Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31300 * 118.85935 * 2 1 4 4 C 1.34087 * 120.87654 * 179.97438 * 3 2 1 5 5 S 1.75393 * 131.29910 * 179.97438 * 4 3 2 6 6 C 1.76323 * 92.45988 * 179.97438 * 5 4 3 7 7 C 1.32534 * 111.35887 * 0.04011 * 6 5 4 8 8 C 1.39099 * 119.10151 * 359.97438 * 4 3 2 9 9 C 1.41833 * 117.87557 * 0.06280 * 8 4 3 10 10 N 1.38328 * 120.63670 * 179.97438 * 9 8 4 11 11 C 1.46900 * 110.99995 * 137.58555 * 10 9 8 12 12 C 1.46894 * 110.99939 * 261.53984 * 10 9 8 13 13 H 1.09007 * 109.47233 * 54.99641 * 12 10 9 14 14 C 1.52997 * 109.47470 * 294.99733 * 12 10 9 15 15 C 1.50698 * 109.47172 * 174.99832 * 12 10 9 16 16 H 1.08003 * 120.00012 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00109 * 180.02562 * 15 12 10 18 18 N 1.31509 * 120.00067 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00027 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47111 * 59.99757 * 19 17 15 21 21 H 1.48495 * 109.47320 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46967 * 300.00156 * 19 17 15 23 23 N 1.32084 * 118.86570 * 180.02562 * 2 1 3 24 24 C 1.52875 * 110.19544 * 179.97438 * 7 6 5 25 25 C 1.54131 * 104.90140 * 17.57166 * 24 7 6 26 26 C 1.52610 * 138.11742 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.47199 * 269.98798 * 1 2 3 28 28 H 1.08998 * 109.47344 * 29.98917 * 1 2 3 29 29 H 1.09002 * 109.46988 * 149.98643 * 1 2 3 30 30 H 1.09001 * 109.47184 * 52.70525 * 11 10 9 31 31 H 1.09003 * 109.46715 * 172.70761 * 11 10 9 32 32 H 1.08998 * 109.47219 * 292.70768 * 11 10 9 33 33 H 1.08994 * 109.47130 * 300.00315 * 14 12 10 34 34 H 1.09004 * 109.47024 * 59.99797 * 14 12 10 35 35 H 1.09003 * 109.47364 * 179.97438 * 14 12 10 36 36 H 0.97003 * 120.00320 * 180.02562 * 18 17 15 37 37 H 1.08998 * 110.35633 * 136.42365 * 24 7 6 38 38 H 1.08998 * 110.35243 * 258.60903 * 24 7 6 39 39 H 1.08993 * 111.01378 * 91.49398 * 25 24 7 40 40 H 1.09002 * 111.00772 * 215.32624 * 25 24 7 41 41 H 1.08994 * 110.36808 * 281.26542 * 26 6 5 42 42 H 1.09000 * 110.36479 * 43.58572 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1407 1.1499 0.0000 4 6 3.4807 1.1971 0.0005 5 16 4.5912 2.5547 0.0001 6 6 6.0027 1.4980 0.0021 7 6 5.6493 0.2206 0.0022 8 6 4.1996 0.0063 0.0016 9 6 3.4690 -1.2094 0.0007 10 7 4.1260 -2.4267 0.0012 11 6 3.4842 -3.3710 0.9255 12 6 4.1998 -2.9855 -1.3553 13 1 4.6624 -2.2587 -2.0231 14 6 2.7890 -3.3083 -1.8514 15 6 5.0257 -4.2459 -1.3350 16 1 5.4527 -4.5969 -0.4072 17 6 5.2362 -4.9510 -2.5011 18 7 4.7159 -4.5239 -3.6308 19 14 6.2605 -6.5129 -2.4761 20 1 5.6306 -7.5035 -1.5666 21 1 6.3351 -7.0780 -3.8473 22 1 7.6297 -6.1992 -1.9943 23 7 2.1446 -1.1567 -0.0005 24 6 6.8914 -0.6706 0.0034 25 6 8.0409 0.2522 0.4536 26 6 7.5228 1.6326 0.0036 27 1 -0.3633 -0.0002 1.0276 28 1 -0.3634 0.8901 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 2.4195 -3.4331 0.7002 31 1 3.9377 -4.3556 0.8118 32 1 3.6191 -3.0249 1.9502 33 1 2.3264 -4.0350 -1.1837 34 1 2.1916 -2.3967 -1.8660 35 1 2.8437 -3.7226 -2.8581 36 1 4.8636 -5.0201 -4.4511 37 1 6.7674 -1.4929 0.7079 38 1 7.0825 -1.0558 -0.9982 39 1 8.1697 0.2168 1.5354 40 1 8.9696 -0.0027 -0.0570 41 1 7.8841 1.8643 -0.9983 42 1 7.8347 2.4038 0.7080 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080760338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = 70.374724 kcal Electronic energy + Delta-G solvation = -25011.059696 eV Core-core repulsion = 21696.404181 eV Total energy + Delta-G solvation = -3314.655515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38073 -39.62978 -39.10179 -35.19455 -35.07897 -33.40343 -31.33507 -30.65154 -29.30930 -28.04669 -27.35473 -27.15030 -24.90535 -23.80971 -22.20012 -21.37566 -20.36252 -18.95965 -18.49765 -18.26164 -17.35572 -17.09014 -16.60618 -16.21709 -16.14174 -15.56818 -15.07155 -14.72581 -14.26675 -14.03972 -13.93264 -13.80457 -13.55581 -13.34858 -13.24458 -13.19783 -12.99865 -12.88581 -12.69798 -12.61779 -12.53917 -12.20473 -12.17690 -12.04415 -11.97802 -11.91736 -11.78820 -11.21232 -11.11788 -10.55421 -10.34106 -9.84069 -9.45196 -8.90576 -8.14846 -6.27993 -0.62566 -0.25506 -0.03679 0.77834 1.09224 1.45673 1.46913 1.54563 2.36313 2.51098 2.68826 2.98732 3.15551 3.26359 3.40778 3.55436 3.82251 4.02251 4.18906 4.23495 4.39805 4.60943 4.64845 4.65901 4.68434 4.72253 4.75136 4.82008 4.89132 4.90202 4.97850 5.02309 5.08014 5.08719 5.18606 5.22746 5.38684 5.42229 5.44180 5.56455 5.67999 5.71342 6.01175 6.18213 6.52417 6.80510 6.96720 7.40856 8.91755 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.005688 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.674318 B = 4921.788626 C = 6583.084943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.323 3.677 3 N -0.515 5.515 4 C 0.068 3.932 5 S 0.214 5.786 6 C -0.207 4.207 7 C -0.088 4.088 8 C -0.179 4.179 9 C 0.403 3.597 10 N -0.484 5.484 11 C 0.040 3.960 12 C 0.239 3.761 13 H -0.003 1.003 14 C -0.149 4.149 15 C -0.514 4.514 16 H 0.069 0.931 17 C 0.016 3.984 18 N -0.921 5.921 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.267 1.267 23 N -0.562 5.562 24 C -0.055 4.055 25 C -0.107 4.107 26 C -0.034 4.034 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.019 0.981 35 H 0.062 0.938 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 12.050 8.785 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 N -0.234 5.234 4 C -0.183 4.183 5 S 0.474 5.526 6 C -0.322 4.322 7 C -0.099 4.099 8 C -0.194 4.194 9 C 0.158 3.842 10 N -0.205 5.205 11 C -0.107 4.107 12 C 0.135 3.865 13 H 0.014 0.986 14 C -0.208 4.208 15 C -0.552 4.552 16 H 0.087 0.913 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.192 1.192 23 N -0.283 5.283 24 C -0.095 4.095 25 C -0.145 4.145 26 C -0.073 4.073 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.398 13.705 8.750 16.320 hybrid contribution 0.177 -2.706 -0.781 2.822 sum 1.575 10.999 7.969 13.674 Atomic orbital electron populations 1.20663 0.82555 1.04860 1.05172 1.23882 0.99543 0.82136 0.89302 1.68062 1.05989 1.30302 1.19038 1.24067 0.95010 0.98184 1.01011 1.83409 0.90175 1.01174 1.77794 1.26108 1.02084 0.95804 1.08241 1.21173 0.91160 0.96332 1.01226 1.20314 0.95266 0.93885 1.09954 1.20632 0.86688 0.92046 0.84858 1.60181 1.47347 1.01103 1.11898 1.22251 0.97857 0.96521 0.94111 1.19003 0.93039 0.93579 0.80889 0.98560 1.22174 0.97675 0.98413 1.02552 1.21179 1.31591 1.07480 0.94959 0.91255 1.25708 0.96857 1.00892 0.94839 1.70031 1.45575 1.40898 0.99548 0.85498 0.79354 0.79168 0.76967 1.19401 1.21371 1.19239 1.68530 1.09972 1.31081 1.18703 1.21062 0.89344 0.97205 1.01853 1.22350 0.97296 0.92354 1.02531 1.21099 0.82976 0.99383 1.03889 0.87653 0.88282 0.89336 0.94189 0.90011 0.92004 0.94377 0.96220 0.91946 0.92817 0.91218 0.91822 0.89413 0.87861 0.88468 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 10.30 71.23 0.73 -1.14 16 2 C 0.32 11.69 7.64 138.81 1.06 12.75 16 3 N -0.51 -19.01 10.37 -184.54 -1.91 -20.92 16 4 C 0.07 2.51 7.67 84.56 0.65 3.16 16 5 S 0.21 6.00 23.23 -56.49 -1.31 4.69 16 6 C -0.21 -5.82 7.24 25.16 0.18 -5.64 16 7 C -0.09 -3.08 6.60 -18.14 -0.12 -3.20 16 8 C -0.18 -7.25 6.07 -20.02 -0.12 -7.37 16 9 C 0.40 17.53 5.18 133.92 0.69 18.23 16 10 N -0.48 -21.69 4.65 -704.56 -3.28 -24.97 16 11 C 0.04 1.60 8.51 127.69 1.09 2.69 16 12 C 0.24 12.34 2.31 44.17 0.10 12.44 16 13 H 0.00 -0.21 8.11 -2.38 -0.02 -0.23 16 14 C -0.15 -7.63 8.11 71.98 0.58 -7.04 16 15 C -0.51 -27.19 7.78 25.60 0.20 -26.99 16 16 H 0.07 3.56 6.83 -2.91 -0.02 3.54 16 17 C 0.02 0.87 5.30 84.66 0.45 1.32 16 18 N -0.92 -52.37 11.32 21.45 0.24 -52.13 16 19 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 N -0.56 -23.12 7.23 -184.23 -1.33 -24.45 16 24 C -0.06 -1.75 6.82 30.94 0.21 -1.54 16 25 C -0.11 -2.18 7.13 31.37 0.22 -1.96 16 26 C -0.03 -0.66 6.82 30.86 0.21 -0.45 16 27 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.63 6.17 -2.39 -0.01 1.62 16 31 H 0.08 3.36 6.26 -2.39 -0.01 3.35 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.04 1.87 6.65 -2.39 -0.02 1.85 16 34 H 0.02 0.96 6.22 -2.38 -0.01 0.94 16 35 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 36 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -65.33 347.19 1.62 -63.71 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.04 Total: 14.69 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 6.14 Total: -4.73 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -6.28 Total: -122.47 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.31 Total: 4.69 kcal Total: -65.33 1.62 -63.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.086 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds