Wall clock time and date at job start Tue Mar 31 2020 11:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47419 * 2 1 4 4 N 1.29029 * 124.91511 * 85.51393 * 3 2 1 5 5 C 1.31778 * 117.12166 * 180.02562 * 4 3 2 6 6 C 1.50704 * 122.74930 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.47171 * 275.54820 * 6 5 4 8 8 C 1.46895 * 110.99851 * 160.81611 * 7 6 5 9 9 C 1.50701 * 109.47293 * 288.42633 * 8 7 6 10 10 H 1.08004 * 120.00003 * 1.97304 * 9 8 7 11 11 C 1.37876 * 120.00354 * 181.97823 * 9 8 7 12 12 N 1.31515 * 119.99574 * 6.22397 * 11 9 8 13 13 Si 1.86798 * 120.00413 * 186.22461 * 11 9 8 14 14 H 1.48496 * 109.46973 * 94.91036 * 13 11 9 15 15 H 1.48500 * 109.47229 * 214.91335 * 13 11 9 16 16 H 1.48504 * 109.46874 * 334.91304 * 13 11 9 17 17 C 1.46899 * 111.00185 * 284.77305 * 7 6 5 18 18 C 1.50698 * 109.47514 * 170.00106 * 17 7 6 19 19 C 1.38222 * 119.62054 * 94.97113 * 18 17 7 20 20 C 1.38627 * 119.15972 * 179.79283 * 19 18 17 21 21 C 1.38674 * 118.42113 * 0.47635 * 20 19 18 22 22 C 1.38178 * 119.16137 * 359.50634 * 21 20 19 23 23 N 1.31856 * 119.61427 * 275.00342 * 18 17 7 24 24 C 1.33643 * 114.50169 * 0.23518 * 5 4 3 25 25 S 1.70974 * 124.91692 * 265.51754 * 3 2 1 26 26 H 1.09001 * 109.47153 * 304.21479 * 1 2 3 27 27 H 1.09005 * 109.46654 * 64.20965 * 1 2 3 28 28 H 1.08995 * 109.47273 * 184.21289 * 1 2 3 29 29 H 1.09002 * 109.46773 * 239.99741 * 2 1 3 30 30 H 1.09006 * 109.46800 * 120.00043 * 2 1 3 31 31 H 1.09001 * 109.47158 * 155.54601 * 6 5 4 32 32 H 1.09001 * 109.46718 * 35.54840 * 6 5 4 33 33 H 1.08994 * 109.47232 * 48.42746 * 8 7 6 34 34 H 1.09002 * 109.47191 * 168.42700 * 8 7 6 35 35 H 0.97008 * 119.99965 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47280 * 49.99742 * 17 7 6 37 37 H 1.08999 * 109.46850 * 289.99975 * 17 7 6 38 38 H 1.08002 * 120.41826 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.78650 * 180.23377 * 20 19 18 40 40 H 1.08003 * 120.41602 * 179.78091 * 21 20 19 41 41 H 1.08000 * 119.61752 * 180.25061 * 22 21 20 42 42 H 1.08004 * 126.03846 * 179.77206 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2006 2.1446 1.0548 5 6 2.6486 3.3711 0.8766 6 6 2.8901 4.3247 2.0183 7 7 1.6325 4.9985 2.3679 8 6 1.7000 5.5709 3.7191 9 6 1.6676 4.4605 4.7374 10 1 1.6355 3.4309 4.4128 11 6 1.6789 4.7589 6.0834 12 7 1.5942 6.0098 6.4803 13 14 1.8144 3.3864 7.3433 14 1 3.2369 3.2087 7.7306 15 1 1.0143 3.7362 8.5444 16 1 1.2997 2.1231 6.7563 17 6 1.2933 6.0278 1.3763 18 6 -0.1077 6.5237 1.6260 19 6 -0.3047 7.6591 2.3892 20 6 -1.5973 8.1093 2.6092 21 6 -2.6487 7.3916 2.0591 22 6 -2.3745 6.2656 1.3067 23 7 -1.1315 5.8690 1.1143 24 6 2.8659 3.7017 -0.3999 25 16 2.4620 2.3069 -1.3977 26 1 -0.3633 0.5779 0.8498 27 1 -0.3633 0.4471 -0.9254 28 1 -0.3633 -1.0248 0.0755 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.6299 5.0678 1.7207 32 1 3.2582 3.7713 2.8822 33 1 2.6250 6.1370 3.8280 34 1 0.8483 6.2329 3.8762 35 1 1.6018 6.2198 7.4274 36 1 1.3549 5.6020 0.3749 37 1 1.9934 6.8589 1.4614 38 1 0.5380 8.1910 2.8057 39 1 -1.7812 8.9956 3.1983 40 1 -3.6687 7.7114 2.2132 41 1 -3.1875 5.7034 0.8715 42 1 3.2275 4.6549 -0.7567 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081160371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:33 Heat of formation + Delta-G solvation = 61.200529 kcal Electronic energy + Delta-G solvation = -23984.072607 eV Core-core repulsion = 20669.019268 eV Total energy + Delta-G solvation = -3315.053338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.22773 -40.76360 -38.16072 -35.06690 -34.63347 -33.34734 -32.70261 -31.01092 -29.25237 -28.23326 -26.34144 -25.77035 -24.42348 -23.62762 -22.64878 -21.67918 -20.59935 -18.72676 -18.36705 -17.69089 -17.22938 -16.70190 -16.58745 -16.36555 -16.27173 -15.60475 -15.31708 -15.20459 -14.90935 -14.46146 -14.23064 -14.07928 -13.98641 -13.78580 -13.43420 -13.21668 -13.12033 -13.02780 -12.67712 -12.60672 -12.50170 -12.39621 -12.11250 -11.97512 -11.75983 -11.35519 -10.74211 -10.56152 -10.41388 -10.30090 -10.23668 -9.87205 -9.57287 -9.00986 -8.20623 -6.26290 -0.15768 0.23200 0.45307 0.53593 0.81560 1.36341 1.36485 1.49606 1.88680 2.39379 2.85388 3.11327 3.19295 3.43946 3.55323 3.87726 3.94519 4.04851 4.20122 4.23756 4.28621 4.29699 4.35709 4.36629 4.47891 4.54215 4.65701 4.68790 4.80076 4.86741 4.91359 4.97820 5.10439 5.13172 5.22867 5.26042 5.29279 5.33152 5.37063 5.67230 5.85947 6.07018 6.30852 6.58379 6.87012 7.02586 7.17505 7.40856 8.89688 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.005467 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.195178 B = 5120.229327 C = 7048.212239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 C 0.038 3.962 4 N -0.496 5.496 5 C 0.076 3.924 6 C 0.136 3.864 7 N -0.529 5.529 8 C 0.207 3.793 9 C -0.517 4.517 10 H 0.048 0.952 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.956 3.044 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.275 1.275 17 C 0.104 3.896 18 C 0.127 3.873 19 C -0.172 4.172 20 C -0.082 4.082 21 C -0.172 4.172 22 C 0.080 3.920 23 N -0.498 5.498 24 C -0.263 4.263 25 S 0.156 5.844 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.069 0.931 33 H -0.031 1.031 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.126 0.874 39 H 0.157 0.843 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 -3.007 -17.132 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.240 4.240 4 N -0.211 5.211 5 C -0.056 4.056 6 C 0.006 3.994 7 N -0.253 5.253 8 C 0.082 3.918 9 C -0.556 4.556 10 H 0.066 0.934 11 C -0.188 4.188 12 N -0.567 5.567 13 Si 0.782 3.218 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.200 1.200 17 C -0.024 4.024 18 C -0.011 4.011 19 C -0.193 4.193 20 C -0.107 4.107 21 C -0.191 4.191 22 C -0.077 4.077 23 N -0.208 5.208 24 C -0.402 4.402 25 S 0.411 5.589 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.087 0.913 33 H -0.014 1.014 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.175 0.825 40 H 0.186 0.814 41 H 0.195 0.805 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.285 -4.437 -18.045 18.871 hybrid contribution 0.795 1.654 2.521 3.118 sum -2.490 -2.784 -15.524 15.967 Atomic orbital electron populations 1.21717 0.93331 1.03252 1.01669 1.20375 0.96906 0.86210 1.05150 1.27637 1.02575 1.02763 0.91074 1.66012 1.15582 1.06165 1.33323 1.20106 0.99808 0.91324 0.94388 1.20392 0.90506 0.93930 0.94592 1.61797 1.32392 1.28624 1.02535 1.19493 0.94234 0.94032 0.84075 1.21381 1.49588 0.93374 0.91222 0.93391 1.25701 0.95053 0.97844 1.00223 1.70056 1.51567 1.18968 1.16083 0.85564 0.78396 0.79430 0.78421 1.19651 1.20366 1.20040 1.20958 0.90595 0.93771 0.97097 1.21079 0.94977 0.91205 0.93800 1.22103 0.99332 0.98377 0.99452 1.21899 0.91891 1.00095 0.96847 1.22454 1.01460 0.96582 0.98636 1.23249 0.93657 0.94844 0.95944 1.67414 1.00398 1.30584 1.22401 1.27040 1.12521 1.05278 0.95396 1.83274 1.59821 1.04181 1.11656 0.95043 0.91817 0.89207 0.86665 0.89469 0.92363 0.91298 1.01373 0.95674 0.92740 0.89424 0.93314 0.85602 0.82538 0.81367 0.80534 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.90 71.98 0.71 -2.33 16 2 C -0.05 -1.00 6.52 29.85 0.19 -0.81 16 3 C 0.04 1.11 6.64 88.52 0.59 1.70 16 4 N -0.50 -19.23 10.53 -179.40 -1.89 -21.11 16 5 C 0.08 2.81 5.86 41.52 0.24 3.05 16 6 C 0.14 5.70 5.26 85.56 0.45 6.15 16 7 N -0.53 -24.47 4.37 -909.97 -3.97 -28.44 16 8 C 0.21 11.25 4.58 85.56 0.39 11.64 16 9 C -0.52 -30.90 8.36 25.60 0.21 -30.69 16 10 H 0.05 2.99 7.61 -2.91 -0.02 2.97 16 11 C 0.01 0.59 5.45 84.65 0.46 1.06 16 12 N -0.93 -55.93 13.30 21.45 0.29 -55.65 16 13 Si 0.96 46.58 29.54 68.60 2.03 48.60 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 17 C 0.10 4.05 5.11 85.56 0.44 4.49 16 18 C 0.13 5.01 5.70 42.55 0.24 5.25 16 19 C -0.17 -6.27 8.03 22.36 0.18 -6.09 16 20 C -0.08 -2.44 10.18 22.47 0.23 -2.21 16 21 C -0.17 -4.58 10.11 22.36 0.23 -4.35 16 22 C 0.08 2.46 11.18 84.67 0.95 3.41 16 23 N -0.50 -19.23 10.27 -183.89 -1.89 -21.12 16 24 C -0.26 -7.60 9.90 66.78 0.66 -6.94 16 25 S 0.16 3.70 23.18 -56.49 -1.31 2.39 16 26 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 27 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.06 2.14 7.96 -2.39 -0.02 2.12 16 32 H 0.07 3.31 6.98 -2.39 -0.02 3.29 16 33 H -0.03 -1.78 8.06 -2.39 -0.02 -1.80 16 34 H 0.03 1.45 5.56 -2.39 -0.01 1.43 16 35 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 36 H 0.09 3.17 6.45 -2.39 -0.02 3.15 16 37 H 0.05 1.75 8.02 -2.39 -0.02 1.73 16 38 H 0.13 4.57 8.01 -2.91 -0.02 4.55 16 39 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 40 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.19 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -75.41 365.19 0.44 -74.97 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 1.01 Total: 17.03 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 6.18 Total: -16.66 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -7.47 Total: -126.32 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.31 Total: 2.39 kcal Total: -75.41 0.44 -74.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081160371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.170 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds