Wall clock time and date at job start Tue Mar 31 2020 13:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.08998 * 109.47511 * 54.35542 * 3 2 1 5 5 C 1.50700 * 109.47219 * 174.35576 * 3 2 1 6 6 H 1.07997 * 119.99990 * 116.29906 * 5 3 2 7 7 C 1.37884 * 120.00031 * 296.30129 * 5 3 2 8 8 N 1.31508 * 119.99781 * 353.41762 * 7 5 3 9 9 Si 1.86804 * 119.99913 * 173.14094 * 7 5 3 10 10 H 1.48499 * 109.46786 * 180.27220 * 9 7 5 11 11 H 1.48493 * 109.47366 * 300.27474 * 9 7 5 12 12 H 1.48497 * 109.46922 * 60.27471 * 9 7 5 13 13 N 1.46904 * 109.47081 * 294.35597 * 3 2 1 14 14 C 1.46896 * 110.99885 * 154.23984 * 13 3 2 15 15 H 1.08999 * 109.47456 * 36.73792 * 14 13 3 16 16 C 1.53006 * 109.46774 * 276.74120 * 14 13 3 17 17 C 1.50701 * 109.47483 * 156.74388 * 14 13 3 18 18 C 1.38264 * 119.94029 * 39.71788 * 17 14 13 19 19 C 1.38151 * 120.05539 * 179.72683 * 18 17 14 20 20 C 1.38734 * 119.93577 * 0.55454 * 19 18 17 21 21 O 1.35901 * 120.05075 * 179.74686 * 20 19 18 22 22 C 1.42907 * 117.00024 * 359.97377 * 21 20 19 23 23 F 1.39900 * 109.46901 * 60.00231 * 22 21 20 24 24 F 1.39901 * 109.46860 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.46930 * 300.00208 * 22 21 20 26 26 C 1.38728 * 119.89532 * 359.72348 * 20 19 18 27 27 C 1.38150 * 119.94310 * 359.97438 * 26 20 19 28 28 H 1.09000 * 109.46936 * 305.09267 * 1 2 3 29 29 H 1.09003 * 109.46474 * 65.08806 * 1 2 3 30 30 H 1.08996 * 109.47157 * 185.08778 * 1 2 3 31 31 H 1.08993 * 109.47186 * 239.99989 * 2 1 3 32 32 H 1.09000 * 109.47047 * 119.99719 * 2 1 3 33 33 H 0.96997 * 120.00147 * 354.92090 * 8 7 5 34 34 H 1.00905 * 110.99468 * 278.18729 * 13 3 2 35 35 H 1.09002 * 109.47177 * 305.20320 * 16 14 13 36 36 H 1.08994 * 109.47492 * 65.20487 * 16 14 13 37 37 H 1.09001 * 109.47403 * 185.20971 * 16 14 13 38 38 H 1.08004 * 119.97535 * 0.02562 * 18 17 14 39 39 H 1.07995 * 120.03085 * 180.27545 * 19 18 17 40 40 H 1.07996 * 120.02966 * 179.97438 * 26 20 19 41 41 H 1.07996 * 119.97398 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9848 0.8351 5 6 3.5405 1.4448 0.1397 6 1 4.1565 1.8323 -0.6582 7 6 4.1269 0.9522 1.2863 8 7 3.3783 0.6007 2.3088 9 14 5.9841 0.7767 1.3843 10 1 6.3596 0.2224 2.7098 11 1 6.4519 -0.1399 0.3138 12 1 6.6171 2.1083 1.2073 13 7 1.6647 2.0946 -1.2618 14 6 1.5666 3.5505 -1.0930 15 1 2.3406 3.8896 -0.4045 16 6 0.1899 3.9067 -0.5282 17 6 1.7514 4.2246 -2.4281 18 6 1.1866 3.6736 -3.5635 19 6 1.3498 4.2926 -4.7877 20 6 2.0909 5.4619 -4.8790 21 8 2.2573 6.0700 -6.0829 22 6 1.6416 5.4498 -7.2136 23 9 0.2585 5.3839 -7.0137 24 9 1.9120 6.2012 -8.3623 25 9 2.1520 4.1569 -7.3717 26 6 2.6614 6.0096 -3.7392 27 6 2.4900 5.3901 -2.5164 28 1 -0.3633 0.5908 0.8409 29 1 -0.3632 0.4329 -0.9321 30 1 -0.3633 -1.0236 0.0911 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.4212 0.7563 2.2854 34 1 2.3137 1.8588 -1.9976 35 1 -0.5855 3.4874 -1.1693 36 1 0.0920 3.4959 0.4766 37 1 0.0824 4.9907 -0.4896 38 1 0.6132 2.7611 -3.4925 39 1 0.9048 3.8643 -5.6736 40 1 3.2391 6.9195 -3.8078 41 1 2.9336 5.8163 -1.6287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:15 Heat of formation + Delta-G solvation = -198.166601 kcal Electronic energy + Delta-G solvation = -26945.579290 eV Core-core repulsion = 22602.376586 eV Total energy + Delta-G solvation = -4343.202704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.49564 -49.21283 -49.08858 -41.38592 -39.57682 -37.98429 -35.30385 -33.36929 -32.16204 -31.22886 -29.79594 -27.48297 -26.96988 -25.02300 -24.34056 -23.80497 -21.77587 -21.38719 -20.68664 -20.20948 -20.05584 -19.12357 -17.80791 -17.26114 -16.66261 -16.30421 -16.04031 -15.79893 -15.73707 -15.59731 -15.56478 -15.49634 -15.25652 -15.17444 -15.11662 -14.73564 -14.44493 -14.28352 -14.15274 -14.02942 -13.82840 -13.31946 -13.03080 -12.70833 -12.57071 -12.54204 -12.31334 -12.07270 -11.97144 -11.88739 -11.61837 -11.40818 -10.83298 -10.43374 -10.09773 -9.47212 -9.13003 -8.47290 -6.30631 0.11945 0.26586 0.41881 1.52143 1.57600 1.76900 1.76985 2.54738 2.56783 2.72301 2.94641 3.19980 3.48252 3.63003 3.74119 3.76345 4.14746 4.31425 4.38547 4.43714 4.55005 4.57645 4.60323 4.73351 4.87804 4.89665 4.99609 5.04739 5.05492 5.19482 5.26046 5.31096 5.34629 5.40759 5.49232 5.62581 5.71424 5.88183 5.99637 6.05069 6.54150 6.61119 6.80982 7.49788 8.80127 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.003209 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.447935 B = 8724.566610 C = 9281.436247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.211 3.789 4 H 0.001 0.999 5 C -0.633 4.633 6 H 0.041 0.959 7 C -0.019 4.019 8 N -0.931 5.931 9 Si 1.102 2.898 10 H -0.286 1.286 11 H -0.276 1.276 12 H -0.275 1.275 13 N -0.663 5.663 14 C 0.128 3.872 15 H 0.028 0.972 16 C -0.123 4.123 17 C -0.099 4.099 18 C -0.063 4.063 19 C -0.192 4.192 20 C 0.086 3.914 21 O -0.315 6.315 22 C 0.607 3.393 23 F -0.164 7.164 24 F -0.129 7.129 25 F -0.166 7.166 26 C -0.120 4.120 27 C -0.082 4.082 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.330 0.670 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.158 0.842 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 11.197 -17.061 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.019 0.981 5 C -0.672 4.672 6 H 0.059 0.941 7 C -0.219 4.219 8 N -0.568 5.568 9 Si 0.925 3.075 10 H -0.212 1.212 11 H -0.201 1.201 12 H -0.201 1.201 13 N -0.292 5.292 14 C 0.018 3.982 15 H 0.046 0.954 16 C -0.181 4.181 17 C -0.100 4.100 18 C -0.081 4.081 19 C -0.210 4.210 20 C 0.044 3.956 21 O -0.235 6.235 22 C 0.517 3.483 23 F -0.146 7.146 24 F -0.111 7.111 25 F -0.148 7.148 26 C -0.138 4.138 27 C -0.100 4.100 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.176 0.824 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.540 10.700 -16.078 19.839 hybrid contribution -0.335 0.409 -0.846 0.998 sum -4.875 11.109 -16.924 20.823 Atomic orbital electron populations 1.21561 0.95414 0.99978 1.01281 1.21415 0.95365 0.98345 0.99235 1.19058 0.92010 0.91147 0.87622 0.98097 1.22961 0.94114 1.45651 1.04438 0.94114 1.26881 1.09870 0.93022 0.92170 1.70885 1.07735 1.45793 1.32358 0.83117 0.70877 0.77279 0.76194 1.21196 1.20129 1.20082 1.60948 1.53839 1.06392 1.08024 1.20265 0.97358 0.88419 0.92129 0.95360 1.21694 0.95636 1.00804 0.99963 1.20104 0.98549 0.96151 0.95187 1.20915 0.97480 0.99363 0.90378 1.21600 1.02940 0.96165 1.00312 1.18821 1.00063 0.93978 0.82698 1.86375 1.71395 1.51114 1.14651 1.19271 0.75209 0.74749 0.79090 1.93305 1.30817 1.95805 1.94707 1.93310 1.93854 1.76820 1.47091 1.93311 1.87035 1.39007 1.95482 1.20553 1.02194 1.02333 0.88743 1.21111 0.96888 0.94451 0.97581 0.94730 0.91652 0.93474 0.94271 0.94771 0.92717 0.85382 0.91606 0.94388 0.91387 0.84093 0.84193 0.82412 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 9.75 71.98 0.70 -3.95 16 2 C -0.10 -4.75 5.29 30.60 0.16 -4.59 16 3 C 0.21 9.93 1.41 44.17 0.06 9.99 16 4 H 0.00 0.06 6.45 -2.39 -0.02 0.05 16 5 C -0.63 -33.65 8.26 25.60 0.21 -33.44 16 6 H 0.04 2.17 7.71 -2.91 -0.02 2.15 16 7 C -0.02 -1.06 5.20 84.66 0.44 -0.62 16 8 N -0.93 -54.65 12.76 21.45 0.27 -54.37 16 9 Si 1.10 49.24 29.91 68.60 2.05 51.29 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.66 -25.51 4.98 -477.14 -2.38 -27.88 16 14 C 0.13 4.39 2.63 44.17 0.12 4.51 16 15 H 0.03 1.14 7.54 -2.39 -0.02 1.12 16 16 C -0.12 -3.77 9.33 71.98 0.67 -3.10 16 17 C -0.10 -2.84 4.72 -19.85 -0.09 -2.94 16 18 C -0.06 -1.67 9.03 22.26 0.20 -1.47 16 19 C -0.19 -4.61 8.26 22.37 0.18 -4.43 16 20 C 0.09 2.04 6.48 22.51 0.15 2.18 16 21 O -0.32 -6.87 10.37 -92.44 -0.96 -7.82 16 22 C 0.61 11.71 3.42 113.37 0.39 12.10 16 23 F -0.16 -3.15 15.56 44.97 0.70 -2.45 16 24 F -0.13 -2.30 17.53 44.97 0.79 -1.51 16 25 F -0.17 -3.36 15.56 44.97 0.70 -2.66 16 26 C -0.12 -2.68 9.99 22.37 0.22 -2.46 16 27 C -0.08 -2.06 9.66 22.25 0.22 -1.84 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 2.25 7.91 -2.39 -0.02 2.24 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.75 6.14 -2.39 -0.01 1.73 16 33 H 0.26 15.50 6.16 -92.71 -0.57 14.93 16 34 H 0.33 12.96 7.70 -89.69 -0.69 12.27 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.29 7.39 -2.39 -0.02 1.27 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.14 3.69 7.70 -2.91 -0.02 3.67 16 39 H 0.14 3.01 5.10 -2.91 -0.01 2.99 16 40 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.14 3.30 8.03 -2.91 -0.02 3.27 16 Total: -1.00 -58.27 348.04 5.38 -52.89 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.57 Total: 22.55 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 3.63 Total: -30.04 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.10 Total: -82.26 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.96 Total: -7.82 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 2.19 Total: -6.61 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Total: -58.27 5.38 -52.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.275 kcal (2) G-P(sol) polarization free energy of solvation -58.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds