.542 5.542 9 Si 0.888 3.112 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.216 1.216 13 N -0.306 5.306 14 C 0.015 3.985 15 H 0.076 0.924 16 C -0.188 4.188 17 C -0.085 4.085 18 C -0.079 4.079 19 C -0.210 4.210 20 C 0.046 3.954 21 O -0.233 6.233 22 C 0.513 3.487 23 F -0.148 7.148 24 F -0.117 7.117 25 F -0.147 7.147 26 C -0.143 4.143 27 C -0.098 4.098 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.568 9.770 -14.325 17.931 hybrid contribution -0.303 0.626 -1.299 1.473 sum -4.871 10.396 -15.624 19.389 Atomic orbital electron populations 1.21699 0.98268 0.98726 1.00810 1.21550 0.92848 0.99448 1.01006 1.19279 0.93803 0.90622 0.86782 0.95584 1.22617 0.92353 1.46662 1.04982 0.93468 1.25663 1.06487 0.93315 0.92265 1.70786 1.08123 1.43887 1.31375 0.83689 0.74931 0.76447 0.76166 1.20764 1.21468 1.21632 1.60992 1.54659 1.04949 1.10046 1.20322 0.97396 0.89820 0.90980 0.92395 1.21762 0.96408 0.99481 1.01173 1.20310 0.96721 0.95181 0.96314 1.20943 0.97359 0.99271 0.90289 1.21501 1.02999 0.96118 1.00354 1.18680 1.00438 0.94088 0.82174 1.86382 1.71251 1.51027 1.14663 1.19356 0.75270 0.74834 0.79288 1.93298 1.30982 1.95825 1.94717 1.93291 1.93896 1.76980 1.47553 1.93310 1.86994 1.38882 1.95504 1.20327 1.02637 1.01818 0.89470 1.20989 0.97308 0.94888 0.96630 0.94342 0.92923 0.95284 0.93980 0.91667 0.91588 0.85138 0.92456 0.92419 0.93460 0.84050 0.85287 0.84779 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.75 37.16 0.36 -2.25 16 2 C -0.11 -2.46 5.29 -26.73 -0.14 -2.60 16 3 C 0.20 4.69 1.41 -68.86 -0.10 4.60 16 4 H 0.03 0.66 6.45 -51.93 -0.34 0.33 16 5 C -0.63 -16.42 8.26 -34.44 -0.28 -16.70 16 6 H 0.05 1.25 7.71 -52.49 -0.40 0.85 16 7 C 0.03 0.77 5.20 -17.82 -0.09 0.68 16 8 N -0.91 -25.96 12.76 55.43 0.71 -25.25 16 9 Si 1.06 24.39 29.91 -169.99 -5.08 19.30 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -12.99 4.98 -102.17 -0.51 -13.50 16 14 C 0.13 2.14 2.63 -68.86 -0.18 1.96 16 15 H 0.06 1.14 7.54 -51.93 -0.39 0.74 16 16 C -0.13 -2.03 9.33 37.16 0.35 -1.68 16 17 C -0.08 -1.26 4.72 -104.60 -0.49 -1.75 16 18 C -0.06 -0.84 9.03 -39.60 -0.36 -1.20 16 19 C -0.19 -2.49 8.26 -39.43 -0.33 -2.82 16 20 C 0.09 1.14 6.48 -39.22 -0.25 0.88 16 21 O -0.31 -3.79 10.37 -19.43 -0.20 -3.99 16 22 C 0.60 6.47 3.42 101.05 0.35 6.82 16 23 F -0.17 -1.77 15.56 2.25 0.04 -1.74 16 24 F -0.14 -1.35 17.53 2.25 0.04 -1.31 16 25 F -0.16 -1.83 15.56 2.25 0.04 -1.80 16 26 C -0.12 -1.53 9.99 -39.43 -0.39 -1.93 16 27 C -0.08 -1.06 9.66 -39.60 -0.38 -1.45 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.63 6.14 -51.93 -0.32 1.31 16 33 H 0.27 7.76 6.16 -40.82 -0.25 7.50 16 34 H 0.33 6.55 7.70 -39.29 -0.30 6.24 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.97 7.39 -51.93 -0.38 0.59 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.14 1.95 7.70 -52.48 -0.40 1.54 16 39 H 0.13 1.53 5.10 -52.49 -0.27 1.26 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.14 1.64 8.03 -52.49 -0.42 1.21 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -27.18 348.04 -6.91 -34.08 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.22 Total: 6.38 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.95 Total: -17.43 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.20 Total: -38.75 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.20 Total: -3.99 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.11 Total: -4.84 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.18 -6.91 -34.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.096 kcal (2) G-P(sol) polarization free energy of solvation -27.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds