Wall clock time and date at job start Tue Mar 31 2020 11:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47419 * 2 1 4 4 N 1.29029 * 124.91511 * 85.51393 * 3 2 1 5 5 C 1.31778 * 117.12166 * 180.02562 * 4 3 2 6 6 C 1.50704 * 122.74930 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47171 * 275.54820 * 6 5 4 8 8 C 1.46895 * 110.99851 * 160.81611 * 7 6 5 9 9 C 1.50701 * 109.47293 * 288.42633 * 8 7 6 10 10 H 1.08004 * 120.00003 * 1.97304 * 9 8 7 11 11 C 1.37876 * 120.00354 * 181.97823 * 9 8 7 12 12 N 1.31515 * 119.99574 * 6.22397 * 11 9 8 13 13 Si 1.86798 * 120.00413 * 186.22461 * 11 9 8 14 14 H 1.48496 * 109.46973 * 94.91036 * 13 11 9 15 15 H 1.48500 * 109.47229 * 214.91335 * 13 11 9 16 16 H 1.48504 * 109.46874 * 334.91304 * 13 11 9 17 17 C 1.46899 * 111.00185 * 284.77305 * 7 6 5 18 18 C 1.50698 * 109.47514 * 170.00106 * 17 7 6 19 19 C 1.38222 * 119.62054 * 94.97113 * 18 17 7 20 20 C 1.38627 * 119.15972 * 179.79283 * 19 18 17 21 21 C 1.38674 * 118.42113 * 0.47635 * 20 19 18 22 22 C 1.38178 * 119.16137 * 359.50634 * 21 20 19 23 23 N 1.31856 * 119.61427 * 275.00342 * 18 17 7 24 24 C 1.33643 * 114.50169 * 0.23518 * 5 4 3 25 25 S 1.70974 * 124.91692 * 265.51754 * 3 2 1 26 26 H 1.09001 * 109.47153 * 304.21479 * 1 2 3 27 27 H 1.09005 * 109.46654 * 64.20965 * 1 2 3 28 28 H 1.08995 * 109.47273 * 184.21289 * 1 2 3 29 29 H 1.09002 * 109.46773 * 239.99741 * 2 1 3 30 30 H 1.09006 * 109.46800 * 120.00043 * 2 1 3 31 31 H 1.09001 * 109.47158 * 155.54601 * 6 5 4 32 32 H 1.09001 * 109.46718 * 35.54840 * 6 5 4 33 33 H 1.08994 * 109.47232 * 48.42746 * 8 7 6 34 34 H 1.09002 * 109.47191 * 168.42700 * 8 7 6 35 35 H 0.97008 * 119.99965 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47280 * 49.99742 * 17 7 6 37 37 H 1.08999 * 109.46850 * 289.99975 * 17 7 6 38 38 H 1.08002 * 120.41826 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.78650 * 180.23377 * 20 19 18 40 40 H 1.08003 * 120.41602 * 179.78091 * 21 20 19 41 41 H 1.08000 * 119.61752 * 180.25061 * 22 21 20 42 42 H 1.08004 * 126.03846 * 179.77206 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2006 2.1446 1.0548 5 6 2.6486 3.3711 0.8766 6 6 2.8901 4.3247 2.0183 7 7 1.6325 4.9985 2.3679 8 6 1.7000 5.5709 3.7191 9 6 1.6676 4.4605 4.7374 10 1 1.6355 3.4309 4.4128 11 6 1.6789 4.7589 6.0834 12 7 1.5942 6.0098 6.4803 13 14 1.8144 3.3864 7.3433 14 1 3.2369 3.2087 7.7306 15 1 1.0143 3.7362 8.5444 16 1 1.2997 2.1231 6.7563 17 6 1.2933 6.0278 1.3763 18 6 -0.1077 6.5237 1.6260 19 6 -0.3047 7.6591 2.3892 20 6 -1.5973 8.1093 2.6092 21 6 -2.6487 7.3916 2.0591 22 6 -2.3745 6.2656 1.3067 23 7 -1.1315 5.8690 1.1143 24 6 2.8659 3.7017 -0.3999 25 16 2.4620 2.3069 -1.3977 26 1 -0.3633 0.5779 0.8498 27 1 -0.3633 0.4471 -0.9254 28 1 -0.3633 -1.0248 0.0755 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.6299 5.0678 1.7207 32 1 3.2582 3.7713 2.8822 33 1 2.6250 6.1370 3.8280 34 1 0.8483 6.2329 3.8762 35 1 1.6018 6.2198 7.4274 36 1 1.3549 5.6020 0.3749 37 1 1.9934 6.8589 1.4614 38 1 0.5380 8.1910 2.8057 39 1 -1.7812 8.9956 3.1983 40 1 -3.6687 7.7114 2.2132 41 1 -3.1875 5.7034 0.8715 42 1 3.2275 4.6549 -0.7567 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081160371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:34 Heat of formation + Delta-G solvation = 82.830591 kcal Electronic energy + Delta-G solvation = -23983.134657 eV Core-core repulsion = 20669.019268 eV Total energy + Delta-G solvation = -3314.115389 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.89961 -39.50535 -36.55632 -33.91336 -32.63439 -32.01951 -31.35080 -29.63519 -27.40945 -26.82794 -25.16269 -24.07132 -23.12989 -22.03872 -21.47040 -20.09971 -19.38462 -17.32066 -16.48962 -16.35401 -15.75306 -15.32128 -15.27041 -14.79803 -14.65592 -14.35921 -14.04697 -13.81423 -13.47886 -13.05473 -12.98356 -12.84203 -12.43363 -12.24621 -11.99055 -11.88011 -11.69174 -11.49971 -11.37718 -11.06556 -10.95970 -10.76355 -10.65647 -10.38473 -9.86371 -9.46374 -9.24494 -9.19004 -9.08293 -8.95707 -8.58876 -8.39616 -8.33145 -7.29049 -5.99930 -3.98087 1.01432 1.52197 1.64732 1.72628 2.00101 3.18397 3.35084 3.41426 3.48631 4.17587 4.30237 4.48868 4.72827 5.01278 5.07065 5.17925 5.20700 5.26204 5.29102 5.36590 5.43786 5.44385 5.54965 5.64948 5.72521 5.81862 5.84452 5.90302 5.99823 6.07580 6.14540 6.19910 6.25808 6.39584 6.52994 6.57765 6.63056 7.09366 7.21224 7.25248 7.86097 8.05038 8.16175 8.22073 8.48258 8.55036 9.10650 9.65121 11.11041 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.005467 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.195178 B = 5120.229327 C = 7048.212239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.054 3.946 4 N -0.443 5.443 5 C 0.104 3.896 6 C 0.131 3.869 7 N -0.516 5.516 8 C 0.188 3.812 9 C -0.501 4.501 10 H 0.067 0.933 11 C 0.056 3.944 12 N -0.900 5.900 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.099 3.901 18 C 0.155 3.845 19 C -0.153 4.153 20 C -0.077 4.077 21 C -0.184 4.184 22 C 0.092 3.908 23 N -0.467 5.467 24 C -0.263 4.263 25 S 0.075 5.925 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.105 0.895 33 H -0.011 1.011 34 H 0.043 0.957 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 -2.359 -15.458 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.225 4.225 4 N -0.156 5.156 5 C -0.028 4.028 6 C 0.001 3.999 7 N -0.241 5.241 8 C 0.064 3.936 9 C -0.540 4.540 10 H 0.085 0.915 11 C -0.145 4.145 12 N -0.540 5.540 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.196 1.196 17 C -0.030 4.030 18 C 0.016 3.984 19 C -0.173 4.173 20 C -0.103 4.103 21 C -0.204 4.204 22 C -0.065 4.065 23 N -0.176 5.176 24 C -0.402 4.402 25 S 0.329 5.671 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.007 0.993 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.207 -3.782 -16.346 16.922 hybrid contribution 0.526 1.458 2.124 2.629 sum -1.681 -2.325 -14.221 14.508 Atomic orbital electron populations 1.21751 0.93535 1.02206 1.02972 1.20172 0.96838 0.87819 1.03655 1.27063 1.03342 1.01551 0.90566 1.66055 1.13533 1.05256 1.30760 1.20421 0.97115 0.91246 0.94016 1.20549 0.91028 0.93539 0.94804 1.61927 1.30981 1.27681 1.03485 1.19908 0.96223 0.95389 0.82129 1.21202 1.49260 0.93583 0.89928 0.91469 1.24943 0.95534 0.95516 0.98472 1.69966 1.51116 1.17412 1.15488 0.86531 0.77883 0.82571 0.80812 1.20807 1.21418 1.19643 1.20967 0.89953 0.94273 0.97790 1.21034 0.94852 0.90224 0.92262 1.22007 0.98098 0.98223 0.98963 1.21482 0.92613 0.99181 0.97020 1.22013 0.99785 0.97909 1.00660 1.22632 0.93994 0.94011 0.95850 1.67450 0.99195 1.29700 1.21289 1.26735 1.14280 1.03410 0.95783 1.83635 1.61951 1.06917 1.14568 0.91384 0.92592 0.91806 0.90216 0.88943 0.94126 0.87711 0.99292 0.93935 0.93102 0.90343 0.94294 0.84982 0.85290 0.85496 0.83473 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.90 37.16 0.37 -1.29 16 2 C -0.04 -0.51 6.52 -27.88 -0.18 -0.69 16 3 C 0.05 0.82 6.64 -13.46 -0.09 0.73 16 4 N -0.44 -8.35 10.53 -8.06 -0.08 -8.44 16 5 C 0.10 1.89 5.86 -84.22 -0.49 1.40 16 6 C 0.13 2.61 5.26 -4.98 -0.03 2.58 16 7 N -0.52 -11.36 4.37 -238.97 -1.04 -12.41 16 8 C 0.19 4.83 4.58 -4.98 -0.02 4.81 16 9 C -0.50 -14.29 8.36 -34.44 -0.29 -14.58 16 10 H 0.07 1.98 7.61 -52.48 -0.40 1.58 16 11 C 0.06 1.61 5.45 -17.82 -0.10 1.51 16 12 N -0.90 -26.59 13.30 55.43 0.74 -25.86 16 13 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 17 C 0.10 1.86 5.11 -4.98 -0.03 1.84 16 18 C 0.15 2.98 5.70 -82.59 -0.47 2.51 16 19 C -0.15 -2.72 8.03 -39.44 -0.32 -3.04 16 20 C -0.08 -1.20 10.18 -39.28 -0.40 -1.60 16 21 C -0.18 -2.67 10.11 -39.44 -0.40 -3.06 16 22 C 0.09 1.48 11.18 -17.55 -0.20 1.29 16 23 N -0.47 -9.00 10.27 -9.48 -0.10 -9.10 16 24 C -0.26 -3.94 9.90 29.12 0.29 -3.65 16 25 S 0.08 0.98 23.18 -107.50 -2.49 -1.51 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16 32 H 0.10 2.32 6.98 -51.93 -0.36 1.96 16 33 H -0.01 -0.28 8.06 -51.93 -0.42 -0.70 16 34 H 0.04 1.16 5.56 -51.93 -0.29 0.87 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.08 1.40 6.45 -51.93 -0.33 1.06 16 37 H 0.04 0.67 8.02 -51.93 -0.42 0.26 16 38 H 0.13 2.28 8.01 -52.49 -0.42 1.86 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -33.18 365.19 -10.84 -44.02 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.99 Total: 1.85 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -2.35 Total: -11.25 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.49 Total: -55.80 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.18 -10.84 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081160371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.851 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds