Wall clock time and date at job start Tue Mar 31 2020 11:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46736 * 89.99996 * 5 4 3 7 7 C 1.46900 * 111.00571 * 293.95263 * 6 5 4 8 8 C 1.50704 * 109.47090 * 69.99852 * 7 6 5 9 9 H 1.07996 * 119.99785 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00035 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99861 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00103 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47284 * 89.99495 * 12 10 8 14 14 H 1.48505 * 109.47202 * 209.99687 * 12 10 8 15 15 H 1.48501 * 109.46928 * 329.99923 * 12 10 8 16 16 C 1.46901 * 110.99984 * 169.99862 * 6 5 4 17 17 C 1.50703 * 109.47543 * 189.99712 * 16 6 5 18 18 C 1.38671 * 120.42272 * 269.72361 * 17 16 6 19 19 C 1.38626 * 118.42142 * 179.77698 * 18 17 16 20 20 C 1.38225 * 119.15736 * 0.51782 * 19 18 17 21 21 N 1.31851 * 120.76807 * 359.72323 * 20 19 18 22 22 C 1.31890 * 121.72729 * 359.97438 * 21 20 19 23 23 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 24 24 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 25 25 C 1.50700 * 126.03597 * 0.25055 * 24 2 1 26 26 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 27 27 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 28 28 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 29 29 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 30 30 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 31 31 H 1.08996 * 109.47984 * 190.00290 * 7 6 5 32 32 H 1.09007 * 109.46547 * 310.00371 * 7 6 5 33 33 H 0.97002 * 119.99536 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47285 * 310.00206 * 16 6 5 35 35 H 1.09006 * 109.46907 * 69.99982 * 16 6 5 36 36 H 1.08004 * 120.78693 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.42013 * 180.21895 * 19 18 17 38 38 H 1.08001 * 119.61998 * 179.74400 * 20 19 18 39 39 H 1.07991 * 119.61962 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47176 * 90.00027 * 25 24 2 41 41 H 1.09000 * 109.46916 * 209.99905 * 25 24 2 42 42 H 1.08999 * 109.47044 * 329.99869 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 7 4.7962 2.5034 1.3909 7 6 3.6140 3.0544 2.0667 8 6 2.6113 1.9542 2.3017 9 1 2.8306 0.9464 1.9816 10 6 1.4141 2.2343 2.9255 11 7 0.5393 1.2740 3.1311 12 14 1.0345 3.9776 3.4787 13 1 0.3486 4.7068 2.3817 14 1 0.1529 3.9371 4.6731 15 1 2.3001 4.6750 3.8209 16 6 5.9187 3.4498 1.4388 17 6 6.3696 3.6228 2.8663 18 6 5.8145 4.6128 3.6630 19 6 6.2567 4.7320 4.9714 20 6 7.2370 3.8731 5.4319 21 7 7.7460 2.9463 4.6443 22 6 7.3453 2.8001 3.3963 23 16 3.9332 -0.6730 0.0121 24 6 2.2300 -1.1239 0.0058 25 6 1.6847 -2.5288 0.0078 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5135 29 1 5.3979 1.8233 -0.5034 30 1 4.0453 2.9803 -0.5122 31 1 3.9101 3.4865 3.0226 32 1 3.1657 3.8272 1.4420 33 1 -0.3032 1.4712 3.5696 34 1 6.7447 3.0644 0.8410 35 1 5.5995 4.4125 1.0394 36 1 5.0529 5.2727 3.2745 37 1 5.8439 5.4894 5.6213 38 1 7.5899 3.9621 6.4487 39 1 7.7852 2.0291 2.7813 40 1 1.5570 -2.8705 -1.0194 41 1 2.3811 -3.1881 0.5260 42 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088604231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:37 Heat of formation + Delta-G solvation = 106.650416 kcal Electronic energy + Delta-G solvation = -24657.152173 eV Core-core repulsion = 21344.069690 eV Total energy + Delta-G solvation = -3313.082483 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.98135 -39.16558 -36.91854 -33.11640 -32.40338 -31.98691 -31.26827 -29.06486 -28.35572 -27.34796 -24.63707 -23.85786 -23.33652 -22.13729 -21.45418 -20.06631 -17.98013 -17.19757 -16.89190 -16.80413 -16.06797 -15.27055 -14.95747 -14.51373 -14.24750 -14.05595 -13.51808 -13.38821 -13.22934 -12.85722 -12.72555 -12.61097 -12.50771 -12.41405 -12.19850 -11.87278 -11.72557 -11.52481 -11.39778 -11.16139 -11.04238 -10.65283 -10.30553 -10.26488 -9.81181 -9.50867 -9.25346 -9.04608 -8.74026 -8.54352 -8.47234 -8.05215 -7.62496 -7.53557 -5.90763 -3.79334 1.34982 1.53943 1.67402 2.28359 2.67536 3.30554 3.35887 3.38549 3.82067 4.07734 4.50292 4.67563 4.80487 5.00986 5.04067 5.13884 5.26156 5.28929 5.41196 5.54716 5.59816 5.64586 5.71101 5.74934 5.90614 5.93695 5.97624 6.02722 6.05529 6.18956 6.32612 6.35409 6.35606 6.53498 6.71019 6.74735 6.86695 6.94411 6.95559 7.28560 7.55481 7.73966 7.92581 8.21601 8.70062 8.90873 9.12454 9.69754 11.20556 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.005486 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.568442 B = 5102.339323 C = 6383.915402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.101 3.899 3 N -0.402 5.402 4 C 0.078 3.922 5 C 0.145 3.855 6 N -0.520 5.520 7 C 0.158 3.842 8 C -0.480 4.480 9 H 0.088 0.912 10 C 0.077 3.923 11 N -0.891 5.891 12 Si 0.861 3.139 13 H -0.281 1.281 14 H -0.290 1.290 15 H -0.273 1.273 16 C 0.095 3.905 17 C -0.113 4.113 18 C -0.063 4.063 19 C -0.175 4.175 20 C 0.090 3.910 21 N -0.490 5.490 22 C 0.117 3.883 23 S 0.062 5.938 24 C -0.245 4.245 25 C -0.063 4.063 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.031 0.969 32 H -0.014 1.014 33 H 0.257 0.743 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 0.991 -5.297 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 N -0.115 5.115 4 C -0.201 4.201 5 C 0.014 3.986 6 N -0.245 5.245 7 C 0.032 3.968 8 C -0.519 4.519 9 H 0.105 0.895 10 C -0.124 4.124 11 N -0.531 5.531 12 Si 0.690 3.310 13 H -0.207 1.207 14 H -0.217 1.217 15 H -0.198 1.198 16 C -0.034 4.034 17 C -0.115 4.115 18 C -0.089 4.089 19 C -0.195 4.195 20 C -0.067 4.067 21 N -0.198 5.198 22 C -0.040 4.040 23 S 0.317 5.683 24 C -0.365 4.365 25 C -0.122 4.122 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.003 0.997 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.405 -0.025 -4.659 10.495 hybrid contribution -2.350 2.388 0.082 3.351 sum 7.055 2.363 -4.577 8.735 Atomic orbital electron populations 1.20186 0.88336 1.03941 1.00002 1.19865 0.97566 0.86008 0.99652 1.66156 1.03966 1.30332 1.11051 1.25931 0.93653 0.95789 1.04720 1.20329 0.94468 0.93335 0.90471 1.62095 1.07867 1.40938 1.13618 1.20379 0.87336 0.95686 0.93403 1.21156 0.98647 0.96075 1.36071 0.89462 1.24676 0.96291 0.95555 0.95831 1.69872 1.08308 1.31279 1.43662 0.87095 0.78301 0.87258 0.78350 1.20674 1.21660 1.19810 1.20936 0.95095 0.95425 0.91907 1.20712 0.97195 0.96131 0.97466 1.21527 0.96770 0.96869 0.93749 1.22052 0.99280 1.01640 0.96560 1.22629 0.93701 0.91210 0.99178 1.67658 1.27484 1.19543 1.05153 1.22558 0.93725 0.96409 0.91312 1.83319 1.08008 1.05528 1.71435 1.25323 0.94594 1.00303 1.16299 1.20069 1.00876 0.89970 1.01291 0.92906 0.91738 0.89850 0.90378 0.92810 0.95118 0.99678 0.93306 0.90193 0.94376 0.85367 0.85278 0.83280 0.82919 0.91941 0.92116 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.06 36.01 0.36 -0.91 16 2 C 0.10 2.17 6.24 -84.22 -0.53 1.64 16 3 N -0.40 -9.21 7.91 -8.06 -0.06 -9.27 16 4 C 0.08 1.61 4.46 -13.45 -0.06 1.55 16 5 C 0.15 2.60 5.54 -4.97 -0.03 2.57 16 6 N -0.52 -10.09 4.55 -238.96 -1.09 -11.17 16 7 C 0.16 3.67 3.62 -4.97 -0.02 3.65 16 8 C -0.48 -12.97 6.84 -34.44 -0.24 -13.20 16 9 H 0.09 2.52 4.78 -52.49 -0.25 2.27 16 10 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 11 N -0.89 -25.78 13.96 55.43 0.77 -25.00 16 12 Si 0.86 21.48 27.47 -169.99 -4.67 16.81 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 16 C 0.09 1.45 5.14 -4.97 -0.03 1.43 16 17 C -0.11 -1.80 4.92 -104.48 -0.51 -2.32 16 18 C -0.06 -1.00 8.02 -39.28 -0.32 -1.31 16 19 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 20 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 21 N -0.49 -7.95 10.36 -13.25 -0.14 -8.08 16 22 C 0.12 1.84 10.86 -17.55 -0.19 1.65 16 23 S 0.06 1.15 22.98 -107.50 -2.47 -1.32 16 24 C -0.24 -4.72 6.59 -35.92 -0.24 -4.95 16 25 C -0.06 -0.95 10.10 36.01 0.36 -0.59 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.18 6.71 -51.92 -0.35 0.83 16 28 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.05 0.96 8.01 -51.93 -0.42 0.55 16 31 H 0.03 0.74 4.35 -51.93 -0.23 0.51 16 32 H -0.01 -0.35 7.41 -51.93 -0.38 -0.73 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 35 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.13 2.00 7.82 -52.48 -0.41 1.59 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.12 6.75 -51.93 -0.35 0.77 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -31.96 351.94 -10.22 -42.18 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.75 Total: 1.12 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.12 Total: -10.55 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.52 Total: -53.53 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.47 Total: -1.32 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.96 -10.22 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088604231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.833 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds