Wall clock time and date at job start Tue Mar 31 2020 11:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31781 * 122.74726 * 2 1 4 4 C 1.29021 * 117.12374 * 180.02562 * 3 2 1 5 5 C 1.50704 * 124.91804 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47259 * 90.00348 * 5 4 3 7 7 C 1.46898 * 110.99720 * 66.04641 * 6 5 4 8 8 C 1.50699 * 109.47155 * 193.95501 * 7 6 5 9 9 H 1.08004 * 119.99782 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00305 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99927 * 179.97438 * 10 8 7 12 12 Si 1.86790 * 119.99730 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47312 * 89.99882 * 12 10 8 14 14 H 1.48504 * 109.47106 * 209.99798 * 12 10 8 15 15 H 1.48503 * 109.47573 * 329.99827 * 12 10 8 16 16 C 1.46898 * 110.99845 * 190.00318 * 6 5 4 17 17 C 1.50707 * 109.46592 * 170.00327 * 16 6 5 18 18 C 1.38227 * 119.62024 * 94.97729 * 17 16 6 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 274.99481 * 17 16 6 23 23 S 1.70980 * 110.16801 * 0.23492 * 4 3 2 24 24 C 1.33639 * 122.75193 * 180.02562 * 2 1 3 25 25 C 1.50703 * 126.03349 * 359.97438 * 24 2 1 26 26 H 1.09000 * 109.47523 * 89.97744 * 1 2 3 27 27 H 1.09008 * 109.47230 * 209.97550 * 1 2 3 28 28 H 1.08999 * 109.47799 * 329.97567 * 1 2 3 29 29 H 1.09005 * 109.47002 * 330.00390 * 5 4 3 30 30 H 1.08999 * 109.47250 * 210.00922 * 5 4 3 31 31 H 1.09002 * 109.47442 * 313.95778 * 7 6 5 32 32 H 1.08997 * 109.47281 * 73.95810 * 7 6 5 33 33 H 0.97004 * 119.99712 * 179.97438 * 11 10 8 34 34 H 1.08993 * 109.47549 * 49.99892 * 16 6 5 35 35 H 1.08997 * 109.47171 * 289.99469 * 16 6 5 36 36 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 38 38 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 39 39 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 40 40 H 1.09001 * 109.46993 * 90.00526 * 25 24 2 41 41 H 1.09005 * 109.46631 * 209.99804 * 25 24 2 42 42 H 1.08993 * 109.47222 * 329.99633 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1084 0.0000 4 6 3.5038 0.9819 -0.0005 5 6 4.4834 2.1272 -0.0012 6 7 4.8024 2.4996 1.3836 7 6 5.5280 1.4194 2.0653 8 6 5.5378 1.6797 3.5496 9 1 5.0531 2.5593 3.9469 10 6 6.1656 0.7949 4.4006 11 7 6.1745 1.0223 5.6959 12 14 7.0045 -0.7260 3.7135 13 1 8.4208 -0.4103 3.3980 14 1 6.9529 -1.8170 4.7197 15 1 6.3068 -1.1601 2.4765 16 6 5.5631 3.7554 1.4291 17 6 5.6596 4.2327 2.8553 18 6 6.7730 3.9122 3.6092 19 6 6.8539 4.3601 4.9186 20 6 5.8026 5.1084 5.4264 21 6 4.7217 5.3897 4.6127 22 7 4.6807 4.9509 3.3697 23 16 3.9332 -0.6731 -0.0077 24 6 2.2300 -1.1239 -0.0005 25 6 1.6846 -2.5288 -0.0006 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8903 0.5135 28 1 -0.3635 0.8897 0.5142 29 1 4.0430 2.9817 -0.5149 30 1 5.3956 1.8248 -0.5154 31 1 5.0344 0.4681 1.8665 32 1 6.5529 1.3810 1.6965 33 1 6.6159 0.3996 6.2946 34 1 5.0561 4.5094 0.8271 35 1 6.5648 3.5879 1.0335 36 1 7.5712 3.3230 3.1824 37 1 7.7135 4.1282 5.5301 38 1 5.8304 5.4706 6.4434 39 1 3.9008 5.9754 4.9993 40 1 1.5529 -2.8674 -1.0283 41 1 2.3831 -3.1897 0.5129 42 1 0.7238 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088603570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:33 Heat of formation + Delta-G solvation = 77.356888 kcal Electronic energy + Delta-G solvation = -24475.307866 eV Core-core repulsion = 21160.955120 eV Total energy + Delta-G solvation = -3314.352746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11431 -40.79503 -38.37188 -34.79539 -34.27921 -33.00693 -32.45107 -30.78611 -30.20080 -28.87589 -26.24575 -25.52733 -24.13252 -24.06351 -22.77000 -21.68359 -19.68756 -19.07545 -18.79384 -17.51506 -17.07284 -16.73882 -16.49214 -16.36590 -15.78414 -15.63091 -15.13960 -14.80087 -14.71037 -14.33216 -14.21560 -13.99680 -13.83270 -13.77319 -13.63646 -13.52291 -13.22991 -13.18003 -12.93767 -12.70219 -12.62152 -12.19934 -12.02852 -11.95594 -11.79948 -11.38302 -10.77133 -10.55925 -10.29737 -10.07994 -10.05325 -9.52256 -9.31485 -9.07758 -8.13800 -6.07796 -0.27541 0.41509 0.56765 0.80435 0.80572 1.31207 1.36977 1.43995 1.82076 2.38517 2.96099 3.16279 3.20961 3.50903 3.69948 3.96464 4.06019 4.10822 4.17052 4.25551 4.31560 4.44096 4.53570 4.54708 4.58995 4.60082 4.67262 4.73970 4.80015 4.87188 4.95506 4.98946 5.02157 5.04887 5.06238 5.16679 5.46297 5.53018 5.61632 5.66546 5.99272 6.15253 6.26580 6.64426 6.86331 6.92806 7.42858 7.45070 8.97399 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.005193 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.581242 B = 5390.958388 C = 6482.525109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.034 3.966 3 N -0.481 5.481 4 C 0.057 3.943 5 C 0.130 3.870 6 N -0.533 5.533 7 C 0.158 3.842 8 C -0.494 4.494 9 H 0.067 0.933 10 C 0.029 3.971 11 N -0.922 5.922 12 Si 0.906 3.094 13 H -0.268 1.268 14 H -0.293 1.293 15 H -0.250 1.250 16 C 0.121 3.879 17 C 0.140 3.860 18 C -0.095 4.095 19 C -0.087 4.087 20 C -0.173 4.173 21 C 0.060 3.940 22 N -0.501 5.501 23 S 0.097 5.903 24 C -0.231 4.231 25 C -0.071 4.071 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.029 0.971 32 H -0.007 1.007 33 H 0.259 0.741 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -1.826 -11.834 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 N -0.196 5.196 4 C -0.222 4.222 5 C -0.001 4.001 6 N -0.258 5.258 7 C 0.031 3.969 8 C -0.532 4.532 9 H 0.085 0.915 10 C -0.170 4.170 11 N -0.562 5.562 12 Si 0.731 3.269 13 H -0.193 1.193 14 H -0.219 1.219 15 H -0.174 1.174 16 C -0.007 4.007 17 C 0.000 4.000 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.193 4.193 21 C -0.096 4.096 22 N -0.211 5.211 23 S 0.352 5.648 24 C -0.352 4.352 25 C -0.130 4.130 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.010 0.990 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.181 0.819 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.947 -1.617 -11.968 12.705 hybrid contribution 1.219 -1.222 0.762 1.887 sum -2.728 -2.839 -11.206 11.877 Atomic orbital electron populations 1.20418 0.85076 1.03714 1.03778 1.20729 0.99666 0.86075 1.03224 1.66078 1.05041 1.32690 1.15822 1.26833 0.94139 0.97827 1.03394 1.20670 0.94522 0.94210 0.90663 1.61715 1.47049 1.03730 1.13308 1.20282 0.91172 0.91059 0.94425 1.21482 1.32594 1.08969 0.90168 0.91455 1.25398 0.97232 0.99550 0.94851 1.70017 1.45159 1.37775 1.03290 0.86325 0.80060 0.81175 0.79328 1.19300 1.21886 1.17381 1.20803 0.97005 0.91153 0.91725 1.20755 0.89258 0.93274 0.96696 1.21552 0.99081 0.95655 0.95261 1.21337 0.99208 0.95795 0.94959 1.22109 0.95242 1.00657 1.01242 1.22773 0.97922 0.99098 0.89778 1.67320 1.27235 1.11725 1.14848 1.83995 1.08734 1.03743 1.68280 1.26160 0.94096 1.02492 1.12418 1.20379 1.01656 0.86812 1.04158 0.89073 0.88799 0.91765 0.86967 0.91288 0.95333 0.98990 0.93133 0.88693 0.92202 0.86659 0.85927 0.83923 0.81887 0.88559 0.91156 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.06 71.24 0.72 -0.89 16 2 C 0.03 1.08 6.74 41.52 0.28 1.36 16 3 N -0.48 -17.89 10.53 -179.40 -1.89 -19.78 16 4 C 0.06 2.05 6.21 88.52 0.55 2.60 16 5 C 0.13 4.37 5.54 85.56 0.47 4.84 16 6 N -0.53 -21.82 4.55 -909.94 -4.14 -25.97 16 7 C 0.16 7.21 3.62 85.56 0.31 7.51 16 8 C -0.49 -26.39 6.32 25.60 0.16 -26.23 16 9 H 0.07 4.00 5.17 -2.91 -0.02 3.99 16 10 C 0.03 1.56 5.47 84.66 0.46 2.02 16 11 N -0.92 -53.52 13.96 21.45 0.30 -53.22 16 12 Si 0.91 41.93 27.47 68.60 1.88 43.81 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 15 H -0.25 -10.99 6.54 99.48 0.65 -10.33 16 16 C 0.12 4.45 5.28 85.56 0.45 4.90 16 17 C 0.14 5.89 4.01 42.55 0.17 6.06 16 18 C -0.09 -4.03 6.30 22.36 0.14 -3.89 16 19 C -0.09 -3.57 10.11 22.47 0.23 -3.34 16 20 C -0.17 -6.57 10.11 22.36 0.23 -6.35 16 21 C 0.06 2.33 11.18 84.67 0.95 3.28 16 22 N -0.50 -21.72 10.16 -183.88 -1.87 -23.59 16 23 S 0.10 3.17 21.34 -56.49 -1.21 1.97 16 24 C -0.23 -6.66 6.59 24.64 0.16 -6.49 16 25 C -0.07 -1.37 10.10 71.24 0.72 -0.65 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.66 6.72 -2.38 -0.02 1.64 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 3.38 7.93 -2.38 -0.02 3.36 16 30 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 31 H 0.03 1.35 4.37 -2.39 -0.01 1.34 16 32 H -0.01 -0.33 7.41 -2.39 -0.02 -0.35 16 33 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.09 3.12 7.93 -2.39 -0.02 3.10 16 35 H 0.06 1.94 7.91 -2.39 -0.02 1.92 16 36 H 0.12 4.81 7.98 -2.91 -0.02 4.79 16 37 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.16 5.28 8.06 -2.91 -0.02 5.26 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.10 1.52 6.76 -2.39 -0.02 1.51 16 Total: -1.00 -69.28 351.77 0.05 -69.23 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.97 Total: 22.82 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 6.00 Total: -15.27 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -7.60 Total: -122.56 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.81 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.21 Total: 1.97 kcal Total: -69.28 0.05 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088603570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.584 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds