Wall clock time and date at job start Tue Mar 31 2020 11:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47042 * 2 1 4 4 C 1.36497 * 119.78323 * 100.00029 * 3 2 1 5 5 C 1.39926 * 119.79647 * 179.97438 * 4 3 2 6 6 C 1.46439 * 121.00256 * 179.97438 * 5 4 3 7 7 C 1.50695 * 120.90716 * 0.03463 * 6 5 4 8 8 N 1.46897 * 109.47441 * 74.86961 * 7 6 5 9 9 C 1.46901 * 111.00319 * 199.60815 * 8 7 6 10 10 C 1.46904 * 110.99468 * 75.65864 * 8 7 6 11 11 C 1.50703 * 109.47058 * 190.00139 * 10 8 7 12 12 H 1.07997 * 119.99779 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00215 * 180.02562 * 11 10 8 14 14 N 1.31520 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00288 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46973 * 59.99426 * 15 13 11 17 17 H 1.48497 * 109.47393 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46820 * 299.99750 * 15 13 11 19 19 C 1.35848 * 118.18953 * 180.29722 * 6 5 4 20 20 C 1.41000 * 119.83785 * 359.47590 * 19 6 5 21 21 O 1.21796 * 119.15958 * 180.28111 * 20 19 6 22 22 O 1.34225 * 121.68574 * 0.54168 * 20 19 6 23 23 C 1.35033 * 121.46117 * 359.73800 * 22 20 19 24 24 C 1.38641 * 120.72683 * 179.97438 * 23 22 20 25 25 C 1.38562 * 119.78177 * 180.02562 * 24 23 22 26 26 O 1.35750 * 119.72530 * 180.02562 * 25 24 23 27 27 H 1.09008 * 109.47026 * 59.99820 * 1 2 3 28 28 H 1.08993 * 109.47140 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47141 * 300.00291 * 1 2 3 30 30 H 1.09000 * 109.47009 * 240.00172 * 2 1 3 31 31 H 1.08999 * 109.47340 * 119.99690 * 2 1 3 32 32 H 1.08003 * 120.10349 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47071 * 314.87138 * 7 6 5 34 34 H 1.08995 * 109.47278 * 194.87612 * 7 6 5 35 35 H 1.08996 * 109.47105 * 290.99600 * 9 8 7 36 36 H 1.09002 * 109.46392 * 50.99573 * 9 8 7 37 37 H 1.08994 * 109.46910 * 170.98899 * 9 8 7 38 38 H 1.08996 * 109.47454 * 310.00291 * 10 8 7 39 39 H 1.09001 * 109.47154 * 69.99898 * 10 8 7 40 40 H 0.96998 * 120.00066 * 180.02562 * 14 13 11 41 41 H 1.08004 * 120.08134 * 179.73016 * 19 6 5 42 42 H 1.07995 * 120.10878 * 0.04308 * 24 23 22 43 43 H 0.96695 * 113.99942 * 269.97847 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4523 1.9915 1.1667 5 6 2.9192 3.3106 1.1669 6 6 3.3756 3.9490 2.4033 7 6 3.3562 3.2029 3.7124 8 7 4.4573 2.2309 3.7385 9 6 4.2157 1.1883 4.7448 10 6 5.7443 2.8996 3.9719 11 6 6.8673 1.9195 3.7496 12 1 6.6470 0.9016 3.4639 13 6 8.1759 2.3221 3.9119 14 7 8.4443 3.5616 4.2603 15 14 9.5680 1.1074 3.6356 16 1 9.5174 0.6060 2.2387 17 1 10.8689 1.7833 3.8717 18 1 9.4240 -0.0326 4.5763 19 6 3.8117 5.2339 2.3389 20 6 3.8254 5.9089 1.1011 21 8 4.2238 7.0591 1.0567 22 8 3.4058 5.3182 -0.0288 23 6 2.9550 4.0454 -0.0331 24 6 2.5247 3.4503 -1.2091 25 6 2.0654 2.1431 -1.1909 26 8 1.6448 1.5614 -2.3431 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.4242 1.4267 2.0868 33 1 2.4063 2.6787 3.8179 34 1 3.4749 3.9085 4.5346 35 1 4.2899 1.6218 5.7421 36 1 3.2187 0.7710 4.6033 37 1 4.9589 0.3987 4.6355 38 1 5.8499 3.7359 3.2809 39 1 5.7815 3.2684 4.9970 40 1 9.3650 3.8449 4.3741 41 1 4.1510 5.7358 3.2330 42 1 2.5477 4.0036 -2.1362 43 1 0.7027 1.6829 -2.5240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:26 Heat of formation + Delta-G solvation = -95.419918 kcal Electronic energy + Delta-G solvation = -26848.942692 eV Core-core repulsion = 23052.052159 eV Total energy + Delta-G solvation = -3796.890533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.03861 -40.79429 -39.05484 -38.87721 -37.29527 -35.61091 -34.62218 -34.29146 -31.09211 -29.87687 -29.62187 -28.67547 -25.98446 -25.67372 -24.53833 -23.64288 -22.95049 -21.81935 -20.74659 -19.01023 -18.70036 -18.46564 -18.21042 -17.90134 -16.88185 -16.60868 -16.22692 -16.16333 -15.97504 -15.57815 -15.42388 -15.08632 -14.60947 -14.43448 -14.37982 -14.06111 -13.96749 -13.93763 -13.43936 -13.17499 -13.04767 -12.89387 -12.69152 -12.62458 -12.48879 -12.36300 -12.31436 -11.94416 -11.72920 -11.53836 -11.43883 -11.31790 -11.08852 -10.61285 -9.77858 -9.29371 -9.10747 -8.20970 -6.30483 -0.89032 -0.06366 0.43776 1.23412 1.39484 1.42609 1.49958 1.65736 2.38696 2.51919 2.97436 3.12606 3.13482 3.26873 3.29517 3.46069 3.73139 3.90211 4.07807 4.21770 4.29654 4.41526 4.48410 4.55923 4.58418 4.62770 4.71393 4.78604 4.81410 4.89472 4.99418 5.08931 5.12411 5.16839 5.20657 5.26732 5.33862 5.39762 5.49483 5.59703 5.63225 6.01605 6.03037 6.24834 6.28106 6.52617 6.75894 6.85829 7.39301 8.89847 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.004624 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.657197 B = 6054.437614 C = 7121.022154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.127 4.127 4 C -0.016 4.016 5 C -0.156 4.156 6 C 0.075 3.925 7 C 0.076 3.924 8 N -0.536 5.536 9 C 0.039 3.961 10 C 0.205 3.795 11 C -0.520 4.520 12 H 0.068 0.932 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.964 3.036 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.261 1.261 19 C -0.281 4.281 20 C 0.514 3.486 21 O -0.517 6.517 22 O -0.282 6.282 23 C 0.130 3.870 24 C -0.171 4.171 25 C 0.180 3.820 26 O -0.488 6.488 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.130 0.870 34 H 0.049 0.951 35 H 0.013 0.987 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.001 0.999 39 H -0.033 1.033 40 H 0.262 0.738 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.371 -9.181 -8.018 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.128 4.128 4 C -0.033 4.033 5 C -0.157 4.157 6 C 0.074 3.926 7 C -0.051 4.051 8 N -0.260 5.260 9 C -0.108 4.108 10 C 0.079 3.921 11 C -0.559 4.559 12 H 0.086 0.914 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.186 1.186 19 C -0.301 4.301 20 C 0.367 3.633 21 O -0.409 6.409 22 O -0.194 6.194 23 C 0.086 3.914 24 C -0.190 4.190 25 C 0.134 3.866 26 O -0.302 6.302 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.178 0.822 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.019 0.981 39 H -0.016 1.016 40 H 0.071 0.929 41 H 0.171 0.829 42 H 0.176 0.824 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -20.468 -8.846 -8.677 23.927 hybrid contribution 1.126 1.026 0.954 1.797 sum -19.342 -7.820 -7.723 22.247 Atomic orbital electron populations 1.21719 0.93092 1.02835 1.02364 1.20498 0.97294 0.89729 1.03979 1.20236 1.02067 0.99032 0.91445 1.20913 0.91839 0.90859 0.99729 1.19100 1.08109 0.97216 0.91246 1.21720 0.84383 0.91125 0.95401 1.21323 0.97630 0.95273 0.90862 1.62017 1.01297 1.12931 1.49756 1.22306 1.02419 0.94433 0.91657 1.19446 0.86391 0.93630 0.92633 1.21442 0.90954 0.97780 1.45673 0.91381 1.25894 1.01775 0.96972 0.95115 1.70089 1.20179 1.18334 1.49002 0.85515 0.77671 0.78945 0.78999 1.19687 1.21382 1.18591 1.22298 1.11928 0.97986 0.97900 1.19292 0.75413 0.85965 0.82598 1.90910 1.46359 1.17857 1.85781 1.83445 1.68929 1.27499 1.39498 1.19173 0.96422 0.80668 0.95133 1.20805 1.05852 0.95726 0.96592 1.17999 0.94732 0.88138 0.85726 1.84716 1.32678 1.75698 1.37127 0.91931 0.91071 0.92503 0.90180 0.90090 0.82195 0.85198 0.93228 0.96844 0.88574 0.92106 0.98094 1.01573 0.92913 0.82897 0.82384 0.72059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 71.98 0.71 -0.54 16 2 C -0.08 -1.04 5.70 29.85 0.17 -0.87 16 3 C -0.13 -2.41 5.11 -20.01 -0.10 -2.51 16 4 C -0.02 -0.36 9.00 22.27 0.20 -0.15 16 5 C -0.16 -4.56 5.87 -20.12 -0.12 -4.68 16 6 C 0.08 2.47 5.00 -18.28 -0.09 2.37 16 7 C 0.08 2.26 4.39 85.56 0.38 2.64 16 8 N -0.54 -19.92 4.65 -931.67 -4.34 -24.25 16 9 C 0.04 1.21 9.31 127.69 1.19 2.40 16 10 C 0.21 10.40 4.55 85.56 0.39 10.79 16 11 C -0.52 -28.57 8.58 25.60 0.22 -28.35 16 12 H 0.07 3.59 7.10 -2.91 -0.02 3.57 16 13 C 0.00 0.02 5.46 84.65 0.46 0.49 16 14 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 15 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 C -0.28 -10.51 8.95 22.39 0.20 -10.31 16 20 C 0.51 20.90 7.89 68.50 0.54 21.44 16 21 O -0.52 -24.04 17.91 18.96 0.34 -23.70 16 22 O -0.28 -10.29 9.82 14.56 0.14 -10.15 16 23 C 0.13 3.96 6.76 22.98 0.16 4.12 16 24 C -0.17 -4.04 9.94 22.44 0.22 -3.82 16 25 C 0.18 3.44 6.67 22.61 0.15 3.59 16 26 O -0.49 -6.71 12.59 -90.76 -1.14 -7.86 16 27 H 0.06 0.40 7.59 -2.38 -0.02 0.38 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 1.12 7.83 -2.39 -0.02 1.10 16 31 H 0.08 1.06 7.97 -2.39 -0.02 1.04 16 32 H 0.16 3.14 6.83 -2.91 -0.02 3.12 16 33 H 0.13 2.63 7.07 -2.38 -0.02 2.62 16 34 H 0.05 1.52 7.83 -2.39 -0.02 1.51 16 35 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 36 H 0.10 2.02 7.85 -2.39 -0.02 2.00 16 37 H 0.06 2.09 7.01 -2.39 -0.02 2.07 16 38 H 0.00 0.05 6.91 -2.39 -0.02 0.04 16 39 H -0.03 -1.85 8.07 -2.39 -0.02 -1.87 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 41 H 0.15 5.78 8.01 -2.91 -0.02 5.76 16 42 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 43 H 0.42 1.37 8.60 -74.06 -0.64 0.73 16 Total: -1.00 -75.62 361.60 2.40 -73.23 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.41 Total: 6.60 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.68 Total: -3.38 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -4.05 Total: -81.07 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.66 Total: -41.71 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -75.62 2.40 -73.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.191 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds