Wall clock time and date at job start Tue Mar 31 2020 11:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47085 * 2 1 4 4 C 1.50700 * 109.46903 * 180.02562 * 3 2 1 5 5 C 1.33078 * 119.99728 * 125.00453 * 4 3 2 6 6 C 1.46953 * 119.99659 * 179.97438 * 5 4 3 7 7 O 1.21538 * 120.00108 * 0.02562 * 6 5 4 8 8 O 1.34803 * 120.00304 * 179.97438 * 6 5 4 9 9 C 1.45201 * 117.00306 * 185.07572 * 8 6 5 10 10 C 1.50702 * 109.46777 * 184.91956 * 9 8 6 11 11 O 1.21275 * 120.00161 * 4.98495 * 10 9 8 12 12 N 1.34775 * 119.99249 * 184.98363 * 10 9 8 13 13 C 1.37134 * 120.00534 * 3.75866 * 12 10 9 14 14 H 1.07997 * 120.00293 * 308.19598 * 13 12 10 15 15 C 1.38887 * 120.00040 * 128.19777 * 13 12 10 16 16 N 1.31422 * 120.00305 * 173.09405 * 15 13 12 17 17 Si 1.86803 * 120.00094 * 353.09296 * 15 13 12 18 18 H 1.48505 * 109.46976 * 95.34256 * 17 15 13 19 19 H 1.48500 * 109.47373 * 215.34334 * 17 15 13 20 20 H 1.48502 * 109.46918 * 335.34616 * 17 15 13 21 21 C 1.39794 * 119.99374 * 183.76322 * 12 10 9 22 22 C 1.38958 * 120.07628 * 171.70058 * 21 12 10 23 23 C 1.38086 * 119.92171 * 180.23086 * 22 21 12 24 24 C 1.38310 * 120.07556 * 359.46355 * 23 22 21 25 25 C 1.38304 * 120.15499 * 0.55601 * 24 23 22 26 26 C 1.38081 * 120.07684 * 359.70095 * 25 24 23 27 27 H 1.09004 * 109.46888 * 299.99974 * 1 2 3 28 28 H 1.09002 * 109.47554 * 59.99469 * 1 2 3 29 29 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46888 * 240.00026 * 2 1 3 31 31 H 1.08996 * 109.47423 * 119.99829 * 2 1 3 32 32 H 1.08996 * 109.47037 * 60.00097 * 3 2 1 33 33 H 1.09005 * 109.46932 * 300.00379 * 3 2 1 34 34 H 1.08001 * 119.99896 * 304.99627 * 4 3 2 35 35 H 1.08001 * 120.00376 * 359.97438 * 5 4 3 36 36 H 1.09004 * 109.47059 * 64.92184 * 9 8 6 37 37 H 1.08995 * 109.46773 * 304.91853 * 9 8 6 38 38 H 0.97006 * 120.00254 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.04134 * 359.94556 * 22 21 12 40 40 H 1.08002 * 119.96249 * 179.74369 * 23 22 21 41 41 H 1.08005 * 119.92057 * 180.25643 * 24 23 22 42 42 H 1.08001 * 119.96119 * 179.72827 * 25 24 23 43 43 H 1.08004 * 120.03487 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2119 2.1038 -0.9449 6 6 5.6815 2.1042 -0.9451 7 8 6.2895 1.5002 -0.0833 8 8 6.3552 2.7735 -1.9018 9 6 7.8008 2.6380 -1.9075 10 6 8.3860 3.5438 -2.9603 11 8 7.6668 4.3012 -3.5765 12 7 9.7087 3.5119 -3.2169 13 6 10.5100 2.6022 -2.5757 14 1 10.4818 2.5222 -1.4991 15 6 11.3578 1.7839 -3.3109 16 7 12.2220 1.0096 -2.6938 17 14 11.2697 1.7838 -5.1768 18 1 12.2892 2.7168 -5.7205 19 1 11.5321 0.4132 -5.6847 20 1 9.9179 2.2214 -5.6085 21 6 10.2639 4.4064 -4.1366 22 6 11.6436 4.4943 -4.2768 23 6 12.1888 5.3823 -5.1829 24 6 11.3629 6.1758 -5.9584 25 6 9.9893 6.0912 -5.8212 26 6 9.4375 5.2092 -4.9134 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 4.0873 0.9060 0.7653 35 1 3.6716 2.6401 -1.7109 36 1 8.0680 1.6045 -2.1280 37 1 8.1955 2.9148 -0.9299 38 1 12.8139 0.4378 -3.2073 39 1 12.2890 3.8721 -3.6744 40 1 13.2611 5.4541 -5.2893 41 1 11.7919 6.8665 -6.6692 42 1 9.3475 6.7154 -6.4253 43 1 8.3647 5.1433 -4.8071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061385480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:22 Heat of formation + Delta-G solvation = -62.638413 kcal Electronic energy + Delta-G solvation = -25645.007494 eV Core-core repulsion = 21849.538474 eV Total energy + Delta-G solvation = -3795.469020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.40221 -39.81265 -37.66076 -36.62161 -35.82426 -35.20620 -32.64998 -32.31790 -30.18234 -29.99097 -28.15173 -26.98063 -25.31853 -23.18290 -22.05835 -21.52316 -21.22554 -19.66410 -19.45095 -18.27084 -17.76087 -16.43568 -16.36137 -16.16383 -15.76836 -15.52147 -15.21756 -14.53867 -14.40223 -14.10291 -13.85654 -13.66954 -13.36372 -13.10800 -13.00829 -12.77459 -12.70095 -12.47869 -12.10237 -12.05530 -11.95307 -11.62443 -11.51761 -11.40327 -11.06197 -11.04771 -10.75838 -10.40335 -10.36754 -10.29622 -10.17548 -9.61779 -9.57446 -9.02833 -8.49810 -8.08419 -7.17980 -6.65474 -4.59069 1.09875 1.96630 2.12701 2.71424 3.07468 3.09380 3.19401 3.28358 3.38272 4.00496 4.07796 4.51357 4.55037 4.60569 4.71760 4.79358 4.94778 5.07990 5.21963 5.27511 5.32554 5.41489 5.48046 5.57882 5.65451 5.70190 5.71228 5.76926 5.83022 5.87067 5.94293 6.15250 6.23412 6.24879 6.34448 6.48774 6.65946 6.75382 7.10897 7.18579 7.24098 7.30164 7.64815 7.86724 7.94570 8.09856 8.64862 8.94945 9.21174 10.37517 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.002879 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.513508 B = 9722.275172 C =10574.064006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.100 4.100 4 C -0.060 4.060 5 C -0.187 4.187 6 C 0.492 3.508 7 O -0.513 6.513 8 O -0.334 6.334 9 C 0.070 3.930 10 C 0.499 3.501 11 O -0.541 6.541 12 N -0.401 5.401 13 C -0.380 4.380 14 H 0.112 0.888 15 C 0.086 3.914 16 N -0.851 5.851 17 Si 0.868 3.132 18 H -0.250 1.250 19 H -0.286 1.286 20 H -0.259 1.259 21 C 0.155 3.845 22 C -0.151 4.151 23 C -0.107 4.107 24 C -0.168 4.168 25 C -0.110 4.110 26 C -0.183 4.183 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.281 0.719 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 0.943 1.653 14.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.137 4.137 4 C -0.079 4.079 5 C -0.206 4.206 6 C 0.337 3.663 7 O -0.404 6.404 8 O -0.250 6.250 9 C -0.006 4.006 10 C 0.290 3.710 11 O -0.423 6.423 12 N -0.112 5.112 13 C -0.506 4.506 14 H 0.130 0.870 15 C -0.125 4.125 16 N -0.483 5.483 17 Si 0.694 3.306 18 H -0.175 1.175 19 H -0.213 1.213 20 H -0.183 1.183 21 C 0.059 3.941 22 C -0.172 4.172 23 C -0.126 4.126 24 C -0.187 4.187 25 C -0.129 4.129 26 C -0.202 4.202 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.336 0.941 1.667 14.464 hybrid contribution 0.650 -0.241 -0.797 1.056 sum -13.686 0.700 0.870 13.732 Atomic orbital electron populations 1.21781 0.95434 1.01868 1.01948 1.21495 0.96007 0.95729 1.02824 1.20906 0.91032 0.98123 1.03591 1.23852 0.96278 0.92386 0.95383 1.21984 0.89766 1.05799 1.03002 1.21551 0.89809 0.75893 0.79013 1.90862 1.70579 1.41706 1.37249 1.86557 1.21919 1.65330 1.51156 1.22589 0.75794 1.02057 1.00140 1.20211 0.82103 0.84024 0.84660 1.90251 1.59973 1.41224 1.50841 1.41234 1.05324 1.28736 1.35887 1.19102 1.23096 1.14626 0.93752 0.87027 1.25452 0.94129 0.93433 0.99473 1.69662 1.18245 1.23088 1.37296 0.87002 0.81328 0.77844 0.84463 1.17477 1.21282 1.18255 1.18430 0.92529 0.91034 0.92097 1.21093 0.93993 1.01154 1.00923 1.20829 0.99035 0.96263 0.96424 1.20941 0.94004 1.01850 1.01931 1.21015 0.94624 0.98819 0.98416 1.22773 1.04083 0.96954 0.96431 0.92634 0.92563 0.92552 0.91492 0.91481 0.89698 0.90528 0.85311 0.84309 0.87291 0.88223 0.90827 0.84185 0.86771 0.87280 0.86848 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 3 C -0.10 -0.70 5.67 -27.88 -0.16 -0.85 16 4 C -0.06 -0.60 9.09 -36.10 -0.33 -0.93 16 5 C -0.19 -2.27 9.76 -37.85 -0.37 -2.64 16 6 C 0.49 8.24 7.90 34.26 0.27 8.51 16 7 O -0.51 -9.72 15.92 -19.29 -0.31 -10.03 16 8 O -0.33 -6.36 9.77 -47.44 -0.46 -6.82 16 9 C 0.07 1.43 4.87 36.01 0.18 1.61 16 10 C 0.50 11.50 7.65 -10.99 -0.08 11.42 16 11 O -0.54 -12.93 12.92 -14.05 -0.18 -13.11 16 12 N -0.40 -9.71 2.26 -58.98 -0.13 -9.84 16 13 C -0.38 -9.59 7.96 -14.94 -0.12 -9.71 16 14 H 0.11 2.92 7.90 -52.49 -0.41 2.51 16 15 C 0.09 2.21 4.29 -17.49 -0.08 2.13 16 16 N -0.85 -22.57 13.96 55.49 0.77 -21.80 16 17 Si 0.87 20.64 24.15 -169.99 -4.11 16.54 16 18 H -0.25 -5.73 6.06 56.52 0.34 -5.39 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.26 -6.48 6.90 56.52 0.39 -6.09 16 21 C 0.16 3.65 4.40 -83.69 -0.37 3.28 16 22 C -0.15 -3.38 5.77 -39.37 -0.23 -3.61 16 23 C -0.11 -2.06 9.79 -39.61 -0.39 -2.45 16 24 C -0.17 -3.01 10.04 -39.53 -0.40 -3.40 16 25 C -0.11 -2.07 10.04 -39.61 -0.40 -2.47 16 26 C -0.18 -4.03 9.03 -39.37 -0.36 -4.38 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.49 7.82 -51.93 -0.41 0.09 16 34 H 0.13 1.36 7.49 -52.49 -0.39 0.97 16 35 H 0.14 1.43 7.87 -52.49 -0.41 1.02 16 36 H 0.11 2.22 7.90 -51.93 -0.41 1.81 16 37 H 0.10 1.96 7.95 -51.93 -0.41 1.54 16 38 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.14 3.30 5.69 -52.49 -0.30 3.00 16 40 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.18 4.06 4.58 -56.01 -0.26 3.81 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -29.65 359.70 -7.62 -37.27 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.02 Total: 7.32 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.61 Total: -4.96 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.64 Total: -31.64 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.95 Total: -29.96 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.11 Total: 16.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.65 -7.62 -37.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061385480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.363 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds