Wall clock time and date at job start Tue Mar 31 2020 12:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 120.00046 * 2 1 4 4 C 1.33012 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.47068 * 119.99887 * 0.02562 * 4 2 1 6 6 O 1.21639 * 120.00100 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00194 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99752 * 5.58561 * 7 5 4 9 9 C 1.50701 * 109.46878 * 270.00358 * 8 7 5 10 10 H 1.08002 * 120.00515 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99548 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00263 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 119.99902 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46818 * 89.99822 * 13 11 9 15 15 H 1.48496 * 109.47193 * 210.00083 * 13 11 9 16 16 H 1.48502 * 109.46954 * 329.99825 * 13 11 9 17 17 C 1.40006 * 120.00182 * 185.58989 * 7 5 4 18 18 C 1.38872 * 120.02124 * 236.11009 * 17 7 5 19 19 C 1.38115 * 120.03617 * 179.77202 * 18 17 7 20 20 C 1.38722 * 120.16729 * 0.24110 * 19 18 17 21 21 C 1.39005 * 119.92990 * 359.95470 * 20 19 18 22 22 C 1.38636 * 119.89278 * 0.10982 * 21 20 19 23 23 O 1.36121 * 120.77476 * 180.20583 * 21 20 19 24 24 C 1.43169 * 116.71803 * 342.70846 * 23 21 20 25 25 C 1.53476 * 108.22957 * 46.27539 * 24 23 21 26 26 O 1.36203 * 119.31964 * 179.80831 * 20 19 18 27 27 H 1.08997 * 109.47326 * 240.00139 * 1 2 3 28 28 H 1.09005 * 109.46847 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46927 * 119.99820 * 1 2 3 30 30 H 1.09003 * 109.47135 * 269.99907 * 3 2 1 31 31 H 1.08997 * 109.47582 * 29.99685 * 3 2 1 32 32 H 1.08998 * 109.47127 * 150.00081 * 3 2 1 33 33 H 1.07997 * 120.00464 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47313 * 30.00210 * 8 7 5 35 35 H 1.09001 * 109.47006 * 150.00430 * 8 7 5 36 36 H 0.96999 * 120.00190 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.97642 * 0.04462 * 18 17 7 38 38 H 1.08000 * 119.92020 * 180.26154 * 19 18 17 39 39 H 1.07992 * 119.99547 * 179.87325 * 22 21 20 40 40 H 1.08998 * 109.71006 * 286.59480 * 24 23 21 41 41 H 1.08998 * 109.71402 * 165.96136 * 24 23 21 42 42 H 1.08998 * 109.70562 * 180.54154 * 25 24 23 43 43 H 1.09003 * 109.74017 * 59.94203 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1519 0.0005 5 6 1.4368 -2.4256 0.0005 6 8 0.2204 -2.4256 0.0005 7 7 2.1106 -3.5928 0.0016 8 6 3.5703 -3.5957 0.1262 9 6 4.1916 -3.5281 -1.2451 10 1 3.5622 -3.4875 -2.1218 11 6 5.5637 -3.5192 -1.3805 12 7 6.3302 -3.5702 -0.3131 13 14 6.3340 -3.4362 -3.0804 14 1 6.5356 -2.0157 -3.4635 15 1 7.6439 -4.1355 -3.0650 16 1 5.4347 -4.0914 -4.0639 17 6 1.4157 -4.8024 -0.1165 18 6 1.5650 -5.7869 0.8514 19 6 0.8760 -6.9785 0.7377 20 6 0.0371 -7.1980 -0.3451 21 6 -0.1114 -6.2161 -1.3177 22 6 0.5814 -5.0207 -1.2040 23 8 -0.9331 -6.4117 -2.3851 24 6 -1.3194 -7.7624 -2.6611 25 6 -1.7446 -8.4194 -1.3409 26 8 -0.6311 -8.3810 -0.4421 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.4422 1.6197 -1.0277 31 1 1.6715 2.0648 0.5138 32 1 3.2129 1.1747 0.5138 33 1 3.2521 -1.1520 0.0001 34 1 3.8868 -2.7323 0.7114 35 1 3.8905 -4.5102 0.6255 36 1 7.2955 -3.5636 -0.4083 37 1 2.2170 -5.6189 1.6959 38 1 0.9903 -7.7412 1.4938 39 1 0.4689 -4.2575 -1.9598 40 1 -0.4764 -8.3060 -3.0875 41 1 -2.1547 -7.7701 -3.3614 42 1 -2.0352 -9.4542 -1.5222 43 1 -2.5834 -7.8722 -0.9107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103963140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:13 Heat of formation + Delta-G solvation = -78.517565 kcal Electronic energy + Delta-G solvation = -26808.667202 eV Core-core repulsion = 23012.509611 eV Total energy + Delta-G solvation = -3796.157592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29232 -41.20692 -38.82907 -38.23276 -36.64152 -36.17310 -34.53636 -31.99704 -31.60762 -29.70941 -29.23942 -28.60951 -28.12113 -25.73616 -24.94166 -24.06993 -22.63355 -21.03632 -19.64031 -19.05453 -18.74310 -18.49846 -18.08432 -17.79637 -17.02123 -16.40278 -16.35871 -16.00113 -15.86129 -15.39306 -15.10162 -15.04569 -14.95125 -14.85456 -14.49236 -14.17970 -14.05417 -13.60392 -13.55114 -13.31915 -13.21889 -13.00831 -12.90147 -12.74120 -12.47754 -12.32208 -12.28938 -11.99962 -11.97610 -11.76579 -11.49691 -10.69534 -10.49959 -10.20722 -9.94442 -9.54528 -8.78909 -8.20902 -6.36328 0.11942 0.25138 0.54556 1.38758 1.40530 1.50349 1.94285 2.10825 2.31913 2.37261 2.46254 2.70367 3.07853 3.29091 3.65483 3.79568 3.96400 4.00074 4.04702 4.13379 4.20071 4.32558 4.39374 4.46424 4.58609 4.63075 4.65480 4.72354 4.79969 4.86628 4.94453 4.98821 5.05110 5.07991 5.13690 5.22290 5.35964 5.40284 5.61749 5.65540 5.68347 5.86380 6.01090 6.01824 6.39225 6.47192 6.75080 7.26639 7.37166 8.83387 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.004956 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.327080 B = 5648.067367 C = 7337.423259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.033 4.033 3 C -0.119 4.119 4 C -0.242 4.242 5 C 0.542 3.458 6 O -0.572 6.572 7 N -0.557 5.557 8 C 0.256 3.744 9 C -0.544 4.544 10 H 0.044 0.956 11 C 0.027 3.973 12 N -0.916 5.916 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.278 1.278 17 C 0.157 3.843 18 C -0.133 4.133 19 C -0.092 4.092 20 C 0.032 3.968 21 C 0.060 3.940 22 C -0.129 4.129 23 O -0.328 6.328 24 C 0.011 3.989 25 C 0.016 3.984 26 O -0.314 6.314 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.039 0.961 35 H 0.027 0.973 36 H 0.270 0.730 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 -3.050 -0.426 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.035 4.035 3 C -0.176 4.176 4 C -0.263 4.263 5 C 0.337 3.663 6 O -0.455 6.455 7 N -0.283 5.283 8 C 0.136 3.864 9 C -0.583 4.583 10 H 0.063 0.937 11 C -0.174 4.174 12 N -0.555 5.555 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.204 1.204 17 C 0.064 3.936 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.013 4.013 21 C 0.014 3.986 22 C -0.149 4.149 23 O -0.243 6.243 24 C -0.064 4.064 25 C -0.058 4.058 26 O -0.230 6.230 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.184 0.816 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.174 0.826 42 H 0.179 0.821 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.105 -3.072 -0.389 13.466 hybrid contribution 0.839 -0.160 -1.077 1.375 sum -12.266 -3.232 -1.466 12.769 Atomic orbital electron populations 1.20932 0.90775 1.02038 1.02450 1.22927 0.96988 0.95106 0.88490 1.21043 1.00063 0.92634 1.03815 1.22498 1.00756 0.91270 1.11746 1.19045 0.86762 0.85074 0.75456 1.90684 1.14383 1.88129 1.52328 1.45806 1.09096 1.03359 1.70010 1.19250 0.72532 0.97896 0.96705 1.21548 0.91874 1.52008 0.92851 0.93733 1.25563 0.97202 0.94263 1.00355 1.69990 1.05272 1.50193 1.30042 0.85620 0.77768 0.78698 0.80016 1.19353 1.20202 1.20354 1.17519 0.94546 0.87754 0.93738 1.21059 1.01921 0.93445 0.98826 1.20466 0.96568 0.97455 0.96616 1.18823 0.99466 0.87269 0.95724 1.18553 0.96003 0.95167 0.88893 1.20222 0.99556 0.96691 0.98462 1.86277 1.62410 1.30817 1.44780 1.24044 1.03374 0.80194 0.98770 1.23965 0.87035 1.06259 0.88584 1.86275 1.44310 1.28842 1.63524 0.91707 0.89838 0.92287 0.89363 0.88578 0.91081 0.85531 0.94350 0.95501 0.92128 0.84080 0.81615 0.87448 0.90356 0.82619 0.82101 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.22 8.33 71.24 0.59 -2.62 16 2 C -0.03 -1.06 6.11 -17.61 -0.11 -1.17 16 3 C -0.12 -2.77 9.98 71.24 0.71 -2.06 16 4 C -0.24 -9.72 8.76 23.42 0.21 -9.51 16 5 C 0.54 24.69 7.36 86.56 0.64 25.33 16 6 O -0.57 -26.88 12.43 -4.15 -0.05 -26.93 16 7 N -0.56 -26.18 2.57 -639.31 -1.64 -27.82 16 8 C 0.26 12.91 4.68 85.63 0.40 13.31 16 9 C -0.54 -29.71 9.30 25.60 0.24 -29.48 16 10 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 11 C 0.03 1.44 5.46 84.66 0.46 1.91 16 12 N -0.92 -50.79 13.29 21.45 0.28 -50.50 16 13 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 C 0.16 6.97 5.18 38.12 0.20 7.17 16 18 C -0.13 -5.07 9.30 22.39 0.21 -4.86 16 19 C -0.09 -3.03 9.95 22.36 0.22 -2.80 16 20 C 0.03 1.09 6.50 22.57 0.15 1.24 16 21 C 0.06 2.24 6.49 22.55 0.15 2.39 16 22 C -0.13 -5.63 8.85 22.50 0.20 -5.43 16 23 O -0.33 -10.78 10.42 -82.70 -0.86 -11.64 16 24 C 0.01 0.22 7.26 72.14 0.52 0.74 16 25 C 0.02 0.29 7.26 72.14 0.52 0.82 16 26 O -0.31 -8.60 10.42 -83.64 -0.87 -9.48 16 27 H 0.06 2.18 7.22 -2.39 -0.02 2.16 16 28 H 0.08 1.87 7.94 -2.38 -0.02 1.85 16 29 H 0.06 2.05 7.22 -2.39 -0.02 2.03 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 1.68 8.05 -2.39 -0.02 1.66 16 32 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.13 5.41 6.33 -2.91 -0.02 5.40 16 34 H 0.04 1.97 6.36 -2.39 -0.02 1.96 16 35 H 0.03 1.41 7.30 -2.39 -0.02 1.40 16 36 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 37 H 0.14 5.04 7.78 -2.91 -0.02 5.02 16 38 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 39 H 0.11 5.04 8.04 -2.91 -0.02 5.02 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.16 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.52 359.95 5.21 -64.30 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 1.02 Total: 22.18 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.31 Total: -5.04 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.36 Total: -78.32 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.78 Total: -48.05 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.52 5.21 -64.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103963140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.214 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds