Wall clock time and date at job start Tue Mar 31 2020 11:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47236 * 240.00025 * 2 1 3 5 5 C 1.50702 * 109.46956 * 59.99854 * 4 2 1 6 6 H 1.07995 * 120.00033 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99581 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00690 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99794 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46851 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47229 * 120.00052 * 9 7 5 12 12 H 1.48495 * 109.46937 * 240.00232 * 9 7 5 13 13 C 1.52999 * 109.47422 * 119.99813 * 2 1 3 14 14 N 1.46499 * 109.47127 * 300.00129 * 13 2 1 15 15 C 1.40114 * 120.00106 * 179.97438 * 14 13 2 16 16 C 1.38693 * 120.06083 * 0.02562 * 15 14 13 17 17 C 1.38243 * 120.00442 * 179.97438 * 16 15 14 18 18 C 1.38450 * 120.12945 * 359.97438 * 17 16 15 19 19 F 1.35102 * 119.93371 * 180.02562 * 18 17 16 20 20 C 1.38456 * 120.12858 * 359.76333 * 18 17 16 21 21 C 1.38512 * 119.99764 * 0.51145 * 20 18 17 22 22 O 1.36001 * 120.06693 * 179.74289 * 21 20 18 23 23 C 1.42903 * 117.00304 * 359.72839 * 22 21 20 24 24 F 1.39904 * 109.46926 * 59.99670 * 23 22 21 25 25 F 1.39901 * 109.46899 * 300.00213 * 23 22 21 26 26 H 1.08998 * 109.47120 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47496 * 60.00039 * 1 2 3 28 28 H 1.09001 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47199 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46707 * 300.00018 * 3 2 1 31 31 H 1.08998 * 109.46809 * 60.00160 * 3 2 1 32 32 H 1.08997 * 109.47271 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47339 * 300.00035 * 4 2 1 34 34 H 0.96993 * 120.00417 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47365 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.46930 * 59.99815 * 13 2 1 37 37 H 0.97001 * 120.00070 * 0.02562 * 14 13 2 38 38 H 1.08001 * 120.00507 * 0.02562 * 16 15 14 39 39 H 1.07991 * 119.93700 * 179.97438 * 17 16 15 40 40 H 1.08005 * 120.00149 * 180.25402 * 20 18 17 41 41 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4822 -3.7319 8 7 2.6256 -1.5521 -3.8527 9 14 1.2482 0.3988 -5.2572 10 1 0.4236 1.5657 -4.8530 11 1 2.4034 0.8646 -6.0656 12 1 0.4225 -0.5340 -6.0654 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8898 -0.5095 3.7180 16 6 2.6871 -1.6370 3.8467 17 6 3.0205 -2.1082 5.1029 18 6 2.5602 -1.4564 6.2343 19 9 2.8888 -1.9201 7.4600 20 6 1.7684 -0.3272 6.1121 21 6 1.4265 0.1462 4.8561 22 8 0.6445 1.2522 4.7345 23 6 0.2057 1.8730 5.9446 24 9 1.3178 2.2789 6.6902 25 9 -0.5476 0.9600 6.6904 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8599 -1.8834 -4.7336 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7489 1.2493 37 1 0.9937 0.7578 2.3564 38 1 3.0484 -2.1465 2.9656 39 1 3.6410 -2.9865 5.2019 40 1 1.4139 0.1820 6.9962 41 1 -0.4079 2.7416 5.7057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092174747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:44 Heat of formation + Delta-G solvation = -194.506296 kcal Electronic energy + Delta-G solvation = -26813.025243 eV Core-core repulsion = 22469.981262 eV Total energy + Delta-G solvation = -4343.043981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.29794 -49.78248 -48.29328 -41.20328 -39.26723 -38.17374 -35.57628 -34.13159 -31.56786 -30.15145 -28.75531 -27.94316 -27.15288 -27.04936 -24.89230 -23.61148 -22.84378 -20.32622 -19.76238 -19.32540 -18.86857 -18.33868 -17.95591 -17.74757 -17.23754 -16.63050 -16.49796 -16.26125 -15.83088 -15.62944 -15.41787 -15.13181 -14.93109 -14.71326 -14.63562 -14.59031 -14.20264 -14.11442 -13.91487 -13.83111 -13.42865 -13.15552 -13.07367 -12.79709 -12.67940 -12.48795 -12.31444 -12.24141 -12.08739 -11.89538 -11.53909 -10.95945 -10.86508 -10.81057 -10.49377 -9.85810 -8.22404 -8.12851 -6.19079 0.12385 0.29194 1.41521 1.43784 1.54268 1.58360 2.39386 2.49080 2.55546 2.56021 3.22245 3.28184 3.56813 3.67328 3.71474 3.95156 3.99915 4.06957 4.14140 4.25598 4.33300 4.60105 4.72497 4.78191 4.78973 4.93449 5.00171 5.05073 5.14450 5.16487 5.21542 5.46194 5.51301 5.52547 5.54566 5.58475 5.77536 5.84057 5.92838 6.27145 6.38458 6.79442 6.96192 7.48389 8.99434 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.002938 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.960121 B = 9528.483915 C =10484.425747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.042 3.958 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.952 3.048 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.143 3.857 14 N -0.725 5.725 15 C 0.201 3.799 16 C -0.152 4.152 17 C -0.115 4.115 18 C 0.047 3.953 19 F -0.149 7.149 20 C -0.183 4.183 21 C 0.045 3.955 22 O -0.324 6.324 23 C 0.406 3.594 24 F -0.210 7.210 25 F -0.210 7.210 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.060 0.940 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.259 0.741 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.408 0.592 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.144 0.856 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 6.021 20.766 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.778 3.222 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.019 3.981 14 N -0.355 5.355 15 C 0.096 3.904 16 C -0.175 4.175 17 C -0.134 4.134 18 C 0.026 3.974 19 F -0.128 7.128 20 C -0.203 4.203 21 C -0.003 4.003 22 O -0.242 6.242 23 C 0.317 3.683 24 F -0.192 7.192 25 F -0.192 7.192 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.245 0.755 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.161 0.839 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.154 5.890 20.380 21.617 hybrid contribution -0.080 0.112 -0.561 0.577 sum -4.233 6.002 19.820 21.137 Atomic orbital electron populations 1.21665 0.94252 1.00891 1.00950 1.20673 0.96225 0.96103 0.93488 1.21666 0.99979 0.95165 1.00950 1.18960 0.94511 0.94268 0.91849 1.21634 1.30236 1.11931 0.91356 0.91483 1.25850 0.95737 0.95856 1.02400 1.70092 1.38814 1.24806 1.23961 0.85585 0.78071 0.78849 0.79683 1.18455 1.21058 1.21069 1.21353 0.98061 0.95514 0.83184 1.44763 1.56786 1.32920 1.01067 1.17422 0.95468 0.93590 0.83954 1.20603 1.01737 0.96748 0.98413 1.21094 1.00963 1.01230 0.90124 1.17208 1.03146 0.96792 0.80283 1.91447 1.91496 1.88347 1.41462 1.21203 1.03098 0.99021 0.96939 1.17905 0.99373 0.90688 0.92285 1.86554 1.64670 1.40114 1.32869 1.24248 0.80047 0.89236 0.74746 1.93076 1.57142 1.90517 1.78488 1.93076 1.76465 1.71205 1.78472 0.92071 0.93141 0.94122 0.94117 0.93148 0.92064 0.99002 0.99000 0.93191 0.92505 0.92517 0.75487 0.83191 0.82437 0.83886 0.74992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 2 C -0.06 -2.28 0.54 -52.18 -0.03 -2.31 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -26.75 7.65 25.60 0.20 -26.55 16 6 H 0.07 3.34 5.68 -2.91 -0.02 3.32 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 8 N -0.94 -55.02 13.29 21.45 0.28 -54.74 16 9 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.14 4.31 3.81 86.38 0.33 4.63 16 14 N -0.73 -18.81 5.14 -338.90 -1.74 -20.55 16 15 C 0.20 5.13 6.67 38.18 0.25 5.39 16 16 C -0.15 -3.61 9.31 22.38 0.21 -3.40 16 17 C -0.11 -2.56 10.02 22.32 0.22 -2.33 16 18 C 0.05 1.17 7.30 22.37 0.16 1.33 16 19 F -0.15 -3.81 17.26 44.97 0.78 -3.03 16 20 C -0.18 -4.47 8.23 22.39 0.18 -4.29 16 21 C 0.04 1.10 6.50 22.59 0.15 1.24 16 22 O -0.32 -6.55 9.68 -93.57 -0.91 -7.45 16 23 C 0.41 5.65 5.98 113.37 0.68 6.33 16 24 F -0.21 -3.74 15.57 44.97 0.70 -3.04 16 25 F -0.21 -3.74 15.60 44.97 0.70 -3.04 16 26 H 0.06 1.64 6.86 -2.39 -0.02 1.62 16 27 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 31 H 0.06 1.64 6.86 -2.39 -0.02 1.63 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 36 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 37 H 0.41 10.00 5.53 -92.71 -0.51 9.49 16 38 H 0.15 3.33 6.74 -2.91 -0.02 3.32 16 39 H 0.16 2.75 8.06 -2.92 -0.02 2.72 16 40 H 0.14 3.34 5.09 -2.91 -0.01 3.32 16 41 H 0.23 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -63.53 341.97 6.50 -57.03 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.56 Total: 14.22 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.10 Total: -24.26 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.46 Total: -75.29 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.91 Total: -7.45 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 2.18 Total: -9.10 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -63.53 6.50 -57.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092174747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.478 kcal (2) G-P(sol) polarization free energy of solvation -63.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds