Wall clock time and date at job start Tue Mar 31 2020 11:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47085 * 2 1 4 4 C 1.50700 * 109.46903 * 180.02562 * 3 2 1 5 5 C 1.33078 * 119.99728 * 125.00453 * 4 3 2 6 6 C 1.46953 * 119.99659 * 179.97438 * 5 4 3 7 7 O 1.21538 * 120.00108 * 0.02562 * 6 5 4 8 8 O 1.34803 * 120.00304 * 179.97438 * 6 5 4 9 9 C 1.45201 * 117.00306 * 185.07572 * 8 6 5 10 10 C 1.50702 * 109.46777 * 184.91956 * 9 8 6 11 11 O 1.21275 * 120.00161 * 4.98495 * 10 9 8 12 12 N 1.34775 * 119.99249 * 184.98363 * 10 9 8 13 13 C 1.37134 * 120.00534 * 3.75866 * 12 10 9 14 14 H 1.07997 * 120.00293 * 308.19598 * 13 12 10 15 15 C 1.38887 * 120.00040 * 128.19777 * 13 12 10 16 16 N 1.31422 * 120.00305 * 173.09405 * 15 13 12 17 17 Si 1.86803 * 120.00094 * 353.09296 * 15 13 12 18 18 H 1.48505 * 109.46976 * 95.34256 * 17 15 13 19 19 H 1.48500 * 109.47373 * 215.34334 * 17 15 13 20 20 H 1.48502 * 109.46918 * 335.34616 * 17 15 13 21 21 C 1.39794 * 119.99374 * 183.76322 * 12 10 9 22 22 C 1.38958 * 120.07628 * 171.70058 * 21 12 10 23 23 C 1.38086 * 119.92171 * 180.23086 * 22 21 12 24 24 C 1.38310 * 120.07556 * 359.46355 * 23 22 21 25 25 C 1.38304 * 120.15499 * 0.55601 * 24 23 22 26 26 C 1.38081 * 120.07684 * 359.70095 * 25 24 23 27 27 H 1.09004 * 109.46888 * 299.99974 * 1 2 3 28 28 H 1.09002 * 109.47554 * 59.99469 * 1 2 3 29 29 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46888 * 240.00026 * 2 1 3 31 31 H 1.08996 * 109.47423 * 119.99829 * 2 1 3 32 32 H 1.08996 * 109.47037 * 60.00097 * 3 2 1 33 33 H 1.09005 * 109.46932 * 300.00379 * 3 2 1 34 34 H 1.08001 * 119.99896 * 304.99627 * 4 3 2 35 35 H 1.08001 * 120.00376 * 359.97438 * 5 4 3 36 36 H 1.09004 * 109.47059 * 64.92184 * 9 8 6 37 37 H 1.08995 * 109.46773 * 304.91853 * 9 8 6 38 38 H 0.97006 * 120.00254 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.04134 * 359.94556 * 22 21 12 40 40 H 1.08002 * 119.96249 * 179.74369 * 23 22 21 41 41 H 1.08005 * 119.92057 * 180.25643 * 24 23 22 42 42 H 1.08001 * 119.96119 * 179.72827 * 25 24 23 43 43 H 1.08004 * 120.03487 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2119 2.1038 -0.9449 6 6 5.6815 2.1042 -0.9451 7 8 6.2895 1.5002 -0.0833 8 8 6.3552 2.7735 -1.9018 9 6 7.8008 2.6380 -1.9075 10 6 8.3860 3.5438 -2.9603 11 8 7.6668 4.3012 -3.5765 12 7 9.7087 3.5119 -3.2169 13 6 10.5100 2.6022 -2.5757 14 1 10.4818 2.5222 -1.4991 15 6 11.3578 1.7839 -3.3109 16 7 12.2220 1.0096 -2.6938 17 14 11.2697 1.7838 -5.1768 18 1 12.2892 2.7168 -5.7205 19 1 11.5321 0.4132 -5.6847 20 1 9.9179 2.2214 -5.6085 21 6 10.2639 4.4064 -4.1366 22 6 11.6436 4.4943 -4.2768 23 6 12.1888 5.3823 -5.1829 24 6 11.3629 6.1758 -5.9584 25 6 9.9893 6.0912 -5.8212 26 6 9.4375 5.2092 -4.9134 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 4.0873 0.9060 0.7653 35 1 3.6716 2.6401 -1.7109 36 1 8.0680 1.6045 -2.1280 37 1 8.1955 2.9148 -0.9299 38 1 12.8139 0.4378 -3.2073 39 1 12.2890 3.8721 -3.6744 40 1 13.2611 5.4541 -5.2893 41 1 11.7919 6.8665 -6.6692 42 1 9.3475 6.7154 -6.4253 43 1 8.3647 5.1433 -4.8071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061385480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:21 Heat of formation + Delta-G solvation = -77.323608 kcal Electronic energy + Delta-G solvation = -25645.644292 eV Core-core repulsion = 21849.538474 eV Total energy + Delta-G solvation = -3796.105818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.05916 -41.31383 -39.27437 -37.78481 -37.04594 -36.83788 -34.27529 -33.43992 -31.77388 -31.59431 -29.49504 -28.02422 -27.19764 -24.33179 -23.49606 -22.99714 -22.08700 -21.42400 -20.56702 -20.03630 -19.09760 -17.99800 -17.93569 -17.70858 -17.48473 -17.03614 -16.29985 -16.03366 -15.79772 -15.45180 -15.07418 -14.95335 -14.76262 -14.54593 -14.51354 -14.22727 -14.12358 -13.80096 -13.71932 -13.36299 -13.19966 -12.71386 -12.68782 -12.52143 -12.36282 -12.14116 -12.08895 -11.93560 -11.91635 -11.72640 -11.50110 -11.40304 -10.90595 -10.50097 -10.25648 -9.68507 -8.94349 -8.61958 -6.59008 0.05140 0.34636 0.52517 1.19600 1.25556 1.29405 1.36649 1.60224 1.88027 2.08721 2.49679 2.67062 3.05768 3.57395 3.58372 3.96230 3.98687 4.08411 4.14882 4.17563 4.18873 4.22802 4.24432 4.44992 4.62583 4.65100 4.68658 4.74702 4.80585 4.89377 4.98477 5.12133 5.19730 5.20383 5.26144 5.41474 5.43359 5.43761 5.49017 5.53446 5.63217 5.70050 5.88862 5.94064 6.32921 6.58851 6.72040 7.05889 7.34971 8.41961 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.002879 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.513508 B = 9722.275172 C =10574.064006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.096 4.096 4 C -0.027 4.027 5 C -0.211 4.211 6 C 0.487 3.513 7 O -0.545 6.545 8 O -0.344 6.344 9 C 0.079 3.921 10 C 0.493 3.507 11 O -0.553 6.553 12 N -0.412 5.412 13 C -0.375 4.375 14 H 0.092 0.908 15 C 0.061 3.939 16 N -0.882 5.882 17 Si 0.914 3.086 18 H -0.234 1.234 19 H -0.283 1.283 20 H -0.280 1.280 21 C 0.123 3.877 22 C -0.172 4.172 23 C -0.106 4.106 24 C -0.152 4.152 25 C -0.104 4.104 26 C -0.202 4.202 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.160 0.840 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.287 0.713 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.303 2.333 0.097 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.133 4.133 4 C -0.045 4.045 5 C -0.230 4.230 6 C 0.336 3.664 7 O -0.437 6.437 8 O -0.259 6.259 9 C 0.002 3.998 10 C 0.284 3.716 11 O -0.436 6.436 12 N -0.124 5.124 13 C -0.501 4.501 14 H 0.109 0.891 15 C -0.147 4.147 16 N -0.516 5.516 17 Si 0.738 3.262 18 H -0.157 1.157 19 H -0.210 1.210 20 H -0.205 1.205 21 C 0.028 3.972 22 C -0.192 4.192 23 C -0.125 4.125 24 C -0.171 4.171 25 C -0.123 4.123 26 C -0.222 4.222 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.177 0.823 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.308 2.343 0.107 15.487 hybrid contribution 0.871 -0.592 -0.264 1.086 sum -14.437 1.751 -0.157 14.544 Atomic orbital electron populations 1.21767 0.94397 1.02229 1.02477 1.21502 0.96881 0.95194 1.02569 1.21008 0.88340 0.98824 1.05138 1.24158 0.98032 0.89133 0.93192 1.22014 0.86761 1.08805 1.05377 1.22464 0.91385 0.74726 0.77851 1.90839 1.71452 1.43164 1.38282 1.86575 1.20830 1.66193 1.52323 1.22343 0.77104 1.01003 0.99312 1.20546 0.81947 0.84168 0.84918 1.90240 1.60137 1.41803 1.51428 1.41286 1.05530 1.29120 1.36418 1.18918 1.23108 1.15090 0.93011 0.89084 1.25825 0.93835 0.93087 1.01937 1.69704 1.19271 1.24146 1.38493 0.86320 0.80355 0.77988 0.81494 1.15701 1.20967 1.20534 1.18719 0.93453 0.92151 0.92879 1.21094 0.93275 1.02547 1.02312 1.21262 1.00992 0.95045 0.95194 1.21446 0.93325 1.01050 1.01235 1.21442 0.95918 0.97680 0.97225 1.22780 1.03518 0.98180 0.97716 0.91882 0.92264 0.92349 0.92238 0.91400 0.87708 0.89304 0.86085 0.82274 0.87900 0.88174 0.90279 0.86208 0.83720 0.82624 0.83275 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.39 5.92 30.60 0.18 -1.21 16 3 C -0.10 -1.11 5.67 29.85 0.17 -0.94 16 4 C -0.03 -0.49 9.09 24.53 0.22 -0.27 16 5 C -0.21 -5.03 9.76 23.40 0.23 -4.80 16 6 C 0.49 16.84 7.90 70.10 0.55 17.39 16 7 O -0.54 -21.49 15.92 19.71 0.31 -21.17 16 8 O -0.34 -13.58 9.77 -50.77 -0.50 -14.08 16 9 C 0.08 3.40 4.87 71.24 0.35 3.75 16 10 C 0.49 23.68 7.65 87.66 0.67 24.35 16 11 O -0.55 -27.26 12.92 15.74 0.20 -27.05 16 12 N -0.41 -20.66 2.26 -458.91 -1.04 -21.70 16 13 C -0.37 -19.79 7.96 84.02 0.67 -19.13 16 14 H 0.09 5.07 7.90 -2.91 -0.02 5.05 16 15 C 0.06 3.23 4.29 84.91 0.36 3.60 16 16 N -0.88 -47.98 13.96 21.65 0.30 -47.68 16 17 Si 0.91 43.10 24.15 68.60 1.66 44.75 16 18 H -0.23 -10.24 6.06 99.48 0.60 -9.64 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.28 -14.14 6.90 99.48 0.69 -13.46 16 21 C 0.12 5.82 4.40 38.22 0.17 5.99 16 22 C -0.17 -7.58 5.77 22.41 0.13 -7.45 16 23 C -0.11 -3.78 9.79 22.25 0.22 -3.56 16 24 C -0.15 -4.73 10.04 22.30 0.22 -4.51 16 25 C -0.10 -3.58 10.04 22.25 0.22 -3.36 16 26 C -0.20 -8.79 9.03 22.40 0.20 -8.59 16 27 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.88 7.82 -2.38 -0.02 0.86 16 34 H 0.12 2.48 7.49 -2.91 -0.02 2.46 16 35 H 0.16 3.09 7.87 -2.91 -0.02 3.07 16 36 H 0.10 4.49 7.90 -2.39 -0.02 4.47 16 37 H 0.10 4.22 7.95 -2.39 -0.02 4.20 16 38 H 0.29 14.48 8.31 -92.70 -0.77 13.71 16 39 H 0.12 5.73 5.69 -2.91 -0.02 5.71 16 40 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.17 7.57 4.58 -58.74 -0.27 7.30 16 Total: -1.00 -66.31 359.70 6.86 -59.45 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.63 Total: 26.86 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.29 Total: 0.62 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -0.74 Total: -69.38 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: 0.02 Total: -62.30 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.66 Total: 44.75 kcal Total: -66.31 6.86 -59.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061385480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.869 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds