Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31300 * 118.85935 * 2 1 4 4 C 1.34087 * 120.87654 * 179.97438 * 3 2 1 5 5 S 1.75393 * 131.29910 * 179.97438 * 4 3 2 6 6 C 1.76323 * 92.45988 * 179.97438 * 5 4 3 7 7 C 1.32534 * 111.35887 * 0.04011 * 6 5 4 8 8 C 1.39099 * 119.10151 * 359.97438 * 4 3 2 9 9 C 1.41833 * 117.87557 * 0.06280 * 8 4 3 10 10 N 1.38328 * 120.63670 * 179.97438 * 9 8 4 11 11 C 1.46900 * 110.99995 * 137.58555 * 10 9 8 12 12 C 1.46894 * 110.99939 * 261.53984 * 10 9 8 13 13 H 1.09007 * 109.47233 * 54.99641 * 12 10 9 14 14 C 1.52997 * 109.47470 * 294.99733 * 12 10 9 15 15 C 1.50698 * 109.47172 * 174.99832 * 12 10 9 16 16 H 1.08003 * 120.00012 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00109 * 180.02562 * 15 12 10 18 18 N 1.31509 * 120.00067 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00027 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47111 * 59.99757 * 19 17 15 21 21 H 1.48495 * 109.47320 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46967 * 300.00156 * 19 17 15 23 23 N 1.32084 * 118.86570 * 180.02562 * 2 1 3 24 24 C 1.52875 * 110.19544 * 179.97438 * 7 6 5 25 25 C 1.54131 * 104.90140 * 17.57166 * 24 7 6 26 26 C 1.52610 * 138.11742 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.47199 * 269.98798 * 1 2 3 28 28 H 1.08998 * 109.47344 * 29.98917 * 1 2 3 29 29 H 1.09002 * 109.46988 * 149.98643 * 1 2 3 30 30 H 1.09001 * 109.47184 * 52.70525 * 11 10 9 31 31 H 1.09003 * 109.46715 * 172.70761 * 11 10 9 32 32 H 1.08998 * 109.47219 * 292.70768 * 11 10 9 33 33 H 1.08994 * 109.47130 * 300.00315 * 14 12 10 34 34 H 1.09004 * 109.47024 * 59.99797 * 14 12 10 35 35 H 1.09003 * 109.47364 * 179.97438 * 14 12 10 36 36 H 0.97003 * 120.00320 * 180.02562 * 18 17 15 37 37 H 1.08998 * 110.35633 * 136.42365 * 24 7 6 38 38 H 1.08998 * 110.35243 * 258.60903 * 24 7 6 39 39 H 1.08993 * 111.01378 * 91.49398 * 25 24 7 40 40 H 1.09002 * 111.00772 * 215.32624 * 25 24 7 41 41 H 1.08994 * 110.36808 * 281.26542 * 26 6 5 42 42 H 1.09000 * 110.36479 * 43.58572 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1407 1.1499 0.0000 4 6 3.4807 1.1971 0.0005 5 16 4.5912 2.5547 0.0001 6 6 6.0027 1.4980 0.0021 7 6 5.6493 0.2206 0.0022 8 6 4.1996 0.0063 0.0016 9 6 3.4690 -1.2094 0.0007 10 7 4.1260 -2.4267 0.0012 11 6 3.4842 -3.3710 0.9255 12 6 4.1998 -2.9855 -1.3553 13 1 4.6624 -2.2587 -2.0231 14 6 2.7890 -3.3083 -1.8514 15 6 5.0257 -4.2459 -1.3350 16 1 5.4527 -4.5969 -0.4072 17 6 5.2362 -4.9510 -2.5011 18 7 4.7159 -4.5239 -3.6308 19 14 6.2605 -6.5129 -2.4761 20 1 5.6306 -7.5035 -1.5666 21 1 6.3351 -7.0780 -3.8473 22 1 7.6297 -6.1992 -1.9943 23 7 2.1446 -1.1567 -0.0005 24 6 6.8914 -0.6706 0.0034 25 6 8.0409 0.2522 0.4536 26 6 7.5228 1.6326 0.0036 27 1 -0.3633 -0.0002 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 2.4195 -3.4331 0.7002 31 1 3.9377 -4.3556 0.8118 32 1 3.6191 -3.0249 1.9502 33 1 2.3264 -4.0350 -1.1837 34 1 2.1916 -2.3967 -1.8660 35 1 2.8437 -3.7226 -2.8581 36 1 4.8636 -5.0201 -4.4511 37 1 6.7674 -1.4929 0.7079 38 1 7.0825 -1.0558 -0.9982 39 1 8.1697 0.2168 1.5354 40 1 8.9696 -0.0027 -0.0570 41 1 7.8841 1.8643 -0.9983 42 1 7.8347 2.4038 0.7080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080760338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = 85.407655 kcal Electronic energy + Delta-G solvation = -25010.407819 eV Core-core repulsion = 21696.404181 eV Total energy + Delta-G solvation = -3314.003639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94884 -38.43918 -37.43203 -33.81335 -33.33137 -31.77425 -30.11918 -28.80740 -28.13137 -26.74314 -25.75870 -25.27326 -23.37122 -22.33373 -20.96118 -19.76103 -19.08713 -17.63081 -16.92878 -16.35611 -15.97664 -15.57840 -15.30196 -14.77541 -14.56975 -13.90861 -13.57498 -13.08491 -12.90221 -12.78806 -12.66624 -12.46837 -12.29576 -12.17667 -11.91437 -11.57464 -11.41852 -11.31560 -11.00066 -10.95615 -10.93799 -10.78858 -10.75874 -10.64201 -10.58594 -10.26604 -10.10816 -9.79118 -9.21437 -8.78461 -8.54241 -8.45745 -7.87964 -7.53568 -6.12181 -4.18364 0.74884 1.22889 1.25983 2.05785 2.40415 3.26001 3.31246 3.32886 3.92351 4.13726 4.25351 4.37106 4.53735 4.65330 4.88074 5.05406 5.12570 5.20017 5.26678 5.46977 5.64826 5.66767 5.73777 5.78636 5.84509 5.90546 6.04317 6.09922 6.17947 6.31756 6.34449 6.44020 6.48846 6.61857 6.68781 6.79990 6.90068 6.97980 7.18971 7.37509 7.54422 7.68188 7.85638 8.15874 8.36920 8.42172 8.84552 9.46487 10.94572 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.005688 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.674318 B = 4921.788626 C = 6583.084943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.340 3.660 3 N -0.513 5.513 4 C 0.097 3.903 5 S 0.155 5.845 6 C -0.225 4.225 7 C -0.044 4.044 8 C -0.158 4.158 9 C 0.431 3.569 10 N -0.484 5.484 11 C 0.033 3.967 12 C 0.225 3.775 13 H 0.039 0.961 14 C -0.167 4.167 15 C -0.506 4.506 16 H 0.067 0.933 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.275 1.275 23 N -0.548 5.548 24 C -0.056 4.056 25 C -0.119 4.119 26 C -0.036 4.036 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.019 0.981 35 H 0.087 0.913 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 10.693 7.583 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 N -0.232 5.232 4 C -0.153 4.153 5 S 0.415 5.585 6 C -0.340 4.340 7 C -0.055 4.055 8 C -0.173 4.173 9 C 0.185 3.815 10 N -0.205 5.205 11 C -0.115 4.115 12 C 0.122 3.878 13 H 0.057 0.943 14 C -0.227 4.227 15 C -0.545 4.545 16 H 0.085 0.915 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.268 5.268 24 C -0.096 4.096 25 C -0.158 4.158 26 C -0.076 4.076 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.185 12.329 7.523 14.444 hybrid contribution 0.579 -2.437 -0.420 2.539 sum 0.764 9.892 7.103 12.202 Atomic orbital electron populations 1.20521 0.85796 1.03993 1.03507 1.23003 0.97653 0.82725 0.89898 1.67938 1.05902 1.30202 1.19126 1.23440 0.94506 0.96643 1.00720 1.83651 0.91902 1.03626 1.79298 1.25425 0.99961 0.96609 1.11970 1.20974 0.91678 0.94691 0.98171 1.19972 0.93681 0.93867 1.09813 1.20534 0.85917 0.92017 0.83051 1.60343 1.46231 1.00557 1.13396 1.22298 0.98550 0.97106 0.93512 1.19406 0.93791 0.94935 0.79705 0.94338 1.22395 0.97386 0.98693 1.04178 1.20945 1.31573 1.07167 0.94773 0.91530 1.24905 0.95852 0.97876 0.95290 1.69885 1.44331 1.39604 0.99001 0.86520 0.80685 0.82939 0.77045 1.20208 1.21334 1.20089 1.68571 1.10176 1.29802 1.18291 1.21086 0.87952 0.96815 1.03709 1.22335 0.98360 0.93693 1.01416 1.20878 0.86058 0.98608 1.02025 0.89883 0.89943 0.89524 0.93600 0.89343 0.93858 0.94611 0.96234 0.89399 0.92701 0.89317 0.89195 0.90873 0.89998 0.90069 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.30 36.00 0.37 -0.67 16 2 C 0.34 6.13 7.64 -157.37 -1.20 4.92 16 3 N -0.51 -9.52 10.37 -9.68 -0.10 -9.62 16 4 C 0.10 1.81 7.67 -16.25 -0.12 1.69 16 5 S 0.16 2.33 23.23 -107.50 -2.50 -0.17 16 6 C -0.22 -3.37 7.24 -35.27 -0.26 -3.62 16 7 C -0.04 -0.76 6.60 -102.10 -0.67 -1.44 16 8 C -0.16 -3.13 6.07 -104.86 -0.64 -3.77 16 9 C 0.43 9.04 5.18 -154.51 -0.80 8.24 16 10 N -0.48 -10.42 4.65 -174.05 -0.81 -11.23 16 11 C 0.03 0.65 8.51 60.06 0.51 1.16 16 12 C 0.22 5.52 2.31 -68.87 -0.16 5.37 16 13 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 14 C -0.17 -4.10 8.11 37.16 0.30 -3.80 16 15 C -0.51 -13.01 7.78 -34.44 -0.27 -13.28 16 16 H 0.07 1.68 6.83 -52.48 -0.36 1.32 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 19 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 N -0.55 -11.00 7.23 -9.58 -0.07 -11.07 16 24 C -0.06 -0.88 6.82 -26.20 -0.18 -1.06 16 25 C -0.12 -1.37 7.13 -25.54 -0.18 -1.55 16 26 C -0.04 -0.41 6.82 -26.33 -0.18 -0.59 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.92 6.17 -51.93 -0.32 0.60 16 31 H 0.09 1.78 6.26 -51.93 -0.32 1.46 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.85 6.65 -51.93 -0.35 0.50 16 34 H 0.02 0.45 6.22 -51.93 -0.32 0.13 16 35 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -28.99 347.19 -11.98 -40.97 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.77 Total: 1.29 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.57 Total: -6.85 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.35 Total: -55.82 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.50 Total: -0.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.99 -11.98 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.375 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds