Wall clock time and date at job start Tue Mar 31 2020 11:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46780 * 2 1 4 4 C 1.36497 * 119.78389 * 99.99776 * 3 2 1 5 5 C 1.39929 * 119.79119 * 179.97438 * 4 3 2 6 6 C 1.46449 * 120.99860 * 179.97438 * 5 4 3 7 7 C 1.50699 * 120.90249 * 0.02589 * 6 5 4 8 8 N 1.46502 * 109.47051 * 84.51406 * 7 6 5 9 9 C 1.36940 * 119.99340 * 267.68590 * 8 7 6 10 10 H 1.07995 * 120.00127 * 42.29549 * 9 8 7 11 11 C 1.38810 * 119.99664 * 222.28662 * 9 8 7 12 12 N 1.31614 * 120.00419 * 17.50999 * 11 9 8 13 13 Si 1.86799 * 119.99698 * 197.51025 * 11 9 8 14 14 H 1.48497 * 109.47425 * 60.00188 * 13 11 9 15 15 H 1.48507 * 109.47042 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47187 * 300.00036 * 13 11 9 17 17 C 1.46493 * 120.00183 * 87.69002 * 8 7 6 18 18 C 1.52997 * 109.47157 * 264.02382 * 17 8 7 19 19 C 1.35840 * 118.18917 * 180.29420 * 6 5 4 20 20 C 1.41008 * 119.83464 * 359.46835 * 19 6 5 21 21 O 1.21799 * 119.15529 * 180.27838 * 20 19 6 22 22 O 1.34223 * 121.68777 * 0.55169 * 20 19 6 23 23 C 1.35024 * 121.46186 * 359.72593 * 22 20 19 24 24 C 1.38636 * 120.72946 * 179.97438 * 23 22 20 25 25 C 1.38554 * 119.78680 * 180.02562 * 24 23 22 26 26 O 1.35750 * 119.73189 * 180.02562 * 25 24 23 27 27 H 1.08991 * 109.47244 * 60.00855 * 1 2 3 28 28 H 1.09009 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47182 * 300.00127 * 1 2 3 30 30 H 1.08998 * 109.47182 * 239.99873 * 2 1 3 31 31 H 1.09000 * 109.46999 * 119.99170 * 2 1 3 32 32 H 1.07997 * 120.10261 * 359.97438 * 4 3 2 33 33 H 1.08995 * 109.47231 * 324.50872 * 7 6 5 34 34 H 1.08999 * 109.46356 * 204.50906 * 7 6 5 35 35 H 0.96998 * 120.00296 * 180.02562 * 12 11 9 36 36 H 1.09000 * 109.47106 * 24.02377 * 17 8 7 37 37 H 1.09006 * 109.47360 * 144.02599 * 17 8 7 38 38 H 1.09003 * 109.47338 * 180.02562 * 18 17 8 39 39 H 1.09000 * 109.47108 * 299.99993 * 18 17 8 40 40 H 1.08998 * 109.47307 * 60.00270 * 18 17 8 41 41 H 1.08004 * 120.08479 * 179.72943 * 19 6 5 42 42 H 1.08006 * 120.10643 * 0.05130 * 24 23 22 43 43 H 0.96702 * 114.00207 * 269.98049 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4522 1.9916 1.1667 5 6 2.9190 3.3107 1.1668 6 6 3.3753 3.9492 2.4032 7 6 3.3558 3.2031 3.7124 8 7 4.5772 2.4038 3.8373 9 6 4.5904 1.1027 3.4106 10 1 4.1159 0.8353 2.4780 11 6 5.2139 0.1274 4.1767 12 7 5.4848 0.3591 5.4436 13 14 5.6683 -1.5140 3.4095 14 1 6.6070 -1.2900 2.2809 15 1 6.3177 -2.3749 4.4306 16 1 4.4410 -2.1825 2.9073 17 6 5.7842 2.9965 4.4186 18 6 6.6933 3.5048 3.2979 19 6 3.8115 5.2341 2.3388 20 6 3.8253 5.9089 1.1008 21 8 4.2237 7.0591 1.0564 22 8 3.4058 5.3181 -0.0290 23 6 2.9550 4.0454 -0.0333 24 6 2.5247 3.4502 -1.2092 25 6 2.0655 2.1431 -1.1910 26 8 1.6449 1.5612 -2.3431 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 2.4241 1.4268 2.0868 33 1 2.4867 2.5460 3.7432 34 1 3.3020 3.9155 4.5356 35 1 5.9208 -0.3223 5.9789 36 1 5.5052 3.8281 5.0656 37 1 6.3137 2.2435 5.0026 38 1 7.5916 3.9454 3.7304 39 1 6.9723 2.6732 2.6509 40 1 6.1640 4.2577 2.7140 41 1 4.1507 5.7361 3.2328 42 1 2.5478 4.0034 -2.1364 43 1 0.7028 1.6826 -2.5240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068959200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:22 Heat of formation + Delta-G solvation = -77.341899 kcal Electronic energy + Delta-G solvation = -27532.833167 eV Core-core repulsion = 23736.726556 eV Total energy + Delta-G solvation = -3796.106611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.97826 -40.78495 -38.93253 -38.57466 -37.16411 -35.55569 -34.47344 -33.27707 -31.48105 -30.96421 -29.69463 -28.22685 -25.71126 -25.64324 -24.50593 -23.31225 -22.87486 -22.01843 -20.76997 -18.99441 -18.65684 -18.39503 -18.16192 -17.83526 -16.91828 -16.67245 -16.21411 -15.99750 -15.71011 -15.47279 -15.10323 -14.96403 -14.65918 -14.38698 -14.35058 -14.06278 -14.00396 -13.60994 -13.45785 -13.21400 -13.07795 -12.78271 -12.61640 -12.55867 -12.41400 -12.33743 -12.04397 -11.83955 -11.74570 -11.61852 -11.53590 -11.28999 -10.98094 -10.53467 -9.75571 -9.24733 -8.56387 -7.80891 -5.54264 -0.80818 -0.04552 0.48725 1.29158 1.45975 1.51483 1.54743 1.72833 2.47005 2.59815 3.03155 3.22478 3.25910 3.38089 3.46194 3.70713 3.73001 3.95056 4.14556 4.32563 4.41084 4.43912 4.52119 4.53531 4.70226 4.71092 4.80288 4.82106 4.87476 4.93281 5.01986 5.05834 5.10968 5.12546 5.18230 5.28113 5.37816 5.45282 5.48099 5.56146 5.71284 5.84435 6.08355 6.34873 6.49405 6.74491 7.15762 7.77555 8.34647 9.13393 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.006857 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.113438 B = 4082.527574 C = 6341.534397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.030 4.030 5 C -0.158 4.158 6 C 0.054 3.946 7 C 0.167 3.833 8 N -0.580 5.580 9 C -0.270 4.270 10 H 0.071 0.929 11 C -0.021 4.021 12 N -0.912 5.912 13 Si 0.943 3.057 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.263 1.263 17 C 0.140 3.860 18 C -0.153 4.153 19 C -0.279 4.279 20 C 0.513 3.487 21 O -0.517 6.517 22 O -0.282 6.282 23 C 0.135 3.865 24 C -0.168 4.168 25 C 0.179 3.821 26 O -0.487 6.487 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.028 0.972 40 H 0.039 0.961 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 0.420 -10.792 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.131 4.131 4 C -0.048 4.048 5 C -0.159 4.159 6 C 0.049 3.951 7 C 0.040 3.960 8 N -0.300 5.300 9 C -0.400 4.400 10 H 0.088 0.912 11 C -0.220 4.220 12 N -0.554 5.554 13 Si 0.771 3.229 14 H -0.214 1.214 15 H -0.223 1.223 16 H -0.188 1.188 17 C 0.014 3.986 18 C -0.212 4.212 19 C -0.299 4.299 20 C 0.367 3.633 21 O -0.410 6.410 22 O -0.194 6.194 23 C 0.091 3.909 24 C -0.187 4.187 25 C 0.133 3.867 26 O -0.301 6.301 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -10.722 0.747 -10.869 15.286 hybrid contribution 0.497 -0.486 0.085 0.700 sum -10.226 0.261 -10.784 14.864 Atomic orbital electron populations 1.21700 0.92830 1.02835 1.02405 1.20502 0.97660 0.90337 1.03430 1.20184 1.02336 0.98812 0.91771 1.21083 0.92306 0.91801 0.99601 1.19205 1.07854 0.96667 0.92197 1.22970 0.83367 0.91697 0.97030 1.20171 0.91512 0.94410 0.89868 1.43812 1.06080 1.08537 1.71567 1.19291 1.35537 0.83640 1.01499 0.91178 1.25874 1.01307 1.00118 0.94652 1.70054 1.44165 1.34969 1.06220 0.85744 0.78807 0.80918 0.77460 1.21375 1.22310 1.18799 1.20890 0.88018 0.95964 0.93684 1.22173 0.99550 0.99320 1.00196 1.22193 1.13035 0.96940 0.97759 1.19414 0.75371 0.85966 0.82587 1.90902 1.46734 1.17621 1.85719 1.83431 1.69009 1.27068 1.39908 1.19043 0.96410 0.80768 0.94688 1.20780 1.05745 0.95363 0.96815 1.17923 0.95037 0.88366 0.85345 1.84708 1.32628 1.75859 1.36939 0.91220 0.91137 0.92933 0.89828 0.91539 0.83402 0.90402 0.90951 0.93899 0.94134 0.92036 0.92778 0.95315 0.94146 0.81872 0.81963 0.72122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 71.98 0.71 -1.39 16 2 C -0.08 -1.69 5.70 29.85 0.17 -1.52 16 3 C -0.13 -3.20 5.11 -20.01 -0.10 -3.31 16 4 C -0.03 -0.89 7.70 22.27 0.17 -0.72 16 5 C -0.16 -5.09 5.87 -20.11 -0.12 -5.21 16 6 C 0.05 1.82 5.51 -18.28 -0.10 1.72 16 7 C 0.17 5.98 5.41 85.63 0.46 6.44 16 8 N -0.58 -25.35 2.38 -706.37 -1.68 -27.04 16 9 C -0.27 -12.83 8.84 84.03 0.74 -12.09 16 10 H 0.07 3.20 5.27 -2.91 -0.02 3.19 16 11 C -0.02 -1.05 5.07 84.86 0.43 -0.62 16 12 N -0.91 -49.10 11.49 21.65 0.25 -48.85 16 13 Si 0.94 41.09 29.59 68.60 2.03 43.12 16 14 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.30 -13.24 7.11 99.48 0.71 -12.54 16 16 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 17 C 0.14 6.12 6.11 86.38 0.53 6.65 16 18 C -0.15 -6.16 10.20 71.98 0.73 -5.43 16 19 C -0.28 -9.48 8.24 22.39 0.18 -9.29 16 20 C 0.51 19.05 7.89 68.50 0.54 19.59 16 21 O -0.52 -21.68 17.91 18.95 0.34 -21.34 16 22 O -0.28 -9.81 9.82 14.67 0.14 -9.67 16 23 C 0.14 4.18 6.76 22.98 0.16 4.34 16 24 C -0.17 -4.16 9.94 22.44 0.22 -3.93 16 25 C 0.18 3.95 6.67 22.61 0.15 4.10 16 26 O -0.49 -7.88 12.59 -90.75 -1.14 -9.02 16 27 H 0.07 0.74 7.59 -2.39 -0.02 0.73 16 28 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.65 7.83 -2.39 -0.02 1.63 16 31 H 0.07 1.57 7.97 -2.39 -0.02 1.55 16 32 H 0.15 4.74 4.90 -2.91 -0.01 4.73 16 33 H 0.08 2.69 6.79 -2.39 -0.02 2.67 16 34 H 0.07 2.40 7.81 -2.39 -0.02 2.39 16 35 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 36 H 0.04 1.63 7.85 -2.39 -0.02 1.61 16 37 H 0.06 3.12 5.68 -2.38 -0.01 3.11 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.57 6.55 -2.39 -0.02 1.55 16 41 H 0.16 5.20 8.06 -2.91 -0.02 5.17 16 42 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 43 H 0.42 2.37 8.60 -74.06 -0.64 1.74 16 Total: -1.00 -62.50 353.85 5.24 -57.26 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.42 Total: 16.22 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 4.88 Total: -0.68 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -1.44 Total: -75.89 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.66 Total: -40.03 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -62.50 5.24 -57.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.084 kcal (2) G-P(sol) polarization free energy of solvation -62.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds