Wall clock time and date at job start Tue Mar 31 2020 13:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 H 1.08995 * 109.47528 * 303.58557 * 3 2 1 5 5 C 1.50701 * 109.47174 * 183.58277 * 3 2 1 6 6 H 1.08002 * 120.00150 * 245.43787 * 5 3 2 7 7 C 1.37874 * 120.00103 * 65.44160 * 5 3 2 8 8 N 1.31515 * 120.00272 * 196.16057 * 7 5 3 9 9 Si 1.86801 * 120.00142 * 16.16241 * 7 5 3 10 10 H 1.48498 * 109.47274 * 87.23905 * 9 7 5 11 11 H 1.48490 * 109.47624 * 207.24555 * 9 7 5 12 12 H 1.48510 * 109.46804 * 327.24808 * 9 7 5 13 13 N 1.46907 * 109.46710 * 63.58770 * 3 2 1 14 14 C 1.46904 * 110.99316 * 261.94730 * 13 3 2 15 15 H 1.08991 * 109.47350 * 26.51493 * 14 13 3 16 16 C 1.53000 * 109.46910 * 266.50976 * 14 13 3 17 17 C 1.50695 * 109.46735 * 146.51603 * 14 13 3 18 18 C 1.38262 * 119.94690 * 39.72177 * 17 14 13 19 19 C 1.38151 * 120.05793 * 179.72263 * 18 17 14 20 20 C 1.38732 * 119.94167 * 0.55399 * 19 18 17 21 21 O 1.35900 * 120.05585 * 179.74583 * 20 19 18 22 22 C 1.42893 * 117.00226 * 359.97438 * 21 20 19 23 23 F 1.39905 * 109.47062 * 60.00114 * 22 21 20 24 24 F 1.39901 * 109.47531 * 179.97438 * 22 21 20 25 25 F 1.39897 * 109.47221 * 300.00537 * 22 21 20 26 26 C 1.38736 * 119.88584 * 359.72059 * 20 19 18 27 27 C 1.38138 * 119.94760 * 359.97438 * 26 20 19 28 28 H 1.08997 * 109.47726 * 57.97688 * 1 2 3 29 29 H 1.08998 * 109.47528 * 177.98295 * 1 2 3 30 30 H 1.09004 * 109.46831 * 297.97916 * 1 2 3 31 31 H 1.09004 * 109.47131 * 240.00550 * 2 1 3 32 32 H 1.09006 * 109.47630 * 120.00739 * 2 1 3 33 33 H 0.97001 * 120.00080 * 179.97438 * 8 7 5 34 34 H 1.00903 * 110.99982 * 137.99751 * 13 3 2 35 35 H 1.09003 * 109.47006 * 180.02562 * 16 14 13 36 36 H 1.08999 * 109.47453 * 300.00710 * 16 14 13 37 37 H 1.09004 * 109.47181 * 60.00515 * 16 14 13 38 38 H 1.07999 * 119.97557 * 359.97438 * 18 17 14 39 39 H 1.07999 * 120.03345 * 180.27164 * 19 18 17 40 40 H 1.08004 * 120.02151 * 179.97438 * 26 20 19 41 41 H 1.07999 * 119.97483 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6252 1.9746 -0.8560 5 6 3.5444 1.4434 -0.0888 6 1 4.1338 1.8147 0.7365 7 6 4.1683 0.9703 -1.2236 8 7 5.4486 0.6711 -1.1940 9 14 3.1951 0.7542 -2.8034 10 1 3.1965 2.0296 -3.5641 11 1 3.8175 -0.3137 -3.6262 12 1 1.7971 0.3751 -2.4756 13 7 1.6223 2.1095 1.2405 14 6 0.4132 2.9151 1.0235 15 1 -0.1567 2.4987 0.1931 16 6 0.8122 4.3556 0.6968 17 6 -0.4319 2.8987 2.2711 18 6 0.1702 2.9722 3.5136 19 6 -0.6027 2.9630 4.6586 20 6 -1.9834 2.8685 4.5614 21 8 -2.7455 2.8541 5.6864 22 6 -2.0586 2.9391 6.9365 23 9 -1.3328 4.1340 6.9895 24 9 -2.9878 2.9118 7.9821 25 9 -1.1827 1.8556 7.0620 26 6 -2.5847 2.7891 3.3136 27 6 -1.8078 2.8050 2.1715 28 1 -0.3634 0.5449 -0.8712 29 1 -0.3634 -1.0270 -0.0362 30 1 -0.3633 0.4822 0.9076 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 5.8874 0.3379 -1.9923 34 1 2.3696 2.6731 1.6173 35 1 -0.0850 4.9536 0.5362 36 1 1.3822 4.7721 1.5273 37 1 1.4235 4.3676 -0.2056 38 1 1.2454 3.0408 3.5890 39 1 -0.1323 3.0249 5.6288 40 1 -3.6593 2.7150 3.2353 41 1 -2.2754 2.7437 1.1999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:18 Heat of formation + Delta-G solvation = -189.254141 kcal Electronic energy + Delta-G solvation = -27064.454538 eV Core-core repulsion = 22721.638307 eV Total energy + Delta-G solvation = -4342.816230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.46933 -49.18910 -49.06405 -41.29826 -39.57069 -37.89888 -35.05944 -33.73411 -32.07364 -31.33648 -29.71984 -28.22875 -26.99255 -24.64852 -24.22372 -23.77119 -21.81291 -21.32488 -20.63476 -20.18068 -20.00030 -18.99476 -17.75373 -17.14305 -16.79574 -16.25938 -16.25812 -15.88218 -15.67454 -15.54862 -15.47940 -15.42024 -15.18912 -15.08421 -15.06631 -14.77055 -14.47281 -14.21504 -14.16684 -13.90487 -13.74133 -13.62383 -13.24758 -12.99096 -12.64124 -12.46789 -12.41423 -12.19676 -11.94862 -11.74660 -11.49574 -11.17940 -11.04526 -10.55002 -9.99284 -9.36200 -9.02930 -8.30599 -6.29255 0.23885 0.37869 0.46629 1.35458 1.39020 1.48288 1.81785 2.36319 2.64268 2.75871 2.98187 3.04326 3.52143 3.70432 3.81604 3.95977 4.17158 4.33776 4.37866 4.49273 4.54454 4.58263 4.58711 4.66805 4.87364 4.91498 4.96377 5.07383 5.11686 5.22856 5.26121 5.32450 5.37095 5.45768 5.47161 5.57920 5.71743 5.86014 5.98381 6.08022 6.54242 6.73200 6.91445 7.36526 8.85863 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025311 B = 0.003028 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.982603 B = 9243.341462 C = 9440.907606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.203 3.797 4 H 0.006 0.994 5 C -0.533 4.533 6 H 0.037 0.963 7 C 0.022 3.978 8 N -0.941 5.941 9 Si 0.924 3.076 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.225 1.225 13 N -0.674 5.674 14 C 0.117 3.883 15 H 0.087 0.913 16 C -0.169 4.169 17 C -0.077 4.077 18 C -0.066 4.066 19 C -0.197 4.197 20 C 0.079 3.921 21 O -0.315 6.315 22 C 0.607 3.393 23 F -0.166 7.166 24 F -0.130 7.130 25 F -0.168 7.168 26 C -0.119 4.119 27 C -0.080 4.080 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.336 0.664 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.159 0.841 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.172 6.429 11.232 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.024 0.976 5 C -0.571 4.571 6 H 0.055 0.945 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.748 3.252 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.147 1.147 13 N -0.304 5.304 14 C 0.007 3.993 15 H 0.105 0.895 16 C -0.227 4.227 17 C -0.077 4.077 18 C -0.084 4.084 19 C -0.215 4.215 20 C 0.037 3.963 21 O -0.235 6.235 22 C 0.516 3.484 23 F -0.148 7.148 24 F -0.112 7.112 25 F -0.150 7.150 26 C -0.138 4.138 27 C -0.098 4.098 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.176 0.824 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.542 5.799 11.425 24.210 hybrid contribution 1.289 0.493 -0.746 1.569 sum -19.252 6.292 10.679 22.897 Atomic orbital electron populations 1.21785 0.95329 1.01077 1.01572 1.21776 0.95659 0.98109 0.99380 1.19273 0.92029 0.91745 0.87622 0.97605 1.21512 0.91760 1.42064 1.01792 0.94500 1.25741 0.95571 0.93988 1.02413 1.70129 1.12978 1.44882 1.30005 0.86219 0.81688 0.77902 0.79387 1.20099 1.21818 1.14731 1.60581 1.06969 1.33638 1.29182 1.20637 0.91763 0.92556 0.94325 0.89494 1.22402 1.02173 0.96677 1.01471 1.20006 0.94041 0.99103 0.94593 1.20805 1.00215 0.96300 0.91103 1.21539 0.92150 1.07090 1.00727 1.18862 0.89718 1.03154 0.84553 1.86364 1.35920 1.89174 1.12060 1.19287 0.74676 0.74654 0.79777 1.93301 1.78006 1.47362 1.96162 1.93305 1.66426 1.96284 1.55147 1.93309 1.69848 1.56062 1.95773 1.20594 1.01839 1.03601 0.87739 1.21123 0.92193 0.97571 0.98948 0.93264 0.93050 0.91580 0.94549 0.94080 0.92677 0.84573 0.90430 0.92384 0.93481 0.85563 0.85076 0.82353 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.65 71.98 0.62 -3.86 16 2 C -0.11 -4.55 4.98 30.59 0.15 -4.40 16 3 C 0.20 8.73 1.70 44.17 0.08 8.81 16 4 H 0.01 0.27 6.14 -2.39 -0.01 0.26 16 5 C -0.53 -28.88 8.99 25.60 0.23 -28.65 16 6 H 0.04 2.22 7.73 -2.91 -0.02 2.20 16 7 C 0.02 1.21 5.33 84.65 0.45 1.66 16 8 N -0.94 -57.47 13.96 21.45 0.30 -57.17 16 9 Si 0.92 42.07 25.86 68.60 1.77 43.85 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.22 -9.18 5.54 99.48 0.55 -8.63 16 13 N -0.67 -24.43 5.17 -477.16 -2.47 -26.90 16 14 C 0.12 3.31 1.64 44.17 0.07 3.38 16 15 H 0.09 2.41 5.88 -2.39 -0.01 2.40 16 16 C -0.17 -4.40 9.16 71.98 0.66 -3.74 16 17 C -0.08 -1.91 4.63 -19.85 -0.09 -2.00 16 18 C -0.07 -1.72 9.32 22.25 0.21 -1.51 16 19 C -0.20 -4.77 8.26 22.37 0.18 -4.59 16 20 C 0.08 1.78 6.48 22.51 0.15 1.93 16 21 O -0.31 -6.72 10.37 -92.42 -0.96 -7.68 16 22 C 0.61 11.95 3.42 113.37 0.39 12.34 16 23 F -0.17 -3.31 15.56 44.97 0.70 -2.61 16 24 F -0.13 -2.35 17.53 44.97 0.79 -1.56 16 25 F -0.17 -3.55 15.56 44.97 0.70 -2.85 16 26 C -0.12 -2.31 9.99 22.37 0.22 -2.09 16 27 C -0.08 -1.61 9.66 22.25 0.22 -1.39 16 28 H 0.05 1.45 7.91 -2.39 -0.02 1.43 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 2.01 6.44 -2.38 -0.02 1.99 16 31 H 0.04 1.57 5.02 -2.39 -0.01 1.56 16 32 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.34 12.80 7.34 -89.69 -0.66 12.14 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.13 3.43 7.51 -2.91 -0.02 3.41 16 39 H 0.13 3.01 5.10 -2.91 -0.01 3.00 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.16 2.36 8.03 -2.91 -0.02 2.34 16 Total: -1.00 -61.44 340.14 4.63 -56.81 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.26 Total: 22.22 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 3.54 Total: -24.11 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -2.17 Total: -84.07 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.96 Total: -7.68 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 2.19 Total: -7.01 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.77 Total: 43.85 kcal Total: -61.44 4.63 -56.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.440 kcal (2) G-P(sol) polarization free energy of solvation -61.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds