Wall clock time and date at job start Tue Mar 31 2020 11:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47236 * 240.00025 * 2 1 3 5 5 C 1.50702 * 109.46956 * 59.99854 * 4 2 1 6 6 H 1.07995 * 120.00033 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99581 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00690 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99794 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46851 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47229 * 120.00052 * 9 7 5 12 12 H 1.48495 * 109.46937 * 240.00232 * 9 7 5 13 13 C 1.52999 * 109.47422 * 119.99813 * 2 1 3 14 14 N 1.46499 * 109.47127 * 300.00129 * 13 2 1 15 15 C 1.40114 * 120.00106 * 179.97438 * 14 13 2 16 16 C 1.38693 * 120.06083 * 0.02562 * 15 14 13 17 17 C 1.38243 * 120.00442 * 179.97438 * 16 15 14 18 18 C 1.38450 * 120.12945 * 359.97438 * 17 16 15 19 19 F 1.35102 * 119.93371 * 180.02562 * 18 17 16 20 20 C 1.38456 * 120.12858 * 359.76333 * 18 17 16 21 21 C 1.38512 * 119.99764 * 0.51145 * 20 18 17 22 22 O 1.36001 * 120.06693 * 179.74289 * 21 20 18 23 23 C 1.42903 * 117.00304 * 359.72839 * 22 21 20 24 24 F 1.39904 * 109.46926 * 59.99670 * 23 22 21 25 25 F 1.39901 * 109.46899 * 300.00213 * 23 22 21 26 26 H 1.08998 * 109.47120 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47496 * 60.00039 * 1 2 3 28 28 H 1.09001 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47199 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46707 * 300.00018 * 3 2 1 31 31 H 1.08998 * 109.46809 * 60.00160 * 3 2 1 32 32 H 1.08997 * 109.47271 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47339 * 300.00035 * 4 2 1 34 34 H 0.96993 * 120.00417 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47365 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.46930 * 59.99815 * 13 2 1 37 37 H 0.97001 * 120.00070 * 0.02562 * 14 13 2 38 38 H 1.08001 * 120.00507 * 0.02562 * 16 15 14 39 39 H 1.07991 * 119.93700 * 179.97438 * 17 16 15 40 40 H 1.08005 * 120.00149 * 180.25402 * 20 18 17 41 41 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4822 -3.7319 8 7 2.6256 -1.5521 -3.8527 9 14 1.2482 0.3988 -5.2572 10 1 0.4236 1.5657 -4.8530 11 1 2.4034 0.8646 -6.0656 12 1 0.4225 -0.5340 -6.0654 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8898 -0.5095 3.7180 16 6 2.6871 -1.6370 3.8467 17 6 3.0205 -2.1082 5.1029 18 6 2.5602 -1.4564 6.2343 19 9 2.8888 -1.9201 7.4600 20 6 1.7684 -0.3272 6.1121 21 6 1.4265 0.1462 4.8561 22 8 0.6445 1.2522 4.7345 23 6 0.2057 1.8730 5.9446 24 9 1.3178 2.2789 6.6902 25 9 -0.5476 0.9600 6.6904 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8599 -1.8834 -4.7336 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7489 1.2493 37 1 0.9937 0.7578 2.3564 38 1 3.0484 -2.1465 2.9656 39 1 3.6410 -2.9865 5.2019 40 1 1.4139 0.1820 6.9962 41 1 -0.4079 2.7416 5.7057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092174747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:44 Heat of formation + Delta-G solvation = -178.673197 kcal Electronic energy + Delta-G solvation = -26812.338668 eV Core-core repulsion = 22469.981262 eV Total energy + Delta-G solvation = -4342.357406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.60328 -48.75750 -47.59003 -40.24648 -38.05492 -37.08778 -34.20439 -32.28374 -30.62636 -28.92615 -27.02740 -26.53212 -26.30370 -25.86092 -23.26669 -22.60149 -21.68863 -19.40696 -18.76308 -18.16192 -18.13189 -16.93350 -16.84516 -16.47857 -16.07629 -15.62616 -15.38395 -14.77022 -14.65172 -14.42740 -14.40667 -14.05009 -14.04618 -13.88048 -13.62201 -13.29924 -12.92543 -12.74307 -12.70438 -12.60780 -12.22793 -12.09247 -11.79485 -11.21937 -11.20562 -11.05797 -10.86483 -10.68626 -10.42957 -10.27137 -10.03924 -9.69689 -9.25630 -8.97046 -8.90427 -8.40768 -7.17400 -6.05003 -4.05957 1.09004 1.30089 2.31119 3.19591 3.27084 3.35504 3.37726 3.53754 3.54884 4.01201 4.32186 4.37300 4.41713 4.61093 4.89443 4.95130 5.28014 5.31013 5.41236 5.53673 5.56909 5.73173 5.90014 5.96403 6.08352 6.13446 6.19012 6.22782 6.34216 6.42240 6.59661 6.60406 6.76277 7.00380 7.03390 7.06411 7.40062 7.57253 7.69659 7.85774 7.93721 8.36135 8.98900 9.57650 11.06514 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.002938 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.960121 B = 9528.483915 C =10484.425747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.728 5.728 15 C 0.216 3.784 16 C -0.149 4.149 17 C -0.117 4.117 18 C 0.057 3.943 19 F -0.145 7.145 20 C -0.176 4.176 21 C 0.044 3.956 22 O -0.318 6.318 23 C 0.413 3.587 24 F -0.200 7.200 25 F -0.200 7.200 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.405 0.595 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 4.629 19.837 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.357 5.357 15 C 0.109 3.891 16 C -0.173 4.173 17 C -0.137 4.137 18 C 0.036 3.964 19 F -0.124 7.124 20 C -0.196 4.196 21 C -0.003 4.003 22 O -0.235 6.235 23 C 0.323 3.677 24 F -0.182 7.182 25 F -0.182 7.182 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.242 0.758 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.159 4.480 19.420 20.179 hybrid contribution -0.389 0.551 -0.371 0.770 sum -3.548 5.031 19.049 20.019 Atomic orbital electron populations 1.21748 0.95225 1.01119 1.00295 1.20863 0.95544 0.95898 0.94772 1.21749 1.00444 0.95904 1.00296 1.19098 0.96274 0.95185 0.89570 1.21220 1.31130 1.12053 0.90503 0.92209 1.25004 0.95289 0.95063 0.99097 1.69960 1.37065 1.23046 1.23378 0.86597 0.78633 0.79712 0.83428 1.19795 1.21107 1.21113 1.21688 0.98299 0.95891 0.83543 1.45035 1.56316 1.32806 1.01535 1.17282 0.94741 0.92973 0.84062 1.20441 1.02026 0.96918 0.97888 1.20894 1.01198 1.00801 0.90797 1.16995 1.02861 0.96476 0.80108 1.91457 1.91437 1.88286 1.41192 1.21106 1.02905 0.98866 0.96684 1.17861 0.99540 0.90270 0.92628 1.86554 1.65115 1.40817 1.31054 1.23321 0.80132 0.88472 0.75814 1.93098 1.56302 1.90549 1.78219 1.93098 1.76355 1.70503 1.78202 0.95122 0.91515 0.93421 0.93417 0.91522 0.95113 0.96383 0.96377 0.93077 0.92286 0.92296 0.75814 0.83778 0.84546 0.84230 0.80306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.21 7.65 -34.44 -0.26 -13.47 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.13 2.00 3.81 -4.04 -0.02 1.99 16 14 N -0.73 -10.13 5.14 -58.47 -0.30 -10.43 16 15 C 0.22 2.93 6.67 -83.51 -0.56 2.37 16 16 C -0.15 -1.88 9.31 -39.41 -0.37 -2.24 16 17 C -0.12 -1.40 10.02 -39.50 -0.40 -1.79 16 18 C 0.06 0.74 7.30 -39.42 -0.29 0.46 16 19 F -0.14 -1.93 17.26 2.25 0.04 -1.89 16 20 C -0.18 -2.27 8.23 -39.40 -0.32 -2.59 16 21 C 0.04 0.58 6.50 -39.09 -0.25 0.32 16 22 O -0.32 -3.59 9.68 -19.75 -0.19 -3.78 16 23 C 0.41 3.41 5.98 101.05 0.60 4.02 16 24 F -0.20 -1.97 15.57 2.25 0.04 -1.93 16 25 F -0.20 -1.97 15.60 2.25 0.04 -1.93 16 26 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 27 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.06 0.92 7.95 -51.93 -0.41 0.50 16 36 H 0.06 0.92 7.95 -51.93 -0.41 0.50 16 37 H 0.41 5.51 5.53 -40.82 -0.23 5.29 16 38 H 0.14 1.68 6.74 -52.49 -0.35 1.33 16 39 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.14 1.71 5.09 -52.48 -0.27 1.44 16 41 H 0.18 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -29.24 341.97 -6.11 -35.35 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.04 Total: 2.56 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.56 Total: -13.88 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.44 Total: -35.44 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.19 Total: -3.78 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.11 Total: -5.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.24 -6.11 -35.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092174747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.321 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds