Wall clock time and date at job start Tue Mar 31 2020 11:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.52997 * 109.47278 * 240.00165 * 2 1 3 5 5 C 1.52999 * 109.47312 * 119.99931 * 2 1 3 6 6 H 1.08992 * 109.47528 * 179.97438 * 5 2 1 7 7 C 1.47204 * 109.47248 * 300.00542 * 5 2 1 8 8 N 3.43547 * 83.99470 * 81.44715 * 2 1 3 9 9 O 1.45200 * 109.46739 * 59.99972 * 5 2 1 10 10 C 1.34236 * 116.99786 * 150.00112 * 9 5 2 11 11 O 1.20827 * 119.99779 * 0.02562 * 10 9 5 12 12 C 1.50698 * 119.99884 * 179.97438 * 10 9 5 13 13 C 1.50703 * 109.47076 * 179.97438 * 12 10 9 14 14 C 1.38298 * 119.93165 * 269.73157 * 13 12 10 15 15 C 1.38106 * 120.06625 * 179.72145 * 14 13 12 16 16 C 1.38881 * 119.92953 * 0.56998 * 15 14 13 17 17 O 1.35752 * 120.06806 * 179.67658 * 16 15 14 18 18 C 1.34827 * 116.99981 * 174.48422 * 17 16 15 19 19 H 1.07998 * 120.00050 * 5.06648 * 18 17 16 20 20 C 1.38655 * 120.00011 * 185.05958 * 18 17 16 21 21 N 1.31564 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47176 * 89.99889 * 22 20 18 24 24 H 1.48494 * 109.47221 * 210.00234 * 22 20 18 25 25 H 1.48504 * 109.46841 * 330.00120 * 22 20 18 26 26 C 1.38874 * 119.86332 * 359.70338 * 16 15 14 27 27 C 1.38099 * 119.93048 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47516 * 299.99902 * 1 2 3 29 29 H 1.08997 * 109.47348 * 60.00326 * 1 2 3 30 30 H 1.09006 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47435 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47210 * 300.00191 * 3 2 1 33 33 H 1.09004 * 109.46726 * 59.99990 * 3 2 1 34 34 H 1.09006 * 109.47282 * 300.00253 * 4 2 1 35 35 H 1.08997 * 109.47332 * 59.99499 * 4 2 1 36 36 H 1.09002 * 109.47218 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47561 * 299.99748 * 12 10 9 38 38 H 1.09000 * 109.47210 * 60.00715 * 12 10 9 39 39 H 1.07999 * 119.96916 * 359.97438 * 14 13 12 40 40 H 1.08001 * 120.03394 * 180.27455 * 15 14 13 41 41 H 0.96993 * 119.99700 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.03697 * 179.97438 * 26 16 15 43 43 H 1.08005 * 119.96406 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1299 -0.7216 1.2490 7 6 1.5493 -0.0274 2.4512 8 7 1.1705 0.5081 3.3786 9 8 1.5560 -2.0902 1.2492 10 6 2.3294 -3.0100 1.8472 11 8 3.3759 -2.6820 2.3543 12 6 1.8919 -4.4515 1.8871 13 6 2.9298 -5.2717 2.6090 14 6 3.9661 -5.8519 1.9004 15 6 4.9220 -6.5993 2.5600 16 6 4.8352 -6.7778 3.9345 17 8 5.7696 -7.5174 4.5847 18 6 5.6917 -7.5564 5.9302 19 1 4.8643 -7.0824 6.4372 20 6 6.6738 -8.2053 6.6629 21 7 7.6820 -8.7824 6.0453 22 14 6.5656 -8.2600 8.5270 23 1 5.8070 -9.4667 8.9435 24 1 7.9341 -8.3130 9.1009 25 1 5.8695 -7.0437 9.0183 26 6 3.7901 -6.1986 4.6424 27 6 2.8411 -5.4468 3.9781 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 0.9392 -4.5278 2.4111 38 1 1.7778 -4.8249 0.8694 39 1 4.0303 -5.7169 0.8308 40 1 5.7336 -7.0484 2.0067 41 1 8.3688 -9.2366 6.5579 42 1 3.7196 -6.3360 5.7112 43 1 2.0279 -4.9965 4.5280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154619073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:26 Heat of formation + Delta-G solvation = -70.102126 kcal Electronic energy + Delta-G solvation = -25528.882917 eV Core-core repulsion = 21733.090246 eV Total energy + Delta-G solvation = -3795.792671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99212 -39.17053 -38.43876 -36.71684 -36.18610 -35.82066 -32.56261 -31.60057 -30.21461 -28.64583 -27.77545 -27.68760 -26.66146 -25.18131 -22.08162 -21.98116 -20.48120 -20.14287 -18.49315 -18.03827 -17.81336 -17.06695 -16.59297 -15.71446 -15.20677 -14.79905 -14.62141 -14.45558 -14.35210 -14.21575 -13.79231 -13.65805 -13.55441 -13.29254 -13.06816 -12.77031 -12.68340 -12.62360 -12.52588 -12.34899 -12.04989 -11.97904 -11.62015 -11.52108 -11.34335 -11.29020 -11.18210 -11.09973 -10.93120 -10.83829 -10.66500 -10.45698 -10.43326 -9.36834 -8.85800 -8.21297 -7.24551 -6.47859 -4.06365 1.75201 2.14982 2.20173 2.28310 2.38305 2.95221 3.12025 3.13567 3.18080 3.44866 3.95038 4.07584 4.30913 4.37503 4.55230 4.71761 4.87915 4.92426 5.05103 5.14568 5.14951 5.24297 5.26028 5.27834 5.37495 5.47684 5.49343 5.55465 5.56636 5.66635 5.70243 5.78194 5.89459 5.91272 6.15643 6.19115 6.36153 6.64678 6.85505 7.00882 7.12871 7.17508 7.30047 7.40561 7.68469 7.77543 7.97226 8.97748 9.66609 10.69909 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.002474 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.023686 B =11315.496550 C =11843.687339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C -0.148 4.148 4 C -0.143 4.143 5 C 0.194 3.806 6 H 0.127 0.873 7 C 0.194 3.806 8 N -0.401 5.401 9 O -0.341 6.341 10 C 0.451 3.549 11 O -0.481 6.481 12 C -0.047 4.047 13 C -0.188 4.188 14 C -0.055 4.055 15 C -0.192 4.192 16 C 0.160 3.840 17 O -0.175 6.175 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.233 4.233 27 C -0.052 4.052 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 14.529 -15.081 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.057 4.057 3 C -0.206 4.206 4 C -0.200 4.200 5 C 0.135 3.865 6 H 0.144 0.856 7 C -0.125 4.125 8 N -0.080 5.080 9 O -0.257 6.257 10 C 0.293 3.707 11 O -0.364 6.364 12 C -0.084 4.084 13 C -0.189 4.189 14 C -0.073 4.073 15 C -0.211 4.211 16 C 0.106 3.894 17 O -0.077 6.077 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.253 4.253 27 C -0.071 4.071 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.145 0.855 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.263 15.150 -13.543 24.266 hybrid contribution 0.214 -0.087 0.862 0.893 sum -13.049 15.064 -12.681 23.622 Atomic orbital electron populations 1.21921 0.92942 1.03294 1.02102 1.20667 0.97500 0.95249 0.92285 1.21952 1.01888 0.93824 1.02908 1.21869 1.01450 1.01143 0.95529 1.20049 1.00760 0.78601 0.87093 0.85581 1.29270 0.93841 0.94911 0.94521 1.81190 1.08401 1.08157 1.10217 1.86743 1.50905 1.16211 1.71818 1.24566 0.82467 0.89073 0.74573 1.90737 1.23443 1.81090 1.41164 1.20122 0.99736 0.85062 1.03507 1.18609 0.99820 1.06559 0.93878 1.20417 0.92951 0.95793 0.98160 1.20165 1.02191 1.06590 0.92173 1.19411 0.88821 0.89230 0.91980 1.83975 1.44852 1.57546 1.21374 1.21347 1.10180 1.37021 0.78269 0.88995 1.25303 0.94589 0.96025 1.00563 1.70038 1.10621 1.32529 1.36360 0.85705 0.78114 0.79082 0.80521 1.19821 1.20200 1.19160 1.21110 0.97705 1.05617 1.00819 1.20541 0.97300 0.96176 0.93035 0.92840 0.91683 0.90970 0.91567 0.90802 0.92421 0.91169 0.91451 0.91999 0.87626 0.87350 0.87068 0.86357 0.91952 0.85469 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.08 37.16 0.30 -0.63 16 2 C -0.06 -0.36 0.63 -154.51 -0.10 -0.46 16 3 C -0.15 -0.84 8.22 37.16 0.31 -0.54 16 4 C -0.14 -0.76 8.33 37.16 0.31 -0.45 16 5 C 0.19 1.83 1.69 -29.52 -0.05 1.78 16 6 H 0.13 1.20 7.15 -51.93 -0.37 0.83 16 7 C 0.19 2.32 12.45 -20.76 -0.26 2.06 16 8 N -0.40 -5.71 18.54 42.15 0.78 -4.92 16 9 O -0.34 -3.48 8.50 -39.27 -0.33 -3.81 16 10 C 0.45 5.78 7.91 36.00 0.28 6.06 16 11 O -0.48 -8.02 15.25 -18.75 -0.29 -8.31 16 12 C -0.05 -0.54 5.94 -29.03 -0.17 -0.71 16 13 C -0.19 -3.06 4.38 -104.57 -0.46 -3.52 16 14 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 15 C -0.19 -4.00 9.99 -39.39 -0.39 -4.40 16 16 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 17 O -0.17 -4.98 9.76 0.05 0.00 -4.98 16 18 C -0.39 -10.99 9.49 30.89 0.29 -10.69 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 22 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 27 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 28 H 0.05 0.41 7.23 -51.93 -0.38 0.03 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.47 7.68 -51.93 -0.40 0.08 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.40 7.23 -51.93 -0.38 0.02 16 34 H 0.07 0.40 7.68 -51.93 -0.40 0.00 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 43 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -33.42 371.55 -5.77 -39.19 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.85 Total: 1.12 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.42 Total: -15.02 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 1.54 Total: -29.39 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.62 Total: -17.10 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.42 -5.77 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154619073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.907 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds