Wall clock time and date at job start Tue Mar 31 2020 11:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46780 * 2 1 4 4 C 1.36497 * 119.78389 * 99.99776 * 3 2 1 5 5 C 1.39929 * 119.79119 * 179.97438 * 4 3 2 6 6 C 1.46449 * 120.99860 * 179.97438 * 5 4 3 7 7 C 1.50699 * 120.90249 * 0.02589 * 6 5 4 8 8 N 1.46502 * 109.47051 * 84.51406 * 7 6 5 9 9 C 1.36940 * 119.99340 * 267.68590 * 8 7 6 10 10 H 1.07995 * 120.00127 * 42.29549 * 9 8 7 11 11 C 1.38810 * 119.99664 * 222.28662 * 9 8 7 12 12 N 1.31614 * 120.00419 * 17.50999 * 11 9 8 13 13 Si 1.86799 * 119.99698 * 197.51025 * 11 9 8 14 14 H 1.48497 * 109.47425 * 60.00188 * 13 11 9 15 15 H 1.48507 * 109.47042 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47187 * 300.00036 * 13 11 9 17 17 C 1.46493 * 120.00183 * 87.69002 * 8 7 6 18 18 C 1.52997 * 109.47157 * 264.02382 * 17 8 7 19 19 C 1.35840 * 118.18917 * 180.29420 * 6 5 4 20 20 C 1.41008 * 119.83464 * 359.46835 * 19 6 5 21 21 O 1.21799 * 119.15529 * 180.27838 * 20 19 6 22 22 O 1.34223 * 121.68777 * 0.55169 * 20 19 6 23 23 C 1.35024 * 121.46186 * 359.72593 * 22 20 19 24 24 C 1.38636 * 120.72946 * 179.97438 * 23 22 20 25 25 C 1.38554 * 119.78680 * 180.02562 * 24 23 22 26 26 O 1.35750 * 119.73189 * 180.02562 * 25 24 23 27 27 H 1.08991 * 109.47244 * 60.00855 * 1 2 3 28 28 H 1.09009 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47182 * 300.00127 * 1 2 3 30 30 H 1.08998 * 109.47182 * 239.99873 * 2 1 3 31 31 H 1.09000 * 109.46999 * 119.99170 * 2 1 3 32 32 H 1.07997 * 120.10261 * 359.97438 * 4 3 2 33 33 H 1.08995 * 109.47231 * 324.50872 * 7 6 5 34 34 H 1.08999 * 109.46356 * 204.50906 * 7 6 5 35 35 H 0.96998 * 120.00296 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47106 * 24.02377 * 17 8 7 37 37 H 1.09006 * 109.47360 * 144.02599 * 17 8 7 38 38 H 1.09003 * 109.47338 * 180.02562 * 18 17 8 39 39 H 1.09000 * 109.47108 * 299.99993 * 18 17 8 40 40 H 1.08998 * 109.47307 * 60.00270 * 18 17 8 41 41 H 1.08004 * 120.08479 * 179.72943 * 19 6 5 42 42 H 1.08006 * 120.10643 * 0.05130 * 24 23 22 43 43 H 0.96702 * 114.00207 * 269.98049 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4522 1.9916 1.1667 5 6 2.9190 3.3107 1.1668 6 6 3.3753 3.9492 2.4032 7 6 3.3558 3.2031 3.7124 8 7 4.5772 2.4038 3.8373 9 6 4.5904 1.1027 3.4106 10 1 4.1159 0.8353 2.4780 11 6 5.2139 0.1274 4.1767 12 7 5.4848 0.3591 5.4436 13 14 5.6683 -1.5140 3.4095 14 1 6.6070 -1.2900 2.2809 15 1 6.3177 -2.3749 4.4306 16 1 4.4410 -2.1825 2.9073 17 6 5.7842 2.9965 4.4186 18 6 6.6933 3.5048 3.2979 19 6 3.8115 5.2341 2.3388 20 6 3.8253 5.9089 1.1008 21 8 4.2237 7.0591 1.0564 22 8 3.4058 5.3181 -0.0290 23 6 2.9550 4.0454 -0.0333 24 6 2.5247 3.4502 -1.2092 25 6 2.0655 2.1431 -1.1910 26 8 1.6449 1.5612 -2.3431 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 2.4241 1.4268 2.0868 33 1 2.4867 2.5460 3.7432 34 1 3.3020 3.9155 4.5356 35 1 5.9208 -0.3223 5.9789 36 1 5.5052 3.8281 5.0656 37 1 6.3137 2.2435 5.0026 38 1 7.5916 3.9454 3.7304 39 1 6.9723 2.6732 2.6509 40 1 6.1640 4.2577 2.7140 41 1 4.1507 5.7361 3.2328 42 1 2.5478 4.0034 -2.1364 43 1 0.7028 1.6826 -2.5240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068959200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:23 Heat of formation + Delta-G solvation = -62.209855 kcal Electronic energy + Delta-G solvation = -27532.176992 eV Core-core repulsion = 23736.726556 eV Total energy + Delta-G solvation = -3795.450436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.66011 -39.66067 -37.60841 -37.08219 -35.92515 -34.20138 -33.36228 -31.48443 -30.06121 -29.62743 -28.58534 -26.57940 -24.54384 -23.98504 -23.32088 -22.12272 -21.54041 -20.41425 -19.60815 -17.64611 -17.44771 -17.05576 -16.68081 -16.43467 -15.44806 -15.23935 -15.10561 -14.73635 -14.13446 -14.04173 -13.74559 -13.62496 -13.44956 -13.22220 -13.16354 -12.86808 -12.38155 -12.31350 -12.00278 -11.85976 -11.64626 -11.50747 -11.25391 -11.04794 -10.94963 -10.85077 -10.74577 -10.61350 -10.26194 -10.14959 -10.06566 -9.75893 -9.53392 -8.70103 -8.56373 -8.01928 -6.74984 -5.95213 -3.66246 0.44371 1.15291 1.74001 2.59719 3.00947 3.23649 3.31479 3.34362 3.78880 4.08233 4.32135 4.43384 4.63909 4.66810 4.74791 5.06840 5.18829 5.20589 5.31326 5.37201 5.38121 5.53077 5.68069 5.76543 5.82115 5.90115 5.96641 6.01115 6.12164 6.20855 6.23346 6.33193 6.38276 6.49412 6.52087 6.60549 6.63040 6.68268 6.80356 7.17204 7.42382 7.46585 7.57783 7.66385 7.75085 8.34544 8.98000 9.56416 10.16381 11.02351 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.006857 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.113438 B = 4082.527574 C = 6341.534397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.134 4.134 4 C -0.021 4.021 5 C -0.140 4.140 6 C 0.046 3.954 7 C 0.165 3.835 8 N -0.566 5.566 9 C -0.279 4.279 10 H 0.064 0.936 11 C 0.026 3.974 12 N -0.880 5.880 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.140 3.860 18 C -0.166 4.166 19 C -0.276 4.276 20 C 0.514 3.486 21 O -0.485 6.485 22 O -0.278 6.278 23 C 0.151 3.849 24 C -0.171 4.171 25 C 0.157 3.843 26 O -0.489 6.489 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.258 0.742 36 H 0.027 0.973 37 H 0.092 0.908 38 H 0.034 0.966 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.039 1.055 -8.727 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.134 4.134 4 C -0.039 4.039 5 C -0.141 4.141 6 C 0.041 3.959 7 C 0.037 3.963 8 N -0.285 5.285 9 C -0.408 4.408 10 H 0.082 0.918 11 C -0.176 4.176 12 N -0.520 5.520 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.203 1.203 17 C 0.015 3.985 18 C -0.226 4.226 19 C -0.297 4.297 20 C 0.365 3.635 21 O -0.375 6.375 22 O -0.190 6.190 23 C 0.107 3.893 24 C -0.190 4.190 25 C 0.112 3.888 26 O -0.299 6.299 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.178 0.822 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.162 1.390 -8.770 12.758 hybrid contribution 0.147 -0.631 -0.416 0.770 sum -9.015 0.760 -9.186 12.893 Atomic orbital electron populations 1.21709 0.94992 1.01781 1.01620 1.20453 0.95813 0.91837 1.03833 1.19941 1.03458 0.97935 0.92104 1.21188 0.91316 0.92180 0.99185 1.19157 1.06622 0.96020 0.92274 1.23148 0.83672 0.91845 0.97239 1.20133 0.92813 0.94397 0.88910 1.43700 1.04883 1.08577 1.71379 1.19007 1.37167 0.82926 1.01707 0.91827 1.25304 1.00338 0.97628 0.94331 1.69933 1.42493 1.34419 1.05181 0.86511 0.78921 0.83459 0.78740 1.20622 1.21412 1.20320 1.20989 0.87796 0.96470 0.93291 1.22323 0.99038 1.00142 1.01077 1.22206 1.12683 0.96876 0.97940 1.19312 0.75803 0.86265 0.82119 1.90926 1.45013 1.16429 1.85167 1.83475 1.69065 1.26157 1.40313 1.18782 0.95375 0.81330 0.93855 1.20522 1.06633 0.94912 0.96939 1.18014 0.96595 0.89150 0.85018 1.84758 1.30282 1.76429 1.38480 0.93272 0.92264 0.92403 0.90416 0.90146 0.82171 0.90963 0.92201 0.93168 0.95469 0.89049 0.94648 0.93208 0.94504 0.82631 0.83943 0.75234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 37.16 0.37 -0.94 16 2 C -0.08 -0.96 5.70 -27.88 -0.16 -1.11 16 3 C -0.13 -1.80 5.11 -104.84 -0.54 -2.34 16 4 C -0.02 -0.32 7.70 -39.58 -0.30 -0.63 16 5 C -0.14 -2.32 5.87 -105.01 -0.62 -2.93 16 6 C 0.05 0.79 5.51 -102.18 -0.56 0.23 16 7 C 0.16 3.00 5.41 -5.19 -0.03 2.97 16 8 N -0.57 -12.42 2.38 -174.62 -0.42 -12.83 16 9 C -0.28 -6.65 8.84 -15.06 -0.13 -6.78 16 10 H 0.06 1.47 5.27 -52.49 -0.28 1.19 16 11 C 0.03 0.66 5.07 -17.43 -0.09 0.57 16 12 N -0.88 -23.26 11.49 55.49 0.64 -22.63 16 13 Si 0.90 19.95 29.59 -169.99 -5.03 14.92 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 C 0.14 3.05 6.11 -4.05 -0.02 3.03 16 18 C -0.17 -3.38 10.20 37.16 0.38 -3.00 16 19 C -0.28 -4.76 8.24 -39.39 -0.32 -5.09 16 20 C 0.51 9.59 7.89 31.78 0.25 9.84 16 21 O -0.49 -10.14 17.91 -19.60 -0.35 -10.49 16 22 O -0.28 -4.94 9.82 -20.80 -0.20 -5.14 16 23 C 0.15 2.45 6.76 -38.48 -0.26 2.19 16 24 C -0.17 -2.35 9.94 -39.32 -0.39 -2.74 16 25 C 0.16 2.00 6.67 -39.06 -0.26 1.74 16 26 O -0.49 -5.04 12.59 -18.96 -0.24 -5.28 16 27 H 0.05 0.37 7.59 -51.93 -0.39 -0.03 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.89 7.83 -51.93 -0.41 0.49 16 31 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 32 H 0.16 2.61 4.90 -52.49 -0.26 2.35 16 33 H 0.07 1.27 6.79 -51.93 -0.35 0.91 16 34 H 0.06 1.02 7.81 -51.93 -0.41 0.62 16 35 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 37 H 0.09 2.27 5.68 -51.93 -0.29 1.98 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.04 0.73 6.55 -51.93 -0.34 0.39 16 41 H 0.16 2.52 8.06 -52.48 -0.42 2.10 16 42 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.39 2.12 8.60 45.56 0.39 2.51 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -29.10 353.85 -7.79 -36.89 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.83 Total: 4.22 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.69 Total: -4.99 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.22 Total: -35.46 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.79 Total: -20.92 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.10 -7.79 -36.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.317 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds