Wall clock time and date at job start Tue Mar 31 2020 11:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.99787 * 2 1 4 4 N 1.46496 * 109.47109 * 50.33613 * 3 2 1 5 5 C 1.34779 * 120.00288 * 179.97438 * 4 3 2 6 6 O 1.21718 * 119.99833 * 359.97438 * 5 4 3 7 7 C 1.46259 * 120.00006 * 180.02562 * 5 4 3 8 8 C 1.35025 * 119.99798 * 179.97438 * 7 5 4 9 9 C 1.46957 * 119.99917 * 179.97438 * 8 7 5 10 10 C 1.40022 * 120.10075 * 0.24786 * 9 8 7 11 11 C 1.37603 * 119.89579 * 180.23005 * 10 9 8 12 12 C 1.39173 * 120.09887 * 359.49578 * 11 10 9 13 13 O 1.35575 * 119.89336 * 180.24968 * 12 11 10 14 14 C 1.34782 * 117.00425 * 354.45499 * 13 12 11 15 15 H 1.07998 * 119.99692 * 5.04719 * 14 13 12 16 16 C 1.38720 * 120.00171 * 185.05533 * 14 13 12 17 17 N 1.31502 * 119.99836 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99789 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47403 * 90.00488 * 18 16 14 20 20 H 1.48506 * 109.47115 * 210.00276 * 18 16 14 21 21 H 1.48500 * 109.47582 * 330.00215 * 18 16 14 22 22 C 1.39169 * 120.20622 * 0.28015 * 12 11 10 23 23 C 1.37593 * 120.10152 * 359.97066 * 22 12 11 24 24 C 1.54027 * 113.81755 * 131.83004 * 2 1 3 25 25 O 1.44448 * 85.42826 * 91.80652 * 24 2 1 26 26 C 1.44174 * 93.37498 * 24.09056 * 25 24 2 27 27 H 1.08998 * 109.47193 * 59.99747 * 1 2 3 28 28 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47140 * 299.99858 * 1 2 3 30 30 H 1.09000 * 109.47640 * 290.33533 * 3 2 1 31 31 H 1.09003 * 109.47028 * 170.33275 * 3 2 1 32 32 H 0.97005 * 120.00234 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.00036 * 359.97438 * 7 5 4 34 34 H 1.08006 * 119.99638 * 359.97438 * 8 7 5 35 35 H 1.08004 * 120.05326 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.94365 * 179.77701 * 11 10 9 37 37 H 0.97006 * 119.99737 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.95000 * 179.97438 * 22 12 11 39 39 H 1.08005 * 120.05383 * 179.97438 * 23 22 12 40 40 H 1.09003 * 113.86608 * 205.91649 * 24 2 1 41 41 H 1.09003 * 113.86446 * 337.62141 * 24 2 1 42 42 H 1.08997 * 113.86511 * 221.76334 * 26 25 24 43 43 H 1.09001 * 113.98577 * 90.07604 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 7 1.5070 2.2023 1.0632 5 6 1.8804 3.4834 1.2532 6 8 2.7336 3.9805 0.5416 7 6 1.2610 4.2758 2.3151 8 6 1.6354 5.5590 2.5057 9 6 1.0127 6.3554 3.5723 10 6 0.0347 5.7841 4.3955 11 6 -0.5490 6.5351 5.3898 12 6 -0.1611 7.8573 5.5847 13 8 -0.7354 8.5919 6.5690 14 6 -1.7521 8.0209 7.2449 15 1 -2.0211 6.9935 7.0490 16 6 -2.4530 8.7530 8.1921 17 7 -3.4453 8.1960 8.8512 18 14 -1.9872 10.5298 8.5312 19 1 -2.7590 11.4243 7.6315 20 1 -2.2981 10.8619 9.9449 21 1 -0.5343 10.7161 8.2871 22 6 0.8139 8.4280 4.7721 23 6 1.3994 7.6863 3.7719 24 6 2.1520 -0.9398 1.0500 25 8 2.1470 -1.9297 -0.0020 26 6 2.1520 -0.9397 -1.0501 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9410 1.8824 -0.9636 31 1 3.2023 1.3470 0.1726 32 1 0.8273 1.8061 1.6306 33 1 0.5042 3.8345 2.9467 34 1 2.3926 6.0001 1.8743 35 1 -0.2641 4.7568 4.2475 36 1 -1.3061 6.0962 6.0228 37 1 -3.9351 8.7078 9.5138 38 1 1.1116 9.4546 4.9267 39 1 2.1558 8.1301 3.1415 40 1 3.1503 -0.6427 1.3714 41 1 1.4868 -1.1743 1.8810 42 1 1.4869 -1.1741 -1.8812 43 1 3.1494 -0.6414 -1.3732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112620682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:19 Heat of formation + Delta-G solvation = -36.873105 kcal Electronic energy + Delta-G solvation = -24560.923934 eV Core-core repulsion = 20766.572181 eV Total energy + Delta-G solvation = -3794.351752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23382 -39.57206 -39.23665 -37.08717 -35.33875 -33.30725 -32.49776 -32.01902 -30.48293 -28.79258 -27.52910 -27.04085 -25.89085 -25.16534 -23.12702 -22.16117 -20.79582 -19.71121 -19.01090 -18.17585 -17.76782 -17.10136 -16.71539 -16.51496 -15.96925 -15.50196 -15.13672 -14.92295 -14.67964 -14.30737 -14.08447 -14.04044 -13.95534 -13.57808 -13.40195 -13.00080 -12.84423 -12.52077 -12.48314 -12.34417 -12.05214 -11.92672 -11.88530 -11.23533 -11.16635 -11.03913 -10.91267 -10.80960 -10.29264 -10.13709 -9.87261 -9.68571 -9.56189 -9.22729 -8.93550 -8.49340 -7.26450 -6.62685 -4.26395 0.96111 2.01209 2.44700 3.03073 3.10472 3.14526 3.22914 3.27815 3.48718 3.71009 4.07169 4.18078 4.40103 4.41013 4.61419 4.62334 4.85950 4.90217 4.92071 5.03548 5.11428 5.15753 5.24583 5.28501 5.39726 5.43155 5.44379 5.55355 5.58106 5.61808 5.66893 5.74663 5.91800 5.96062 6.24665 6.33629 6.39143 6.51129 6.62872 6.90516 7.05785 7.14451 7.39374 7.44433 7.60135 7.81862 8.24862 8.70727 9.31079 10.43519 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.001968 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.685635 B =14226.904665 C =15104.497960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.130 3.870 4 N -0.732 5.732 5 C 0.555 3.445 6 O -0.558 6.558 7 C -0.278 4.278 8 C 0.035 3.965 9 C -0.190 4.190 10 C -0.040 4.040 11 C -0.230 4.230 12 C 0.173 3.827 13 O -0.202 6.202 14 C -0.392 4.392 15 H 0.111 0.889 16 C 0.066 3.934 17 N -0.867 5.867 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.258 1.258 22 C -0.199 4.199 23 C -0.042 4.042 24 C 0.043 3.957 25 O -0.379 6.379 26 C 0.049 3.951 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.283 0.717 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -13.752 -15.146 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C 0.006 3.994 4 N -0.385 5.385 5 C 0.347 3.653 6 O -0.439 6.439 7 C -0.299 4.299 8 C 0.015 3.985 9 C -0.191 4.191 10 C -0.058 4.058 11 C -0.249 4.249 12 C 0.119 3.881 13 O -0.105 6.105 14 C -0.466 4.466 15 H 0.128 0.872 16 C -0.140 4.140 17 N -0.502 5.502 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.182 1.182 22 C -0.218 4.218 23 C -0.060 4.060 24 C -0.034 4.034 25 O -0.298 6.298 26 C -0.029 4.029 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.406 -13.438 -15.358 22.071 hybrid contribution -0.419 0.543 0.608 0.917 sum 7.987 -12.896 -14.750 21.158 Atomic orbital electron populations 1.21573 0.91372 1.02907 1.02872 1.23990 0.98269 0.95013 0.97249 1.21314 0.97300 0.89006 0.91784 1.45858 1.43751 1.12614 1.36230 1.18416 0.81720 0.81171 0.83969 1.90779 1.33262 1.71349 1.48485 1.22477 1.07712 0.96537 1.03200 1.22291 0.92460 0.92344 0.91363 1.18525 1.04201 0.95022 1.01339 1.21045 0.93439 0.98372 0.92978 1.21214 1.05979 0.94764 1.02972 1.19363 0.91584 0.90282 0.86901 1.83508 1.44452 1.42061 1.40472 1.20869 1.07573 0.99604 1.18602 0.87214 1.24541 0.94350 1.00200 0.94861 1.69613 1.18905 1.38118 1.23607 0.86155 0.80439 0.82496 0.77732 1.19624 1.20509 1.18189 1.20152 1.01742 1.00820 0.99090 1.20876 0.96971 0.92604 0.95585 1.24181 1.00761 0.86221 0.92211 1.89737 1.95777 1.27432 1.16853 1.23993 1.00674 0.86005 0.92192 0.91419 0.91303 0.91654 0.91102 0.91189 0.76457 0.85821 0.85779 0.86594 0.84559 0.90643 0.86045 0.86189 0.89735 0.88834 0.88763 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 8.82 37.16 0.33 -0.41 16 2 C -0.14 -0.91 1.12 -153.43 -0.17 -1.08 16 3 C 0.13 1.06 5.15 -4.04 -0.02 1.04 16 4 N -0.73 -6.82 5.31 -61.76 -0.33 -7.15 16 5 C 0.56 7.26 7.74 -13.04 -0.10 7.16 16 6 O -0.56 -9.25 16.23 5.17 0.08 -9.16 16 7 C -0.28 -3.57 9.41 -37.50 -0.35 -3.92 16 8 C 0.04 0.50 9.45 -37.19 -0.35 0.15 16 9 C -0.19 -3.03 5.87 -105.03 -0.62 -3.65 16 10 C -0.04 -0.67 9.40 -39.15 -0.37 -1.04 16 11 C -0.23 -4.59 9.14 -39.47 -0.36 -4.95 16 12 C 0.17 3.73 6.66 -38.89 -0.26 3.47 16 13 O -0.20 -5.00 8.57 0.72 0.01 -4.99 16 14 C -0.39 -10.37 9.94 30.91 0.31 -10.06 16 15 H 0.11 2.95 5.41 -52.49 -0.28 2.66 16 16 C 0.07 1.75 5.49 -17.51 -0.10 1.65 16 17 N -0.87 -23.68 13.96 55.48 0.77 -22.91 16 18 Si 0.91 20.46 28.62 -169.99 -4.86 15.59 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 22 C -0.20 -3.66 9.97 -39.47 -0.39 -4.05 16 23 C -0.04 -0.67 9.78 -39.15 -0.38 -1.05 16 24 C 0.04 0.29 8.37 37.64 0.32 0.61 16 25 O -0.38 -3.38 12.38 -35.23 -0.44 -3.82 16 26 C 0.05 0.31 8.37 37.64 0.31 0.62 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.06 0.33 6.64 -51.93 -0.35 -0.01 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.62 7.98 -51.93 -0.41 0.20 16 32 H 0.40 2.85 6.90 -40.82 -0.28 2.57 16 33 H 0.12 1.37 6.06 -52.49 -0.32 1.05 16 34 H 0.12 1.73 7.52 -52.48 -0.39 1.34 16 35 H 0.12 1.61 6.16 -52.48 -0.32 1.29 16 36 H 0.14 2.83 5.62 -52.49 -0.29 2.54 16 37 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 39 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.08 0.54 7.99 -51.93 -0.41 0.13 16 41 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 42 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 43 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -30.48 364.45 -7.06 -37.54 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.58 Total: 4.93 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.21 Total: -15.51 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.45 Total: -30.06 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.35 Total: -17.98 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.86 Total: 15.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.48 -7.06 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112620682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.663 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds