Wall clock time and date at job start Tue Mar 31 2020 13:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.08995 * 109.47528 * 303.58557 * 3 2 1 5 5 C 1.50701 * 109.47174 * 183.58277 * 3 2 1 6 6 H 1.08002 * 120.00150 * 245.43787 * 5 3 2 7 7 C 1.37874 * 120.00103 * 65.44160 * 5 3 2 8 8 N 1.31515 * 120.00272 * 196.16057 * 7 5 3 9 9 Si 1.86801 * 120.00142 * 16.16241 * 7 5 3 10 10 H 1.48498 * 109.47274 * 87.23905 * 9 7 5 11 11 H 1.48490 * 109.47624 * 207.24555 * 9 7 5 12 12 H 1.48510 * 109.46804 * 327.24808 * 9 7 5 13 13 N 1.46907 * 109.46710 * 63.58770 * 3 2 1 14 14 C 1.46904 * 110.99316 * 261.94730 * 13 3 2 15 15 H 1.08991 * 109.47350 * 26.51493 * 14 13 3 16 16 C 1.53000 * 109.46910 * 266.50976 * 14 13 3 17 17 C 1.50695 * 109.46735 * 146.51603 * 14 13 3 18 18 C 1.38262 * 119.94690 * 39.72177 * 17 14 13 19 19 C 1.38151 * 120.05793 * 179.72263 * 18 17 14 20 20 C 1.38732 * 119.94167 * 0.55399 * 19 18 17 21 21 O 1.35900 * 120.05585 * 179.74583 * 20 19 18 22 22 C 1.42893 * 117.00226 * 359.97438 * 21 20 19 23 23 F 1.39905 * 109.47062 * 60.00114 * 22 21 20 24 24 F 1.39901 * 109.47531 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47221 * 300.00537 * 22 21 20 26 26 C 1.38736 * 119.88584 * 359.72059 * 20 19 18 27 27 C 1.38138 * 119.94760 * 359.97438 * 26 20 19 28 28 H 1.08997 * 109.47726 * 57.97688 * 1 2 3 29 29 H 1.08998 * 109.47528 * 177.98295 * 1 2 3 30 30 H 1.09004 * 109.46831 * 297.97916 * 1 2 3 31 31 H 1.09004 * 109.47131 * 240.00550 * 2 1 3 32 32 H 1.09006 * 109.47630 * 120.00739 * 2 1 3 33 33 H 0.97001 * 120.00080 * 179.97438 * 8 7 5 34 34 H 1.00903 * 110.99982 * 137.99751 * 13 3 2 35 35 H 1.09003 * 109.47006 * 180.02562 * 16 14 13 36 36 H 1.08999 * 109.47453 * 300.00710 * 16 14 13 37 37 H 1.09004 * 109.47181 * 60.00515 * 16 14 13 38 38 H 1.07999 * 119.97557 * 359.97438 * 18 17 14 39 39 H 1.07999 * 120.03345 * 180.27164 * 19 18 17 40 40 H 1.08004 * 120.02151 * 179.97438 * 26 20 19 41 41 H 1.07999 * 119.97483 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6252 1.9746 -0.8560 5 6 3.5444 1.4434 -0.0888 6 1 4.1338 1.8147 0.7365 7 6 4.1683 0.9703 -1.2236 8 7 5.4486 0.6711 -1.1940 9 14 3.1951 0.7542 -2.8034 10 1 3.1965 2.0296 -3.5641 11 1 3.8175 -0.3137 -3.6262 12 1 1.7971 0.3751 -2.4756 13 7 1.6223 2.1095 1.2405 14 6 0.4132 2.9151 1.0235 15 1 -0.1567 2.4987 0.1931 16 6 0.8122 4.3556 0.6968 17 6 -0.4319 2.8987 2.2711 18 6 0.1702 2.9722 3.5136 19 6 -0.6027 2.9630 4.6586 20 6 -1.9834 2.8685 4.5614 21 8 -2.7455 2.8541 5.6864 22 6 -2.0586 2.9391 6.9365 23 9 -1.3328 4.1340 6.9895 24 9 -2.9878 2.9118 7.9821 25 9 -1.1827 1.8556 7.0620 26 6 -2.5847 2.7891 3.3136 27 6 -1.8078 2.8050 2.1715 28 1 -0.3634 0.5449 -0.8712 29 1 -0.3634 -1.0270 -0.0362 30 1 -0.3633 0.4822 0.9076 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 5.8874 0.3379 -1.9923 34 1 2.3696 2.6731 1.6173 35 1 -0.0850 4.9536 0.5362 36 1 1.3822 4.7721 1.5273 37 1 1.4235 4.3676 -0.2056 38 1 1.2454 3.0408 3.5890 39 1 -0.1323 3.0249 5.6288 40 1 -3.6593 2.7150 3.2353 41 1 -2.2754 2.7437 1.1999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:19 Heat of formation + Delta-G solvation = -172.836816 kcal Electronic energy + Delta-G solvation = -27063.742629 eV Core-core repulsion = 22721.638307 eV Total energy + Delta-G solvation = -4342.104322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.62610 -48.36623 -48.20547 -40.35226 -38.45878 -36.54371 -33.48996 -31.88449 -31.12355 -30.05957 -28.48483 -26.56565 -26.06926 -23.47336 -22.94908 -22.47351 -20.65148 -19.74588 -19.71544 -19.32998 -19.08723 -17.17085 -16.73766 -15.69795 -15.56231 -15.38342 -15.07984 -14.99006 -14.68000 -14.60788 -14.52891 -14.32241 -14.14474 -13.96493 -13.69374 -13.47912 -13.30979 -13.00161 -12.72771 -12.69865 -12.44863 -12.09458 -11.85654 -11.57184 -11.31851 -11.09093 -10.88153 -10.82519 -10.59590 -10.17747 -9.88251 -9.43461 -9.17334 -9.05398 -8.49357 -8.34689 -7.54534 -6.18103 -4.13381 1.21108 1.32281 1.33342 2.67719 3.23263 3.33248 3.35432 3.59203 3.60058 3.85911 4.35877 4.63464 4.68078 4.83544 5.04574 5.11967 5.21976 5.34455 5.47066 5.54004 5.63989 5.88728 5.92534 6.03728 6.05328 6.10839 6.16315 6.25469 6.28093 6.38037 6.43189 6.65691 6.71301 6.74968 6.93681 6.99679 7.05697 7.41263 7.61494 7.91613 8.28078 8.54983 8.90638 9.48058 10.94726 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.003028 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.982603 B = 9243.341462 C = 9440.907606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.195 3.805 4 H 0.003 0.997 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.672 5.672 14 C 0.115 3.885 15 H 0.083 0.917 16 C -0.173 4.173 17 C -0.065 4.065 18 C -0.053 4.053 19 C -0.190 4.190 20 C 0.085 3.915 21 O -0.314 6.314 22 C 0.603 3.397 23 F -0.166 7.166 24 F -0.136 7.136 25 F -0.164 7.164 26 C -0.124 4.124 27 C -0.086 4.086 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.264 0.736 34 H 0.341 0.659 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 6.163 11.735 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C 0.086 3.914 4 H 0.021 0.979 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.175 1.175 13 N -0.303 5.303 14 C 0.004 3.996 15 H 0.101 0.899 16 C -0.232 4.232 17 C -0.066 4.066 18 C -0.071 4.071 19 C -0.208 4.208 20 C 0.044 3.956 21 O -0.234 6.234 22 C 0.512 3.488 23 F -0.149 7.149 24 F -0.118 7.118 25 F -0.146 7.146 26 C -0.143 4.143 27 C -0.105 4.105 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.160 0.840 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.070 5.520 11.907 21.532 hybrid contribution 0.202 0.533 -1.058 1.201 sum -16.869 6.053 10.849 20.950 Atomic orbital electron populations 1.21895 0.98714 0.99580 1.00579 1.21858 0.92652 0.99375 1.00913 1.19456 0.95266 0.90622 0.86037 0.97911 1.21166 0.89160 1.43578 1.03208 0.90619 1.24886 0.94702 0.93989 0.98836 1.69985 1.10839 1.42648 1.29045 0.87223 0.81908 0.77986 0.84006 1.20666 1.21420 1.17540 1.60622 1.06047 1.32583 1.31043 1.20616 0.93212 0.92532 0.93250 0.89862 1.22465 1.01390 0.96923 1.02385 1.20136 0.93306 0.97559 0.95635 1.20815 1.00417 0.95389 0.90505 1.21495 0.91707 1.06808 1.00810 1.18656 0.89799 1.03322 0.83843 1.86371 1.35870 1.89214 1.11937 1.19354 0.74689 0.74794 0.79915 1.93299 1.77983 1.47393 1.96178 1.93289 1.66666 1.96320 1.55498 1.93315 1.69687 1.55851 1.95774 1.20278 1.00508 1.04974 0.88496 1.20881 0.93118 0.98865 0.97617 0.94556 0.94713 0.92357 0.93156 0.92265 0.92602 0.83971 0.92872 0.92405 0.91671 0.84656 0.85349 0.84938 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.65 37.15 0.32 -2.33 16 2 C -0.11 -2.33 4.98 -26.73 -0.13 -2.46 16 3 C 0.19 4.25 1.70 -68.86 -0.12 4.14 16 4 H 0.00 0.07 6.14 -51.93 -0.32 -0.25 16 5 C -0.53 -14.05 8.99 -34.44 -0.31 -14.36 16 6 H 0.08 2.16 7.73 -52.49 -0.41 1.75 16 7 C 0.08 2.18 5.33 -17.82 -0.10 2.09 16 8 N -0.89 -26.21 13.96 55.43 0.77 -25.43 16 9 Si 0.86 20.44 25.86 -169.99 -4.40 16.05 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.25 -5.61 5.54 56.52 0.31 -5.30 16 13 N -0.67 -12.31 5.17 -102.17 -0.53 -12.84 16 14 C 0.11 1.73 1.64 -68.87 -0.11 1.62 16 15 H 0.08 1.29 5.88 -51.93 -0.31 0.99 16 16 C -0.17 -2.39 9.16 37.16 0.34 -2.05 16 17 C -0.07 -0.89 4.63 -104.60 -0.48 -1.37 16 18 C -0.05 -0.72 9.32 -39.60 -0.37 -1.09 16 19 C -0.19 -2.42 8.26 -39.43 -0.33 -2.75 16 20 C 0.09 1.07 6.48 -39.21 -0.25 0.81 16 21 O -0.31 -3.69 10.37 -19.42 -0.20 -3.89 16 22 C 0.60 6.40 3.42 101.05 0.35 6.74 16 23 F -0.17 -1.76 15.56 2.25 0.04 -1.72 16 24 F -0.14 -1.34 17.53 2.25 0.04 -1.30 16 25 F -0.16 -1.83 15.56 2.25 0.04 -1.79 16 26 C -0.12 -1.42 9.99 -39.43 -0.39 -1.82 16 27 C -0.09 -1.03 9.66 -39.61 -0.38 -1.41 16 28 H 0.04 0.61 7.91 -51.93 -0.41 0.20 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.99 6.44 -51.93 -0.33 0.65 16 31 H 0.05 1.13 5.02 -51.93 -0.26 0.87 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.34 6.33 7.34 -39.29 -0.29 6.04 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.14 1.81 7.51 -52.49 -0.39 1.42 16 39 H 0.13 1.52 5.10 -52.49 -0.27 1.25 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.13 1.32 8.03 -52.49 -0.42 0.90 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -28.02 340.14 -6.25 -34.27 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.17 Total: 5.78 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.97 Total: -14.24 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.25 Total: -38.27 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.11 Total: -4.82 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.40 Total: 16.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.02 -6.25 -34.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.567 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds