Wall clock time and date at job start Tue Mar 31 2020 11:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.99787 * 2 1 4 4 N 1.46496 * 109.47109 * 50.33613 * 3 2 1 5 5 C 1.34779 * 120.00288 * 179.97438 * 4 3 2 6 6 O 1.21718 * 119.99833 * 359.97438 * 5 4 3 7 7 C 1.46259 * 120.00006 * 180.02562 * 5 4 3 8 8 C 1.35025 * 119.99798 * 179.97438 * 7 5 4 9 9 C 1.46957 * 119.99917 * 179.97438 * 8 7 5 10 10 C 1.40022 * 120.10075 * 0.24786 * 9 8 7 11 11 C 1.37603 * 119.89579 * 180.23005 * 10 9 8 12 12 C 1.39173 * 120.09887 * 359.49578 * 11 10 9 13 13 O 1.35575 * 119.89336 * 180.24968 * 12 11 10 14 14 C 1.34782 * 117.00425 * 354.45499 * 13 12 11 15 15 H 1.07998 * 119.99692 * 5.04719 * 14 13 12 16 16 C 1.38720 * 120.00171 * 185.05533 * 14 13 12 17 17 N 1.31502 * 119.99836 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99789 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47403 * 90.00488 * 18 16 14 20 20 H 1.48506 * 109.47115 * 210.00276 * 18 16 14 21 21 H 1.48500 * 109.47582 * 330.00215 * 18 16 14 22 22 C 1.39169 * 120.20622 * 0.28015 * 12 11 10 23 23 C 1.37593 * 120.10152 * 359.97066 * 22 12 11 24 24 C 1.54027 * 113.81755 * 131.83004 * 2 1 3 25 25 O 1.44448 * 85.42826 * 91.80652 * 24 2 1 26 26 C 1.44174 * 93.37498 * 24.09056 * 25 24 2 27 27 H 1.08998 * 109.47193 * 59.99747 * 1 2 3 28 28 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47140 * 299.99858 * 1 2 3 30 30 H 1.09000 * 109.47640 * 290.33533 * 3 2 1 31 31 H 1.09003 * 109.47028 * 170.33275 * 3 2 1 32 32 H 0.97005 * 120.00234 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.00036 * 359.97438 * 7 5 4 34 34 H 1.08006 * 119.99638 * 359.97438 * 8 7 5 35 35 H 1.08004 * 120.05326 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.94365 * 179.77701 * 11 10 9 37 37 H 0.97006 * 119.99737 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.95000 * 179.97438 * 22 12 11 39 39 H 1.08005 * 120.05383 * 179.97438 * 23 22 12 40 40 H 1.09003 * 113.86608 * 205.91649 * 24 2 1 41 41 H 1.09003 * 113.86446 * 337.62141 * 24 2 1 42 42 H 1.08997 * 113.86511 * 221.76334 * 26 25 24 43 43 H 1.09001 * 113.98577 * 90.07604 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 7 1.5070 2.2023 1.0632 5 6 1.8804 3.4834 1.2532 6 8 2.7336 3.9805 0.5416 7 6 1.2610 4.2758 2.3151 8 6 1.6354 5.5590 2.5057 9 6 1.0127 6.3554 3.5723 10 6 0.0347 5.7841 4.3955 11 6 -0.5490 6.5351 5.3898 12 6 -0.1611 7.8573 5.5847 13 8 -0.7354 8.5919 6.5690 14 6 -1.7521 8.0209 7.2449 15 1 -2.0211 6.9935 7.0490 16 6 -2.4530 8.7530 8.1921 17 7 -3.4453 8.1960 8.8512 18 14 -1.9872 10.5298 8.5312 19 1 -2.7590 11.4243 7.6315 20 1 -2.2981 10.8619 9.9449 21 1 -0.5343 10.7161 8.2871 22 6 0.8139 8.4280 4.7721 23 6 1.3994 7.6863 3.7719 24 6 2.1520 -0.9398 1.0500 25 8 2.1470 -1.9297 -0.0020 26 6 2.1520 -0.9397 -1.0501 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9410 1.8824 -0.9636 31 1 3.2023 1.3470 0.1726 32 1 0.8273 1.8061 1.6306 33 1 0.5042 3.8345 2.9467 34 1 2.3926 6.0001 1.8743 35 1 -0.2641 4.7568 4.2475 36 1 -1.3061 6.0962 6.0228 37 1 -3.9351 8.7078 9.5138 38 1 1.1116 9.4546 4.9267 39 1 2.1558 8.1301 3.1415 40 1 3.1503 -0.6427 1.3714 41 1 1.4868 -1.1743 1.8810 42 1 1.4869 -1.1741 -1.8812 43 1 3.1494 -0.6414 -1.3732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112620682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:18 Heat of formation + Delta-G solvation = -56.658951 kcal Electronic energy + Delta-G solvation = -24561.781913 eV Core-core repulsion = 20766.572181 eV Total energy + Delta-G solvation = -3795.209731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82472 -40.98094 -40.41966 -38.59463 -36.19283 -34.77864 -34.17989 -32.75840 -31.92706 -30.09233 -28.21755 -27.55673 -27.31617 -26.23251 -24.38275 -23.57223 -22.01810 -20.65836 -19.93104 -19.71415 -19.28004 -18.25669 -17.51535 -17.08207 -16.78813 -16.62315 -16.22558 -16.06709 -15.97835 -15.79244 -15.67431 -15.38308 -14.78207 -14.56945 -14.52600 -14.15054 -14.12674 -13.95359 -13.38700 -13.34604 -13.17138 -12.97060 -12.73590 -12.61760 -12.61457 -12.38494 -11.95892 -11.73402 -11.49688 -11.28008 -11.15476 -10.98105 -10.67249 -10.65117 -10.09124 -9.90914 -8.73591 -8.53537 -6.24664 -0.27546 0.56061 1.11216 1.32606 1.36926 1.51927 2.20950 2.26113 2.35649 2.70423 2.80787 3.01216 3.14529 3.16180 3.63318 3.79212 3.87599 3.90264 4.07639 4.12652 4.31090 4.35917 4.39045 4.46913 4.55101 4.57693 4.59860 4.68392 4.82012 4.87904 4.89932 4.92756 5.10770 5.13152 5.15742 5.17911 5.26358 5.29221 5.41436 5.47552 5.56946 5.71582 5.79872 5.85413 6.15159 6.56634 6.80070 7.26232 7.52023 8.57074 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.001968 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.685635 B =14226.904665 C =15104.497960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.132 4.132 3 C 0.131 3.869 4 N -0.714 5.714 5 C 0.551 3.449 6 O -0.593 6.593 7 C -0.247 4.247 8 C 0.015 3.985 9 C -0.162 4.162 10 C -0.043 4.043 11 C -0.242 4.242 12 C 0.136 3.864 13 O -0.235 6.235 14 C -0.402 4.402 15 H 0.088 0.912 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.262 1.262 22 C -0.197 4.197 23 C -0.040 4.040 24 C 0.039 3.961 25 O -0.406 6.406 26 C 0.046 3.954 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.414 0.586 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.286 0.714 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 -14.743 -17.557 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C 0.007 3.993 4 N -0.366 5.366 5 C 0.342 3.658 6 O -0.476 6.476 7 C -0.267 4.267 8 C -0.005 4.005 9 C -0.163 4.163 10 C -0.061 4.061 11 C -0.261 4.261 12 C 0.085 3.915 13 O -0.142 6.142 14 C -0.478 4.478 15 H 0.105 0.895 16 C -0.187 4.187 17 N -0.555 5.555 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.186 1.186 22 C -0.216 4.216 23 C -0.058 4.058 24 C -0.037 4.037 25 O -0.325 6.325 26 C -0.031 4.031 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.251 0.749 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.152 0.848 39 H 0.176 0.824 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.036 -14.485 -17.810 25.055 hybrid contribution -0.639 0.452 0.879 1.177 sum 9.397 -14.033 -16.931 23.914 Atomic orbital electron populations 1.21592 0.90675 1.03092 1.03367 1.23882 0.98632 0.93519 0.97263 1.21374 0.97144 0.89681 0.91070 1.45768 1.43184 1.11519 1.36102 1.18491 0.81434 0.82159 0.83722 1.90780 1.34822 1.72298 1.49693 1.22797 1.06154 0.95907 1.01882 1.22219 0.93686 0.92900 0.91651 1.18843 1.02140 0.95083 1.00188 1.21335 0.93216 0.99628 0.91911 1.21250 1.06165 0.94824 1.03892 1.19933 0.92790 0.91132 0.87619 1.83468 1.45361 1.42671 1.42654 1.20767 1.08671 0.98979 1.19363 0.89504 1.25290 0.94458 1.04011 0.94905 1.69693 1.20772 1.39678 1.25379 0.85245 0.79669 0.77955 0.78064 1.19067 1.19275 1.18590 1.20458 1.00624 1.01778 0.98743 1.21321 0.97076 0.92499 0.94905 1.24314 1.01235 0.85833 0.92306 1.89720 1.95915 1.28811 1.18075 1.24171 1.01513 0.85237 0.92156 0.91147 0.91336 0.90920 0.91437 0.91619 0.74853 0.83581 0.85105 0.83429 0.86552 0.90404 0.84768 0.82352 0.89514 0.87882 0.87583 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.82 71.98 0.63 -0.45 16 2 C -0.13 -1.32 1.12 -51.48 -0.06 -1.37 16 3 C 0.13 1.77 5.15 86.38 0.44 2.21 16 4 N -0.71 -10.74 5.31 -467.50 -2.48 -13.23 16 5 C 0.55 12.40 7.74 86.33 0.67 13.07 16 6 O -0.59 -17.93 16.23 -4.41 -0.07 -18.00 16 7 C -0.25 -5.25 9.41 23.62 0.22 -5.02 16 8 C 0.02 0.37 9.45 23.82 0.23 0.60 16 9 C -0.16 -4.61 5.87 -20.13 -0.12 -4.73 16 10 C -0.04 -1.35 9.40 22.55 0.21 -1.13 16 11 C -0.24 -9.79 9.14 22.34 0.20 -9.59 16 12 C 0.14 5.96 6.66 22.72 0.15 6.11 16 13 O -0.24 -12.14 8.57 -20.33 -0.17 -12.31 16 14 C -0.40 -22.56 9.94 67.94 0.68 -21.88 16 15 H 0.09 5.06 5.41 -2.91 -0.02 5.04 16 16 C 0.01 0.72 5.49 84.86 0.47 1.19 16 17 N -0.92 -52.64 13.96 21.62 0.30 -52.34 16 18 Si 0.97 43.62 28.62 68.60 1.96 45.58 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.20 -7.00 9.97 22.34 0.22 -6.78 16 23 C -0.04 -1.16 9.78 22.55 0.22 -0.94 16 24 C 0.04 0.45 8.37 72.29 0.61 1.05 16 25 O -0.41 -6.49 12.38 -148.98 -1.84 -8.33 16 26 C 0.05 0.48 8.37 72.29 0.60 1.08 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 29 H 0.07 0.49 6.64 -2.39 -0.02 0.48 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.00 7.98 -2.39 -0.02 0.98 16 32 H 0.41 4.15 6.90 -92.70 -0.64 3.51 16 33 H 0.15 2.45 6.06 -2.91 -0.02 2.44 16 34 H 0.13 3.13 7.52 -2.91 -0.02 3.10 16 35 H 0.15 3.57 6.16 -2.91 -0.02 3.55 16 36 H 0.12 5.14 5.62 -2.91 -0.02 5.13 16 37 H 0.29 15.09 8.31 -92.70 -0.77 14.32 16 38 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 39 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 40 H 0.09 0.92 7.99 -2.39 -0.02 0.90 16 41 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 42 H 0.11 0.83 8.10 -2.39 -0.02 0.81 16 43 H 0.09 0.79 8.10 -2.39 -0.02 0.77 16 Total: -1.00 -69.42 364.45 3.48 -65.95 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.40 Total: 19.28 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 5.38 Total: -26.59 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -2.18 Total: -65.57 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -2.09 Total: -38.65 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.96 Total: 45.58 kcal Total: -69.42 3.48 -65.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112620682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.287 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds