Wall clock time and date at job start Tue Mar 31 2020 11:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47131 * 2 1 4 4 C 1.33079 * 120.00064 * 184.74140 * 3 2 1 5 5 C 1.50701 * 120.00216 * 174.45108 * 4 3 2 6 6 C 1.46955 * 119.99880 * 354.72399 * 4 3 2 7 7 O 1.21533 * 119.99921 * 4.84781 * 6 4 3 8 8 O 1.34798 * 119.99673 * 184.84494 * 6 4 3 9 9 C 1.45203 * 116.99438 * 180.02562 * 8 6 4 10 10 C 1.50701 * 109.46810 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00021 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00018 * 179.97438 * 10 9 8 13 13 C 1.39233 * 120.00071 * 176.04199 * 12 10 9 14 14 C 1.39485 * 119.83310 * 215.15270 * 13 12 10 15 15 C 1.36380 * 120.16743 * 179.76200 * 14 13 12 16 16 C 1.40867 * 119.83023 * 0.50564 * 15 14 13 17 17 C 1.41144 * 120.16654 * 179.72238 * 16 15 14 18 18 H 1.08009 * 119.99984 * 213.95893 * 17 16 15 19 19 C 1.39903 * 120.00106 * 33.95667 * 17 16 15 20 20 N 1.30873 * 119.99852 * 5.78184 * 19 17 16 21 21 Si 1.86803 * 120.00355 * 185.77763 * 19 17 16 22 22 H 1.48499 * 109.47068 * 89.99833 * 21 19 17 23 23 H 1.48493 * 109.47229 * 210.00225 * 21 19 17 24 24 H 1.48501 * 109.47183 * 330.00286 * 21 19 17 25 25 C 1.40872 * 119.66964 * 359.74806 * 16 15 14 26 26 C 1.36374 * 119.83158 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47606 * 59.99329 * 1 2 3 28 28 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47106 * 299.99619 * 1 2 3 30 30 H 1.09001 * 109.46641 * 240.00493 * 2 1 3 31 31 H 1.08996 * 109.47145 * 120.00566 * 2 1 3 32 32 H 1.07999 * 119.99529 * 4.74080 * 3 2 1 33 33 H 1.09000 * 109.47165 * 89.99412 * 5 4 3 34 34 H 1.08995 * 109.47297 * 210.00050 * 5 4 3 35 35 H 1.09004 * 109.46425 * 329.99964 * 5 4 3 36 36 H 1.09002 * 109.47067 * 299.99433 * 9 8 6 37 37 H 1.08991 * 109.47520 * 59.99818 * 9 8 6 38 38 H 0.96995 * 120.00051 * 356.04169 * 12 10 9 39 39 H 1.08000 * 119.91630 * 0.02562 * 14 13 12 40 40 H 1.08000 * 120.08539 * 180.24919 * 15 14 13 41 41 H 0.96999 * 119.99696 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.08262 * 179.97438 * 25 16 15 43 43 H 1.07993 * 119.91823 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 3.3370 1.6653 -0.0953 5 6 3.8307 3.0836 -0.2213 6 6 4.2960 0.5519 -0.0836 7 8 3.8950 -0.5954 -0.0759 8 8 5.6204 0.8031 -0.0815 9 6 6.5090 -0.3452 -0.0704 10 6 7.9401 0.1271 -0.0690 11 8 8.1867 1.3146 -0.0771 12 7 8.9458 -0.7700 -0.0587 13 6 10.2664 -0.3364 -0.1406 14 6 11.2056 -1.0997 -0.8340 15 6 12.4999 -0.6790 -0.9226 16 6 12.8895 0.5244 -0.3027 17 6 14.2284 0.9635 -0.3850 18 1 14.6740 1.4959 0.4425 19 6 14.9784 0.7093 -1.5383 20 7 14.4078 0.1659 -2.5833 21 14 16.7941 1.1455 -1.5869 22 1 17.5941 -0.0119 -1.1117 23 1 17.1858 1.4796 -2.9797 24 1 17.0458 2.3154 -0.7076 25 6 11.9363 1.2872 0.4003 26 6 10.6446 0.8565 0.4755 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.3335 2.2406 0.0773 33 1 4.0113 3.4951 0.7718 34 1 4.7580 3.0961 -0.7940 35 1 3.0795 3.6856 -0.7328 36 1 6.3224 -0.9404 0.8235 37 1 6.3277 -0.9536 -0.9563 38 1 8.7497 -1.7177 0.0057 39 1 10.9063 -2.0241 -1.3054 40 1 13.2251 -1.2691 -1.4632 41 1 14.9277 -0.0100 -3.3830 42 1 12.2279 2.2106 0.8784 43 1 9.9128 1.4399 1.0143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060094526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:58 Heat of formation + Delta-G solvation = -90.045856 kcal Electronic energy + Delta-G solvation = -24930.997759 eV Core-core repulsion = 21134.340263 eV Total energy + Delta-G solvation = -3796.657496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77298 -39.59793 -37.52778 -36.83453 -35.59023 -34.47456 -33.00625 -32.70388 -29.86612 -29.52766 -28.18773 -27.24387 -25.00398 -23.93167 -22.29368 -21.68174 -20.84819 -19.96286 -19.60343 -17.57726 -17.39219 -17.04074 -16.78104 -16.12439 -15.67467 -15.21535 -15.12736 -14.54052 -14.34550 -14.11546 -13.93485 -13.50861 -13.29849 -13.16461 -12.77302 -12.68034 -12.65181 -12.47818 -12.13459 -12.05390 -11.79508 -11.62529 -11.42141 -11.41342 -11.16114 -11.06120 -10.82518 -10.76383 -10.32987 -10.02736 -9.53394 -9.46670 -9.38973 -9.18769 -8.93775 -7.58771 -6.94056 -6.68775 -4.35539 0.86680 2.28297 2.48273 2.67413 2.96237 3.05051 3.08790 3.12339 3.27645 3.68331 3.95844 4.37195 4.50653 4.65528 4.75546 4.84724 4.93008 4.98819 5.03403 5.04615 5.17801 5.42439 5.50222 5.62773 5.65088 5.71824 5.75688 5.88327 6.00369 6.13309 6.15778 6.32660 6.39947 6.68110 6.86725 7.02618 7.15017 7.24906 7.54201 7.58003 7.66751 7.81568 8.01964 8.17501 8.26508 8.55855 8.65234 8.88417 8.95314 10.25911 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.038678 B = 0.002030 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.751938 B =13791.189601 C =14130.218683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.059 4.059 4 C -0.166 4.166 5 C -0.113 4.113 6 C 0.498 3.502 7 O -0.510 6.510 8 O -0.324 6.324 9 C 0.053 3.947 10 C 0.498 3.502 11 O -0.508 6.508 12 N -0.645 5.645 13 C -0.001 4.001 14 C -0.116 4.116 15 C -0.141 4.141 16 C 0.106 3.894 17 C -0.462 4.462 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.807 5.807 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.207 4.207 26 C -0.081 4.081 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.279 0.721 42 H 0.097 0.903 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.082 -1.529 3.251 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.077 4.077 4 C -0.168 4.168 5 C -0.169 4.169 6 C 0.344 3.656 7 O -0.400 6.400 8 O -0.239 6.239 9 C -0.025 4.025 10 C 0.283 3.717 11 O -0.383 6.383 12 N -0.290 5.290 13 C -0.093 4.093 14 C -0.136 4.136 15 C -0.161 4.161 16 C 0.104 3.896 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.145 4.145 20 N -0.434 5.434 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.227 4.227 26 C -0.101 4.101 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.231 0.769 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.946 -1.069 2.986 21.184 hybrid contribution 0.713 -0.469 -0.226 0.883 sum -20.233 -1.537 2.760 20.478 Atomic orbital electron populations 1.21894 0.95628 1.02079 1.01726 1.20927 0.95227 0.93354 1.04307 1.23888 0.94173 0.99378 0.90280 1.20804 0.92132 0.94671 1.09146 1.20751 1.02451 0.90678 1.03048 1.21496 0.81879 0.89117 0.73061 1.90840 1.79525 1.23337 1.46347 1.86660 1.16622 1.36843 1.83730 1.22705 0.87781 0.87354 1.04672 1.19941 0.85807 0.87161 0.78771 1.90737 1.84052 1.16043 1.47451 1.42770 1.04936 1.09066 1.72238 1.17181 0.81760 1.00654 1.09730 1.20261 0.94308 0.99216 0.99802 1.20930 0.94428 0.97040 1.03664 1.17711 0.92898 0.89722 0.89285 1.19521 0.96196 1.32412 1.01142 0.90449 1.25884 1.00420 0.93170 0.94996 1.69788 1.37393 1.33249 1.02952 0.86224 0.81950 0.79748 0.78227 1.19437 1.20339 1.18700 1.20785 0.92606 1.00474 1.08859 1.20404 0.95928 0.95348 0.98432 0.92642 0.92333 0.92687 0.89162 0.89417 0.84667 0.90889 0.90173 0.91328 0.88462 0.88313 0.76888 0.88967 0.86020 0.91009 0.88481 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.85 37.16 0.37 -0.57 16 2 C -0.10 -0.84 4.51 -27.88 -0.13 -0.96 16 3 C -0.06 -0.46 9.25 -36.10 -0.33 -0.80 16 4 C -0.17 -1.68 5.99 -102.89 -0.62 -2.29 16 5 C -0.11 -1.01 9.82 36.01 0.35 -0.66 16 6 C 0.50 6.37 7.84 34.26 0.27 6.63 16 7 O -0.51 -6.86 12.89 -19.29 -0.25 -7.11 16 8 O -0.32 -4.71 9.07 -47.44 -0.43 -5.14 16 9 C 0.05 0.69 5.96 36.01 0.21 0.91 16 10 C 0.50 8.69 7.74 -10.98 -0.08 8.60 16 11 O -0.51 -11.13 13.94 -14.11 -0.20 -11.33 16 12 N -0.65 -11.03 5.30 -9.74 -0.05 -11.08 16 13 C 0.00 -0.03 6.30 -83.57 -0.53 -0.56 16 14 C -0.12 -2.59 9.90 -39.79 -0.39 -2.99 16 15 C -0.14 -3.57 8.57 -39.26 -0.34 -3.91 16 16 C 0.11 2.84 5.51 -106.80 -0.59 2.25 16 17 C -0.46 -12.26 9.03 -37.86 -0.34 -12.60 16 18 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 19 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 20 N -0.81 -20.97 10.94 55.55 0.61 -20.36 16 21 Si 0.91 18.82 29.56 -169.99 -5.03 13.80 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 25 C -0.21 -5.23 9.74 -39.26 -0.38 -5.61 16 26 C -0.08 -1.94 8.61 -39.79 -0.34 -2.28 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.87 7.11 -51.93 -0.37 0.50 16 31 H 0.09 0.83 7.34 -51.93 -0.38 0.45 16 32 H 0.14 0.70 7.99 -52.49 -0.42 0.29 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 35 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 5.11 8.82 -40.82 -0.36 4.75 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 3.17 6.44 -52.49 -0.34 2.83 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.11 2.53 6.24 -52.49 -0.33 2.20 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -31.52 367.82 -8.71 -40.23 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.95 Total: 8.58 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.96 Total: -13.13 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.56 Total: -31.44 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.88 Total: -23.58 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.52 -8.71 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060094526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.815 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds