Wall clock time and date at job start Tue Mar 31 2020 11:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46736 * 89.99996 * 5 4 3 7 7 C 1.46900 * 111.00571 * 293.95263 * 6 5 4 8 8 C 1.50704 * 109.47090 * 69.99852 * 7 6 5 9 9 H 1.07996 * 119.99785 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00035 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99861 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00103 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47284 * 89.99495 * 12 10 8 14 14 H 1.48505 * 109.47202 * 209.99687 * 12 10 8 15 15 H 1.48501 * 109.46928 * 329.99923 * 12 10 8 16 16 C 1.46901 * 110.99984 * 169.99862 * 6 5 4 17 17 C 1.50703 * 109.47543 * 189.99712 * 16 6 5 18 18 C 1.38671 * 120.42272 * 269.72361 * 17 16 6 19 19 C 1.38626 * 118.42142 * 179.77698 * 18 17 16 20 20 C 1.38225 * 119.15736 * 0.51782 * 19 18 17 21 21 N 1.31851 * 120.76807 * 359.72323 * 20 19 18 22 22 C 1.31890 * 121.72729 * 359.97438 * 21 20 19 23 23 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 24 24 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 25 25 C 1.50700 * 126.03597 * 0.25055 * 24 2 1 26 26 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 27 27 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 28 28 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 29 29 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 30 30 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 31 31 H 1.08996 * 109.47984 * 190.00290 * 7 6 5 32 32 H 1.09007 * 109.46547 * 310.00371 * 7 6 5 33 33 H 0.97002 * 119.99536 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47285 * 310.00206 * 16 6 5 35 35 H 1.09006 * 109.46907 * 69.99982 * 16 6 5 36 36 H 1.08004 * 120.78693 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.42013 * 180.21895 * 19 18 17 38 38 H 1.08001 * 119.61998 * 179.74400 * 20 19 18 39 39 H 1.07991 * 119.61962 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47176 * 90.00027 * 25 24 2 41 41 H 1.09000 * 109.46916 * 209.99905 * 25 24 2 42 42 H 1.08999 * 109.47044 * 329.99869 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 7 4.7962 2.5034 1.3909 7 6 3.6140 3.0544 2.0667 8 6 2.6113 1.9542 2.3017 9 1 2.8306 0.9464 1.9816 10 6 1.4141 2.2343 2.9255 11 7 0.5393 1.2740 3.1311 12 14 1.0345 3.9776 3.4787 13 1 0.3486 4.7068 2.3817 14 1 0.1529 3.9371 4.6731 15 1 2.3001 4.6750 3.8209 16 6 5.9187 3.4498 1.4388 17 6 6.3696 3.6228 2.8663 18 6 5.8145 4.6128 3.6630 19 6 6.2567 4.7320 4.9714 20 6 7.2370 3.8731 5.4319 21 7 7.7460 2.9463 4.6443 22 6 7.3453 2.8001 3.3963 23 16 3.9332 -0.6730 0.0121 24 6 2.2300 -1.1239 0.0058 25 6 1.6847 -2.5288 0.0078 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5135 29 1 5.3979 1.8233 -0.5034 30 1 4.0453 2.9803 -0.5122 31 1 3.9101 3.4865 3.0226 32 1 3.1657 3.8272 1.4420 33 1 -0.3032 1.4712 3.5696 34 1 6.7447 3.0644 0.8410 35 1 5.5995 4.4125 1.0394 36 1 5.0529 5.2727 3.2745 37 1 5.8439 5.4894 5.6213 38 1 7.5899 3.9621 6.4487 39 1 7.7852 2.0291 2.7813 40 1 1.5570 -2.8705 -1.0194 41 1 2.3811 -3.1881 0.5260 42 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088604231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:36 Heat of formation + Delta-G solvation = 86.126906 kcal Electronic energy + Delta-G solvation = -24658.042139 eV Core-core repulsion = 21344.069690 eV Total energy + Delta-G solvation = -3313.972450 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17565 -40.66595 -38.36894 -34.57037 -34.29990 -33.25338 -32.50078 -30.52192 -30.12685 -28.73052 -26.05537 -25.36302 -24.52770 -23.75420 -22.75513 -21.61178 -19.48713 -19.06706 -18.46966 -17.93917 -17.27853 -16.62046 -16.47311 -16.28664 -15.61270 -15.49531 -15.13216 -14.75686 -14.52081 -14.41302 -14.00687 -13.99040 -13.91357 -13.83746 -13.57982 -13.40190 -13.26879 -13.09274 -12.95468 -12.68871 -12.55059 -12.30807 -11.93238 -11.76466 -11.72256 -11.07640 -10.69364 -10.51269 -10.38005 -10.07154 -9.89611 -9.62756 -9.13873 -9.04013 -8.01289 -5.90991 0.09448 0.27499 0.38334 0.82799 1.15527 1.30705 1.33112 1.37866 2.29483 2.44412 2.87273 3.32141 3.41102 3.60611 3.62912 3.89611 3.95700 4.12830 4.15060 4.21588 4.29647 4.41564 4.47567 4.52168 4.60481 4.67810 4.72837 4.78829 4.81076 4.86772 4.91826 4.94392 5.10142 5.12557 5.21843 5.23203 5.36534 5.39292 5.70366 5.74919 5.83581 6.03843 6.27970 6.71065 7.01003 7.07645 7.39299 7.59439 9.11043 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.005486 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.568442 B = 5102.339323 C = 6383.915402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.066 3.934 3 N -0.443 5.443 4 C 0.059 3.941 5 C 0.143 3.857 6 N -0.530 5.530 7 C 0.170 3.830 8 C -0.472 4.472 9 H 0.066 0.934 10 C 0.027 3.973 11 N -0.923 5.923 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.295 1.295 15 H -0.256 1.256 16 C 0.097 3.903 17 C -0.126 4.126 18 C -0.082 4.082 19 C -0.178 4.178 20 C 0.085 3.915 21 N -0.511 5.511 22 C 0.108 3.892 23 S 0.102 5.898 24 C -0.250 4.250 25 C -0.062 4.062 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.028 0.972 32 H -0.026 1.026 33 H 0.252 0.748 34 H 0.114 0.886 35 H 0.046 0.954 36 H 0.126 0.874 37 H 0.154 0.846 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.979 0.997 -5.607 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.065 4.065 3 N -0.156 5.156 4 C -0.220 4.220 5 C 0.012 3.988 6 N -0.255 5.255 7 C 0.043 3.957 8 C -0.511 4.511 9 H 0.084 0.916 10 C -0.170 4.170 11 N -0.565 5.565 12 Si 0.736 3.264 13 H -0.212 1.212 14 H -0.222 1.222 15 H -0.180 1.180 16 C -0.031 4.031 17 C -0.128 4.128 18 C -0.108 4.108 19 C -0.197 4.197 20 C -0.072 4.072 21 N -0.219 5.219 22 C -0.049 4.049 23 S 0.357 5.643 24 C -0.371 4.371 25 C -0.121 4.121 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.069 0.931 31 H 0.046 0.954 32 H -0.008 1.008 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.065 0.935 36 H 0.144 0.856 37 H 0.172 0.828 38 H 0.196 0.804 39 H 0.186 0.814 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.360 -0.001 -4.974 12.401 hybrid contribution -2.860 2.314 0.149 3.682 sum 8.500 2.313 -4.825 10.044 Atomic orbital electron populations 1.20101 0.88000 1.02292 1.01122 1.20129 0.98257 0.86638 1.01519 1.66120 1.05302 1.31736 1.12486 1.26442 0.93638 0.97674 1.04288 1.20530 0.95646 0.92633 0.89946 1.61951 1.07154 1.42037 1.14350 1.20063 0.88124 0.93995 0.93482 1.21370 0.99179 0.96231 1.34333 0.91631 1.25270 0.96656 0.98298 0.96800 1.70002 1.08567 1.32725 1.45250 0.86324 0.78523 0.84102 0.77443 1.21219 1.22188 1.17978 1.21056 0.94440 0.95208 0.92366 1.20826 0.97624 0.96502 0.97873 1.21727 0.97150 0.97250 0.94712 1.22368 0.98979 1.02042 0.96325 1.23165 0.93289 0.90438 1.00266 1.67700 1.28215 1.20413 1.05611 1.22844 0.93783 0.96716 0.91534 1.83016 1.07070 1.03769 1.70420 1.25872 0.95215 1.01586 1.14438 1.20202 1.00817 0.87848 1.03277 0.90380 0.91068 0.93625 0.86403 0.93099 0.95444 1.00839 0.93926 0.86795 0.93545 0.85623 0.82835 0.80359 0.81416 0.89063 0.91034 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.23 10.06 71.24 0.72 -1.52 16 2 C 0.07 2.86 6.24 41.52 0.26 3.12 16 3 N -0.44 -20.48 7.91 -179.40 -1.42 -21.90 16 4 C 0.06 2.36 4.46 88.52 0.40 2.75 16 5 C 0.14 4.88 5.54 85.56 0.47 5.35 16 6 N -0.53 -19.66 4.55 -909.92 -4.14 -23.81 16 7 C 0.17 7.81 3.62 85.56 0.31 8.12 16 8 C -0.47 -25.68 6.84 25.60 0.18 -25.50 16 9 H 0.07 3.83 4.78 -2.91 -0.01 3.82 16 10 C 0.03 1.53 5.47 84.65 0.46 2.00 16 11 N -0.92 -55.00 13.96 21.45 0.30 -54.70 16 12 Si 0.91 44.81 27.47 68.60 1.88 46.69 16 13 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 15 H -0.26 -11.73 6.54 99.48 0.65 -11.07 16 16 C 0.10 2.73 5.14 85.56 0.44 3.17 16 17 C -0.13 -3.78 4.92 -19.77 -0.10 -3.88 16 18 C -0.08 -2.47 8.02 22.47 0.18 -2.29 16 19 C -0.18 -4.71 10.11 22.36 0.23 -4.49 16 20 C 0.09 2.26 11.18 84.69 0.95 3.20 16 21 N -0.51 -15.57 10.36 -195.85 -2.03 -17.60 16 22 C 0.11 3.18 10.86 84.67 0.92 4.10 16 23 S 0.10 3.61 22.98 -56.49 -1.30 2.31 16 24 C -0.25 -9.43 6.59 24.64 0.16 -9.27 16 25 C -0.06 -1.78 10.10 71.24 0.72 -1.06 16 26 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.07 2.65 6.71 -2.38 -0.02 2.63 16 28 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.12 3.00 7.93 -2.39 -0.02 2.98 16 30 H 0.05 1.76 8.01 -2.39 -0.02 1.74 16 31 H 0.03 1.29 4.35 -2.39 -0.01 1.28 16 32 H -0.03 -1.24 7.41 -2.38 -0.02 -1.26 16 33 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.11 2.42 7.88 -2.39 -0.02 2.40 16 35 H 0.05 1.25 8.07 -2.38 -0.02 1.23 16 36 H 0.13 3.77 7.82 -2.91 -0.02 3.75 16 37 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.17 4.21 8.06 -2.92 -0.02 4.19 16 40 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.12 6.75 -2.39 -0.02 2.10 16 Total: -1.00 -70.36 351.94 0.56 -69.80 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.97 Total: 15.39 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 6.29 Total: -16.19 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -7.29 Total: -118.00 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.30 Total: 2.31 kcal Total: -70.36 0.56 -69.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088604231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.926 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds