Wall clock time and date at job start Tue Mar 31 2020 12:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 120.00046 * 2 1 4 4 C 1.33012 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.47068 * 119.99887 * 0.02562 * 4 2 1 6 6 O 1.21639 * 120.00100 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00194 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99752 * 5.58561 * 7 5 4 9 9 C 1.50701 * 109.46878 * 270.00358 * 8 7 5 10 10 H 1.08002 * 120.00515 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99548 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00263 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 119.99902 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46818 * 89.99822 * 13 11 9 15 15 H 1.48496 * 109.47193 * 210.00083 * 13 11 9 16 16 H 1.48502 * 109.46954 * 329.99825 * 13 11 9 17 17 C 1.40006 * 120.00182 * 185.58989 * 7 5 4 18 18 C 1.38872 * 120.02124 * 236.11009 * 17 7 5 19 19 C 1.38115 * 120.03617 * 179.77202 * 18 17 7 20 20 C 1.38722 * 120.16729 * 0.24110 * 19 18 17 21 21 C 1.39005 * 119.92990 * 359.95470 * 20 19 18 22 22 C 1.38636 * 119.89278 * 0.10982 * 21 20 19 23 23 O 1.36121 * 120.77476 * 180.20583 * 21 20 19 24 24 C 1.43169 * 116.71803 * 342.70846 * 23 21 20 25 25 C 1.53476 * 108.22957 * 46.27539 * 24 23 21 26 26 O 1.36203 * 119.31964 * 179.80831 * 20 19 18 27 27 H 1.08997 * 109.47326 * 240.00139 * 1 2 3 28 28 H 1.09005 * 109.46847 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46927 * 119.99820 * 1 2 3 30 30 H 1.09003 * 109.47135 * 269.99907 * 3 2 1 31 31 H 1.08997 * 109.47582 * 29.99685 * 3 2 1 32 32 H 1.08998 * 109.47127 * 150.00081 * 3 2 1 33 33 H 1.07997 * 120.00464 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47313 * 30.00210 * 8 7 5 35 35 H 1.09001 * 109.47006 * 150.00430 * 8 7 5 36 36 H 0.96999 * 120.00190 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.97642 * 0.04462 * 18 17 7 38 38 H 1.08000 * 119.92020 * 180.26154 * 19 18 17 39 39 H 1.07992 * 119.99547 * 179.87325 * 22 21 20 40 40 H 1.08998 * 109.71006 * 286.59480 * 24 23 21 41 41 H 1.08998 * 109.71402 * 165.96136 * 24 23 21 42 42 H 1.08998 * 109.70562 * 180.54154 * 25 24 23 43 43 H 1.09003 * 109.74017 * 59.94203 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1519 0.0005 5 6 1.4368 -2.4256 0.0005 6 8 0.2204 -2.4256 0.0005 7 7 2.1106 -3.5928 0.0016 8 6 3.5703 -3.5957 0.1262 9 6 4.1916 -3.5281 -1.2451 10 1 3.5622 -3.4875 -2.1218 11 6 5.5637 -3.5192 -1.3805 12 7 6.3302 -3.5702 -0.3131 13 14 6.3340 -3.4362 -3.0804 14 1 6.5356 -2.0157 -3.4635 15 1 7.6439 -4.1355 -3.0650 16 1 5.4347 -4.0914 -4.0639 17 6 1.4157 -4.8024 -0.1165 18 6 1.5650 -5.7869 0.8514 19 6 0.8760 -6.9785 0.7377 20 6 0.0371 -7.1980 -0.3451 21 6 -0.1114 -6.2161 -1.3177 22 6 0.5814 -5.0207 -1.2040 23 8 -0.9331 -6.4117 -2.3851 24 6 -1.3194 -7.7624 -2.6611 25 6 -1.7446 -8.4194 -1.3409 26 8 -0.6311 -8.3810 -0.4421 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.4422 1.6197 -1.0277 31 1 1.6715 2.0648 0.5138 32 1 3.2129 1.1747 0.5138 33 1 3.2521 -1.1520 0.0001 34 1 3.8868 -2.7323 0.7114 35 1 3.8905 -4.5102 0.6255 36 1 7.2955 -3.5636 -0.4083 37 1 2.2170 -5.6189 1.6959 38 1 0.9903 -7.7412 1.4938 39 1 0.4689 -4.2575 -1.9598 40 1 -0.4764 -8.3060 -3.0875 41 1 -2.1547 -7.7701 -3.3614 42 1 -2.0352 -9.4542 -1.5222 43 1 -2.5834 -7.8722 -0.9107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103963140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:14 Heat of formation + Delta-G solvation = -61.491536 kcal Electronic energy + Delta-G solvation = -26807.928898 eV Core-core repulsion = 23012.509611 eV Total energy + Delta-G solvation = -3795.419288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02076 -39.65483 -37.40429 -37.02966 -35.14360 -34.61610 -32.59362 -30.82275 -30.17466 -28.40342 -27.48407 -27.40747 -26.65537 -24.48210 -23.20891 -22.51256 -21.32883 -19.70385 -18.39178 -17.53637 -17.18439 -17.05759 -16.43709 -16.24267 -15.54968 -15.13523 -14.80846 -14.53039 -14.38192 -14.22735 -13.78273 -13.77130 -13.55746 -13.47344 -12.97760 -12.86144 -12.42017 -12.34497 -11.99498 -11.91391 -11.80805 -11.63239 -11.30434 -11.10890 -11.01310 -10.99345 -10.87187 -10.62951 -10.32262 -10.19542 -9.83450 -8.97457 -8.67749 -8.55893 -8.48765 -8.08115 -7.26669 -6.19243 -4.26276 1.57374 1.69019 1.99148 3.16493 3.22869 3.30003 3.31225 3.35247 3.81885 3.93058 4.16879 4.29507 4.35432 4.80298 4.87233 4.89266 5.13963 5.16037 5.21466 5.26560 5.42965 5.56120 5.60190 5.66965 5.75680 5.77481 5.87248 6.02233 6.15947 6.18225 6.20392 6.22030 6.45223 6.54443 6.66484 6.82135 6.91694 6.98221 7.00374 7.08857 7.17503 7.56554 7.70545 7.77101 8.01638 8.20480 8.77273 8.96605 9.40921 10.87268 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.004956 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.327080 B = 5648.067367 C = 7337.423259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.065 4.065 3 C -0.119 4.119 4 C -0.201 4.201 5 C 0.549 3.451 6 O -0.555 6.555 7 N -0.553 5.553 8 C 0.238 3.762 9 C -0.535 4.535 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.891 5.891 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.189 3.811 18 C -0.124 4.124 19 C -0.100 4.100 20 C 0.026 3.974 21 C 0.061 3.939 22 C -0.105 4.105 23 O -0.308 6.308 24 C 0.021 3.979 25 C 0.022 3.978 26 O -0.310 6.310 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 -2.657 0.081 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.067 4.067 3 C -0.176 4.176 4 C -0.222 4.222 5 C 0.342 3.658 6 O -0.436 6.436 7 N -0.278 5.278 8 C 0.120 3.880 9 C -0.573 4.573 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.530 5.530 13 Si 0.724 3.276 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.198 1.198 17 C 0.096 3.904 18 C -0.144 4.144 19 C -0.119 4.119 20 C -0.018 4.018 21 C 0.016 3.984 22 C -0.126 4.126 23 O -0.223 6.223 24 C -0.055 4.055 25 C -0.054 4.054 26 O -0.226 6.226 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.093 0.907 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.067 -2.664 0.123 12.358 hybrid contribution 0.704 -0.223 -1.186 1.397 sum -11.363 -2.886 -1.063 11.772 Atomic orbital electron populations 1.20948 0.91396 1.00034 1.04009 1.22428 0.96370 0.94490 0.93365 1.20920 1.00008 0.94189 1.02481 1.22667 1.01511 0.91064 1.06932 1.18627 0.86696 0.84506 0.75927 1.90718 1.13909 1.87869 1.51119 1.45880 1.09883 1.02448 1.69608 1.19631 0.71231 0.99167 0.98016 1.21449 0.91564 1.51802 0.92517 0.92023 1.24902 0.96935 0.94699 0.97102 1.69915 1.04930 1.49699 1.28433 0.86514 0.78655 0.78308 0.84171 1.20419 1.21034 1.19780 1.17198 0.93397 0.87350 0.92432 1.20910 1.01359 0.93135 0.99022 1.20134 0.97876 0.97699 0.96167 1.18744 0.99752 0.86934 0.96405 1.18557 0.96215 0.95679 0.87913 1.20315 0.97822 0.95881 0.98559 1.86308 1.63057 1.27389 1.45515 1.23569 1.01861 0.82596 0.97459 1.23534 0.88455 1.03446 0.89949 1.86279 1.43308 1.30488 1.62486 0.90448 0.93771 0.90469 0.90863 0.91705 0.91153 0.84027 0.93645 0.94072 0.92476 0.84760 0.84840 0.85092 0.90675 0.86531 0.86578 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 8.33 36.01 0.30 -1.37 16 2 C -0.06 -1.05 6.11 -101.16 -0.62 -1.67 16 3 C -0.12 -1.52 9.98 36.01 0.36 -1.16 16 4 C -0.20 -3.87 8.76 -37.82 -0.33 -4.20 16 5 C 0.55 11.77 7.36 -12.68 -0.09 11.68 16 6 O -0.55 -12.33 12.43 5.24 0.07 -12.26 16 7 N -0.55 -12.16 2.57 -116.05 -0.30 -12.46 16 8 C 0.24 5.68 4.68 -5.19 -0.02 5.65 16 9 C -0.53 -13.99 9.30 -34.44 -0.32 -14.31 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -24.31 13.29 55.43 0.74 -23.58 16 13 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C 0.19 3.97 5.18 -83.69 -0.43 3.54 16 18 C -0.12 -2.30 9.30 -39.39 -0.37 -2.67 16 19 C -0.10 -1.66 9.95 -39.45 -0.39 -2.06 16 20 C 0.03 0.45 6.50 -39.12 -0.25 0.20 16 21 C 0.06 1.14 6.49 -39.15 -0.25 0.88 16 22 C -0.11 -2.17 8.85 -39.23 -0.35 -2.52 16 23 O -0.31 -5.10 10.42 -32.91 -0.34 -5.44 16 24 C 0.02 0.24 7.26 37.40 0.27 0.51 16 25 C 0.02 0.24 7.26 37.40 0.27 0.51 16 26 O -0.31 -4.62 10.42 -33.17 -0.35 -4.97 16 27 H 0.08 1.29 7.22 -51.93 -0.37 0.92 16 28 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 29 H 0.08 1.32 7.22 -51.93 -0.37 0.95 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 32 H 0.07 0.88 8.07 -51.93 -0.42 0.47 16 33 H 0.14 2.85 6.33 -52.49 -0.33 2.52 16 34 H 0.05 1.10 6.36 -51.93 -0.33 0.77 16 35 H 0.04 1.02 7.30 -51.93 -0.38 0.64 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.13 2.31 7.78 -52.49 -0.41 1.90 16 38 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.13 2.81 8.04 -52.49 -0.42 2.39 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -30.57 359.95 -8.06 -38.63 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.95 Total: 4.29 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -2.33 Total: -5.31 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.44 Total: -36.04 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.62 Total: -22.67 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.57 -8.06 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103963140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.861 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds