Wall clock time and date at job start Tue Mar 31 2020 11:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31781 * 122.74726 * 2 1 4 4 C 1.29021 * 117.12374 * 180.02562 * 3 2 1 5 5 C 1.50704 * 124.91804 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47259 * 90.00348 * 5 4 3 7 7 C 1.46898 * 110.99720 * 66.04641 * 6 5 4 8 8 C 1.50699 * 109.47155 * 193.95501 * 7 6 5 9 9 H 1.08004 * 119.99782 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00305 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99927 * 179.97438 * 10 8 7 12 12 Si 1.86790 * 119.99730 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47312 * 89.99882 * 12 10 8 14 14 H 1.48504 * 109.47106 * 209.99798 * 12 10 8 15 15 H 1.48503 * 109.47573 * 329.99827 * 12 10 8 16 16 C 1.46898 * 110.99845 * 190.00318 * 6 5 4 17 17 C 1.50707 * 109.46592 * 170.00327 * 16 6 5 18 18 C 1.38227 * 119.62024 * 94.97729 * 17 16 6 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 274.99481 * 17 16 6 23 23 S 1.70980 * 110.16801 * 0.23492 * 4 3 2 24 24 C 1.33639 * 122.75193 * 180.02562 * 2 1 3 25 25 C 1.50703 * 126.03349 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.47523 * 89.97744 * 1 2 3 27 27 H 1.09008 * 109.47230 * 209.97550 * 1 2 3 28 28 H 1.08999 * 109.47799 * 329.97567 * 1 2 3 29 29 H 1.09005 * 109.47002 * 330.00390 * 5 4 3 30 30 H 1.08999 * 109.47250 * 210.00922 * 5 4 3 31 31 H 1.09002 * 109.47442 * 313.95778 * 7 6 5 32 32 H 1.08997 * 109.47281 * 73.95810 * 7 6 5 33 33 H 0.97004 * 119.99712 * 179.97438 * 11 10 8 34 34 H 1.08993 * 109.47549 * 49.99892 * 16 6 5 35 35 H 1.08997 * 109.47171 * 289.99469 * 16 6 5 36 36 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 38 38 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 39 39 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 40 40 H 1.09001 * 109.46993 * 90.00526 * 25 24 2 41 41 H 1.09005 * 109.46631 * 209.99804 * 25 24 2 42 42 H 1.08993 * 109.47222 * 329.99633 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1084 0.0000 4 6 3.5038 0.9819 -0.0005 5 6 4.4834 2.1272 -0.0012 6 7 4.8024 2.4996 1.3836 7 6 5.5280 1.4194 2.0653 8 6 5.5378 1.6797 3.5496 9 1 5.0531 2.5593 3.9469 10 6 6.1656 0.7949 4.4006 11 7 6.1745 1.0223 5.6959 12 14 7.0045 -0.7260 3.7135 13 1 8.4208 -0.4103 3.3980 14 1 6.9529 -1.8170 4.7197 15 1 6.3068 -1.1601 2.4765 16 6 5.5631 3.7554 1.4291 17 6 5.6596 4.2327 2.8553 18 6 6.7730 3.9122 3.6092 19 6 6.8539 4.3601 4.9186 20 6 5.8026 5.1084 5.4264 21 6 4.7217 5.3897 4.6127 22 7 4.6807 4.9509 3.3697 23 16 3.9332 -0.6731 -0.0077 24 6 2.2300 -1.1239 -0.0005 25 6 1.6846 -2.5288 -0.0006 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8903 0.5135 28 1 -0.3635 0.8897 0.5142 29 1 4.0430 2.9817 -0.5149 30 1 5.3956 1.8248 -0.5154 31 1 5.0344 0.4681 1.8665 32 1 6.5529 1.3810 1.6965 33 1 6.6159 0.3996 6.2946 34 1 5.0561 4.5094 0.8271 35 1 6.5648 3.5879 1.0335 36 1 7.5712 3.3230 3.1824 37 1 7.7135 4.1282 5.5301 38 1 5.8304 5.4706 6.4434 39 1 3.9008 5.9754 4.9993 40 1 1.5529 -2.8674 -1.0283 41 1 2.3831 -3.1897 0.5129 42 1 0.7238 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088603570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:34 Heat of formation + Delta-G solvation = 98.330778 kcal Electronic energy + Delta-G solvation = -24474.398370 eV Core-core repulsion = 21160.955120 eV Total energy + Delta-G solvation = -3313.443250 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.70336 -39.36737 -36.83690 -33.33040 -32.56836 -31.42773 -30.94479 -29.65244 -28.53061 -27.45346 -24.95720 -24.11208 -22.51582 -22.46401 -21.28684 -20.09903 -18.40406 -17.64956 -17.04410 -15.98346 -15.49338 -15.25752 -15.03356 -14.56746 -14.45419 -14.31563 -13.56786 -13.42750 -13.06077 -12.97751 -12.94724 -12.88465 -12.50136 -12.30024 -12.18109 -12.06183 -11.96304 -11.88231 -11.52300 -11.31416 -10.86013 -10.79328 -10.59025 -10.32843 -9.92607 -9.46177 -9.22869 -8.89713 -8.74636 -8.56898 -8.45902 -8.26534 -7.66552 -7.53470 -6.08949 -3.99983 0.99084 1.65819 2.07181 2.13239 2.41324 3.08902 3.20016 3.29805 3.32954 4.31976 4.35783 4.57894 5.04306 5.06894 5.17893 5.18804 5.23208 5.25648 5.43681 5.49085 5.53022 5.68755 5.69362 5.76408 5.80653 5.86954 5.94468 5.95988 6.01405 6.10698 6.15388 6.31777 6.53884 6.58926 6.63968 6.68963 6.77616 7.12438 7.25275 7.49043 7.70114 7.75804 7.85314 8.13326 8.57192 9.00312 9.04734 9.49471 11.00381 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.005193 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.581242 B = 5390.958388 C = 6482.525109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.061 3.939 3 N -0.456 5.456 4 C 0.080 3.920 5 C 0.129 3.871 6 N -0.512 5.512 7 C 0.147 3.853 8 C -0.499 4.499 9 H 0.098 0.902 10 C 0.074 3.926 11 N -0.883 5.883 12 Si 0.855 3.145 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.262 1.262 16 C 0.122 3.878 17 C 0.150 3.850 18 C -0.081 4.081 19 C -0.077 4.077 20 C -0.167 4.167 21 C 0.067 3.933 22 N -0.478 5.478 23 S 0.114 5.886 24 C -0.241 4.241 25 C -0.070 4.070 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.034 0.966 32 H -0.014 1.014 33 H 0.262 0.738 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 -0.865 -10.467 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 N -0.171 5.171 4 C -0.199 4.199 5 C -0.003 4.003 6 N -0.237 5.237 7 C 0.021 3.979 8 C -0.536 4.536 9 H 0.116 0.884 10 C -0.129 4.129 11 N -0.520 5.520 12 Si 0.683 3.317 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.186 1.186 16 C -0.006 4.006 17 C 0.010 3.990 18 C -0.101 4.101 19 C -0.103 4.103 20 C -0.187 4.187 21 C -0.088 4.088 22 N -0.188 5.188 23 S 0.370 5.630 24 C -0.362 4.362 25 C -0.129 4.129 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.004 0.996 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.299 -0.670 -10.566 11.089 hybrid contribution 1.121 -1.595 0.322 1.976 sum -2.179 -2.264 -10.243 10.715 Atomic orbital electron populations 1.20309 0.87609 1.03171 1.02274 1.20116 0.97925 0.86361 1.02722 1.66051 1.04498 1.31046 1.15460 1.26685 0.93949 0.97087 1.02156 1.20588 0.93650 0.93634 0.92411 1.61876 1.46908 1.03872 1.11022 1.20529 0.90716 0.90401 0.96258 1.21394 1.33731 1.10219 0.88292 0.88381 1.24815 0.96338 0.97022 0.94715 1.69889 1.43380 1.36645 1.02134 0.87142 0.80398 0.84430 0.79779 1.20350 1.21181 1.18612 1.20701 0.95793 0.91553 0.92600 1.20406 0.89489 0.93488 0.95617 1.21477 0.98818 0.95064 0.94768 1.21078 0.98535 0.95824 0.94890 1.21788 0.95838 1.01144 0.99969 1.22233 0.97044 0.99441 0.90111 1.67269 1.26766 1.10908 1.13806 1.84065 1.06786 1.04089 1.68032 1.25638 0.95480 1.00751 1.14360 1.20174 1.01008 0.89435 1.02249 0.91113 0.91047 0.90639 0.88310 0.93492 0.94796 0.99594 0.92794 0.90337 0.94177 0.86397 0.86546 0.86664 0.84564 0.91047 0.91403 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.06 36.01 0.36 -0.56 16 2 C 0.06 1.01 6.74 -84.23 -0.57 0.44 16 3 N -0.46 -8.66 10.53 -8.06 -0.08 -8.75 16 4 C 0.08 1.49 6.21 -13.46 -0.08 1.40 16 5 C 0.13 2.24 5.54 -4.97 -0.03 2.21 16 6 N -0.51 -10.69 4.55 -238.96 -1.09 -11.78 16 7 C 0.15 3.42 3.62 -4.98 -0.02 3.40 16 8 C -0.50 -13.26 6.32 -34.44 -0.22 -13.48 16 9 H 0.10 2.87 5.17 -52.48 -0.27 2.60 16 10 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 11 N -0.88 -25.21 13.96 55.43 0.77 -24.44 16 12 Si 0.86 20.46 27.47 -169.99 -4.67 15.79 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 16 C 0.12 2.30 5.28 -4.97 -0.03 2.27 16 17 C 0.15 3.17 4.01 -82.58 -0.33 2.84 16 18 C -0.08 -1.70 6.30 -39.44 -0.25 -1.95 16 19 C -0.08 -1.58 10.11 -39.28 -0.40 -1.97 16 20 C -0.17 -3.22 10.11 -39.44 -0.40 -3.62 16 21 C 0.07 1.33 11.18 -17.55 -0.20 1.14 16 22 N -0.48 -10.39 10.16 -9.47 -0.10 -10.48 16 23 S 0.11 1.94 21.34 -107.50 -2.29 -0.35 16 24 C -0.24 -3.73 6.59 -35.92 -0.24 -3.97 16 25 C -0.07 -0.79 10.10 36.01 0.36 -0.42 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.74 6.72 -51.92 -0.35 0.39 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.55 7.93 -51.93 -0.41 1.14 16 30 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 31 H 0.03 0.82 4.37 -51.93 -0.23 0.59 16 32 H -0.01 -0.30 7.41 -51.93 -0.38 -0.69 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.08 1.34 7.93 -51.93 -0.41 0.93 16 35 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 36 H 0.12 2.43 7.98 -52.49 -0.42 2.01 16 37 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 38 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.14 2.30 8.06 -52.49 -0.42 1.87 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.76 6.76 -51.93 -0.35 0.41 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -31.94 351.77 -10.06 -42.01 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.78 Total: 3.06 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.12 Total: -10.36 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.50 Total: -55.45 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.29 Total: -0.35 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.94 -10.06 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.338 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds