Wall clock time and date at job start Tue Mar 31 2020 11:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47042 * 2 1 4 4 C 1.36497 * 119.78323 * 100.00029 * 3 2 1 5 5 C 1.39926 * 119.79647 * 179.97438 * 4 3 2 6 6 C 1.46439 * 121.00256 * 179.97438 * 5 4 3 7 7 C 1.50695 * 120.90716 * 0.03463 * 6 5 4 8 8 N 1.46897 * 109.47441 * 74.86961 * 7 6 5 9 9 C 1.46901 * 111.00319 * 199.60815 * 8 7 6 10 10 C 1.46904 * 110.99468 * 75.65864 * 8 7 6 11 11 C 1.50703 * 109.47058 * 190.00139 * 10 8 7 12 12 H 1.07997 * 119.99779 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00215 * 180.02562 * 11 10 8 14 14 N 1.31520 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00288 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46973 * 59.99426 * 15 13 11 17 17 H 1.48497 * 109.47393 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46820 * 299.99750 * 15 13 11 19 19 C 1.35848 * 118.18953 * 180.29722 * 6 5 4 20 20 C 1.41000 * 119.83785 * 359.47590 * 19 6 5 21 21 O 1.21796 * 119.15958 * 180.28111 * 20 19 6 22 22 O 1.34225 * 121.68574 * 0.54168 * 20 19 6 23 23 C 1.35033 * 121.46117 * 359.73800 * 22 20 19 24 24 C 1.38641 * 120.72683 * 179.97438 * 23 22 20 25 25 C 1.38562 * 119.78177 * 180.02562 * 24 23 22 26 26 O 1.35750 * 119.72530 * 180.02562 * 25 24 23 27 27 H 1.09008 * 109.47026 * 59.99820 * 1 2 3 28 28 H 1.08993 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47141 * 300.00291 * 1 2 3 30 30 H 1.09000 * 109.47009 * 240.00172 * 2 1 3 31 31 H 1.08999 * 109.47340 * 119.99690 * 2 1 3 32 32 H 1.08003 * 120.10349 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47071 * 314.87138 * 7 6 5 34 34 H 1.08995 * 109.47278 * 194.87612 * 7 6 5 35 35 H 1.08996 * 109.47105 * 290.99600 * 9 8 7 36 36 H 1.09002 * 109.46392 * 50.99573 * 9 8 7 37 37 H 1.08994 * 109.46910 * 170.98899 * 9 8 7 38 38 H 1.08996 * 109.47454 * 310.00291 * 10 8 7 39 39 H 1.09001 * 109.47154 * 69.99898 * 10 8 7 40 40 H 0.96998 * 120.00066 * 180.02562 * 14 13 11 41 41 H 1.08004 * 120.08134 * 179.73016 * 19 6 5 42 42 H 1.07995 * 120.10878 * 0.04308 * 24 23 22 43 43 H 0.96695 * 113.99942 * 269.97847 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4523 1.9915 1.1667 5 6 2.9192 3.3106 1.1669 6 6 3.3756 3.9490 2.4033 7 6 3.3562 3.2029 3.7124 8 7 4.4573 2.2309 3.7385 9 6 4.2157 1.1883 4.7448 10 6 5.7443 2.8996 3.9719 11 6 6.8673 1.9195 3.7496 12 1 6.6470 0.9016 3.4639 13 6 8.1759 2.3221 3.9119 14 7 8.4443 3.5616 4.2603 15 14 9.5680 1.1074 3.6356 16 1 9.5174 0.6060 2.2387 17 1 10.8689 1.7833 3.8717 18 1 9.4240 -0.0326 4.5763 19 6 3.8117 5.2339 2.3389 20 6 3.8254 5.9089 1.1011 21 8 4.2238 7.0591 1.0567 22 8 3.4058 5.3182 -0.0288 23 6 2.9550 4.0454 -0.0331 24 6 2.5247 3.4503 -1.2091 25 6 2.0654 2.1431 -1.1909 26 8 1.6448 1.5614 -2.3431 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4242 1.4267 2.0868 33 1 2.4063 2.6787 3.8179 34 1 3.4749 3.9085 4.5346 35 1 4.2899 1.6218 5.7421 36 1 3.2187 0.7710 4.6033 37 1 4.9589 0.3987 4.6355 38 1 5.8499 3.7359 3.2809 39 1 5.7815 3.2684 4.9970 40 1 9.3650 3.8449 4.3741 41 1 4.1510 5.7358 3.2330 42 1 2.5477 4.0036 -2.1362 43 1 0.7027 1.6829 -2.5240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:27 Heat of formation + Delta-G solvation = -73.492706 kcal Electronic energy + Delta-G solvation = -26847.991856 eV Core-core repulsion = 23052.052159 eV Total energy + Delta-G solvation = -3795.939698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77265 -39.76971 -37.75590 -37.43463 -36.21466 -34.35313 -33.49954 -32.45632 -30.10307 -28.74956 -28.03810 -27.14368 -24.67458 -24.25159 -23.42505 -22.34956 -21.89720 -20.39019 -19.64208 -17.75789 -17.57268 -17.14231 -16.57805 -16.39798 -15.58432 -15.33335 -15.03897 -14.87307 -14.51390 -14.26464 -14.04291 -13.91867 -13.58883 -13.39085 -13.30289 -12.91627 -12.57407 -12.47617 -12.07556 -11.90478 -11.78992 -11.55207 -11.50671 -11.30085 -11.07959 -11.03240 -10.76736 -10.70353 -10.58642 -10.16377 -10.03701 -9.78729 -9.30138 -8.74707 -8.48413 -8.14160 -7.51172 -6.07088 -4.09398 0.29862 1.02683 1.58771 2.50393 2.89940 3.30607 3.35844 3.37769 3.64296 3.96041 4.28845 4.38125 4.41013 4.45748 4.58912 4.81655 4.98969 5.04844 5.16279 5.19636 5.29013 5.34380 5.36487 5.53302 5.66273 5.71625 5.74148 5.79334 5.80212 5.86798 5.91625 6.01674 6.16813 6.18955 6.25945 6.42907 6.43811 6.56170 7.10967 7.17349 7.33160 7.36840 7.66343 7.67656 7.91143 8.03650 8.39274 8.96571 9.55112 11.03717 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.004624 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.657197 B = 6054.437614 C = 7121.022154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.017 4.017 5 C -0.134 4.134 6 C 0.058 3.942 7 C 0.077 3.923 8 N -0.534 5.534 9 C 0.039 3.961 10 C 0.190 3.810 11 C -0.511 4.511 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.250 4.250 20 C 0.516 3.484 21 O -0.471 6.471 22 O -0.275 6.275 23 C 0.155 3.845 24 C -0.166 4.166 25 C 0.158 3.842 26 O -0.488 6.488 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.033 0.967 39 H -0.006 1.006 40 H 0.263 0.737 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.246 -5.470 -7.010 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.134 4.134 4 C -0.035 4.035 5 C -0.135 4.135 6 C 0.056 3.944 7 C -0.051 4.051 8 N -0.259 5.259 9 C -0.109 4.109 10 C 0.065 3.935 11 C -0.550 4.550 12 H 0.081 0.919 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.270 4.270 20 C 0.366 3.634 21 O -0.360 6.360 22 O -0.187 6.187 23 C 0.110 3.890 24 C -0.185 4.185 25 C 0.113 3.887 26 O -0.299 6.299 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.012 0.988 40 H 0.073 0.927 41 H 0.179 0.821 42 H 0.163 0.837 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -18.281 -5.086 -7.657 20.462 hybrid contribution 0.642 0.061 0.776 1.009 sum -17.639 -5.025 -6.881 19.589 Atomic orbital electron populations 1.21721 0.95004 1.01803 1.01695 1.20426 0.95739 0.91788 1.03708 1.19907 1.03516 0.97877 0.92124 1.20744 0.92358 0.92005 0.98412 1.18996 1.06480 0.96023 0.92008 1.21499 0.86657 0.91887 0.94325 1.21162 0.96995 0.95494 0.91453 1.62203 1.02599 1.12283 1.48807 1.22234 1.00106 0.95858 0.92681 1.19857 0.83623 0.94742 0.95294 1.21037 0.90038 0.97242 1.46666 0.91897 1.24977 0.98890 0.95317 0.95263 1.69939 1.19800 1.16246 1.47453 0.86569 0.81126 0.80983 0.78802 1.20158 1.21291 1.20241 1.22424 1.09217 0.96793 0.98588 1.19171 0.75969 0.86306 0.81969 1.90959 1.43797 1.16204 1.85017 1.83511 1.68954 1.26050 1.40181 1.18746 0.95104 0.81389 0.93746 1.20570 1.06017 0.94888 0.96997 1.17992 0.96569 0.89123 0.85036 1.84770 1.30330 1.76352 1.38405 0.93116 0.92234 0.92546 0.90248 0.90483 0.83575 0.89937 0.93019 0.96338 0.93593 0.90439 0.94901 0.98775 0.92738 0.82052 0.83672 0.75166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.89 37.16 0.37 -0.60 16 2 C -0.08 -0.70 5.70 -27.88 -0.16 -0.86 16 3 C -0.13 -1.50 5.11 -104.84 -0.54 -2.04 16 4 C -0.02 -0.22 9.00 -39.58 -0.36 -0.58 16 5 C -0.13 -2.02 5.87 -105.01 -0.62 -2.64 16 6 C 0.06 0.94 5.00 -102.18 -0.51 0.43 16 7 C 0.08 1.19 4.39 -4.98 -0.02 1.17 16 8 N -0.53 -10.21 4.65 -245.83 -1.14 -11.35 16 9 C 0.04 0.66 9.31 60.07 0.56 1.22 16 10 C 0.19 4.68 4.55 -4.97 -0.02 4.66 16 11 C -0.51 -13.92 8.58 -34.44 -0.30 -14.22 16 12 H 0.06 1.68 7.10 -52.49 -0.37 1.31 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 15 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 C -0.25 -4.36 8.95 -39.39 -0.35 -4.72 16 20 C 0.52 9.73 7.89 31.78 0.25 9.98 16 21 O -0.47 -10.11 17.91 -19.60 -0.35 -10.46 16 22 O -0.27 -4.79 9.82 -20.83 -0.20 -4.99 16 23 C 0.16 2.37 6.76 -38.48 -0.26 2.11 16 24 C -0.17 -2.10 9.94 -39.31 -0.39 -2.49 16 25 C 0.16 1.77 6.67 -39.06 -0.26 1.51 16 26 O -0.49 -4.38 12.59 -18.96 -0.24 -4.61 16 27 H 0.05 0.28 7.59 -51.92 -0.39 -0.11 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.72 7.83 -51.93 -0.41 0.32 16 31 H 0.08 0.67 7.97 -51.93 -0.41 0.26 16 32 H 0.15 1.74 6.83 -52.48 -0.36 1.38 16 33 H 0.08 1.00 7.07 -51.93 -0.37 0.63 16 34 H 0.05 0.80 7.83 -51.93 -0.41 0.39 16 35 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.05 0.59 7.85 -51.93 -0.41 0.18 16 37 H 0.08 1.41 7.01 -51.93 -0.36 1.04 16 38 H 0.03 0.89 6.91 -51.93 -0.36 0.53 16 39 H -0.01 -0.15 8.07 -51.93 -0.42 -0.56 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.16 2.74 8.01 -52.48 -0.42 2.32 16 42 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.39 1.57 8.60 45.56 0.39 1.97 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -33.19 361.60 -8.60 -41.79 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.12 Total: -1.03 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.70 Total: -5.55 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.41 Total: -37.12 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.79 Total: -20.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.19 -8.60 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.702 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds