Wall clock time and date at job start Tue Mar 31 2020 11:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.52997 * 109.47278 * 240.00165 * 2 1 3 5 5 C 1.52999 * 109.47312 * 119.99931 * 2 1 3 6 6 H 1.08992 * 109.47528 * 179.97438 * 5 2 1 7 7 C 1.47204 * 109.47248 * 300.00542 * 5 2 1 8 8 N 3.43547 * 83.99470 * 81.44715 * 2 1 3 9 9 O 1.45200 * 109.46739 * 59.99972 * 5 2 1 10 10 C 1.34236 * 116.99786 * 150.00112 * 9 5 2 11 11 O 1.20827 * 119.99779 * 0.02562 * 10 9 5 12 12 C 1.50698 * 119.99884 * 179.97438 * 10 9 5 13 13 C 1.50703 * 109.47076 * 179.97438 * 12 10 9 14 14 C 1.38298 * 119.93165 * 269.73157 * 13 12 10 15 15 C 1.38106 * 120.06625 * 179.72145 * 14 13 12 16 16 C 1.38881 * 119.92953 * 0.56998 * 15 14 13 17 17 O 1.35752 * 120.06806 * 179.67658 * 16 15 14 18 18 C 1.34827 * 116.99981 * 174.48422 * 17 16 15 19 19 H 1.07998 * 120.00050 * 5.06648 * 18 17 16 20 20 C 1.38655 * 120.00011 * 185.05958 * 18 17 16 21 21 N 1.31564 * 119.99925 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47176 * 89.99889 * 22 20 18 24 24 H 1.48494 * 109.47221 * 210.00234 * 22 20 18 25 25 H 1.48504 * 109.46841 * 330.00120 * 22 20 18 26 26 C 1.38874 * 119.86332 * 359.70338 * 16 15 14 27 27 C 1.38099 * 119.93048 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47516 * 299.99902 * 1 2 3 29 29 H 1.08997 * 109.47348 * 60.00326 * 1 2 3 30 30 H 1.09006 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47435 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47210 * 300.00191 * 3 2 1 33 33 H 1.09004 * 109.46726 * 59.99990 * 3 2 1 34 34 H 1.09006 * 109.47282 * 300.00253 * 4 2 1 35 35 H 1.08997 * 109.47332 * 59.99499 * 4 2 1 36 36 H 1.09002 * 109.47218 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47561 * 299.99748 * 12 10 9 38 38 H 1.09000 * 109.47210 * 60.00715 * 12 10 9 39 39 H 1.07999 * 119.96916 * 359.97438 * 14 13 12 40 40 H 1.08001 * 120.03394 * 180.27455 * 15 14 13 41 41 H 0.96993 * 119.99700 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.03697 * 179.97438 * 26 16 15 43 43 H 1.08005 * 119.96406 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1299 -0.7216 1.2490 7 6 1.5493 -0.0274 2.4512 8 7 1.1705 0.5081 3.3786 9 8 1.5560 -2.0902 1.2492 10 6 2.3294 -3.0100 1.8472 11 8 3.3759 -2.6820 2.3543 12 6 1.8919 -4.4515 1.8871 13 6 2.9298 -5.2717 2.6090 14 6 3.9661 -5.8519 1.9004 15 6 4.9220 -6.5993 2.5600 16 6 4.8352 -6.7778 3.9345 17 8 5.7696 -7.5174 4.5847 18 6 5.6917 -7.5564 5.9302 19 1 4.8643 -7.0824 6.4372 20 6 6.6738 -8.2053 6.6629 21 7 7.6820 -8.7824 6.0453 22 14 6.5656 -8.2600 8.5270 23 1 5.8070 -9.4667 8.9435 24 1 7.9341 -8.3130 9.1009 25 1 5.8695 -7.0437 9.0183 26 6 3.7901 -6.1986 4.6424 27 6 2.8411 -5.4468 3.9781 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 0.9392 -4.5278 2.4111 38 1 1.7778 -4.8249 0.8694 39 1 4.0303 -5.7169 0.8308 40 1 5.7336 -7.0484 2.0067 41 1 8.3688 -9.2366 6.5579 42 1 3.7196 -6.3360 5.7112 43 1 2.0279 -4.9965 4.5280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154619073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:25 Heat of formation + Delta-G solvation = -89.376899 kcal Electronic energy + Delta-G solvation = -25529.718734 eV Core-core repulsion = 21733.090246 eV Total energy + Delta-G solvation = -3796.628488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95537 -40.76002 -39.43311 -38.26402 -37.22265 -36.65485 -34.43019 -33.04057 -31.79599 -29.57436 -28.34610 -28.16179 -27.94015 -26.99263 -23.65834 -23.26080 -21.69570 -20.90712 -19.86066 -19.37862 -18.87904 -18.74475 -17.49903 -16.78693 -16.43649 -16.14617 -16.03718 -15.94578 -15.50935 -15.14990 -14.99251 -14.82405 -14.75468 -14.41727 -14.28552 -14.10213 -13.94468 -13.63727 -13.32709 -13.06916 -12.98355 -12.93745 -12.81683 -12.53261 -12.51914 -12.36564 -12.32910 -12.26722 -12.14824 -11.90185 -11.77185 -11.65661 -11.51989 -11.19474 -10.80639 -9.77625 -8.95408 -8.49224 -6.17172 0.52667 0.60887 1.01659 1.17694 1.32896 1.42057 1.45726 1.50217 1.99283 2.15918 2.59477 2.82524 3.14908 3.45237 3.51151 3.67172 3.76226 3.88733 4.03149 4.11341 4.17720 4.30549 4.36061 4.44679 4.57887 4.71143 4.74385 4.79741 4.84706 4.95768 5.02633 5.03989 5.08622 5.12978 5.13127 5.20254 5.28767 5.35202 5.44423 5.51694 5.55065 5.70737 5.73187 6.01469 6.19512 6.21383 6.69828 6.95615 7.76151 8.73938 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.002474 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.023686 B =11315.496550 C =11843.687339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.149 4.149 4 C -0.141 4.141 5 C 0.190 3.810 6 H 0.129 0.871 7 C 0.210 3.790 8 N -0.446 5.446 9 O -0.324 6.324 10 C 0.460 3.540 11 O -0.526 6.526 12 C -0.047 4.047 13 C -0.159 4.159 14 C -0.047 4.047 15 C -0.205 4.205 16 C 0.116 3.884 17 O -0.231 6.231 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.017 2.983 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.247 4.247 27 C -0.059 4.059 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 16.197 -17.360 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 C -0.206 4.206 4 C -0.198 4.198 5 C 0.131 3.869 6 H 0.146 0.854 7 C -0.108 4.108 8 N -0.125 5.125 9 O -0.239 6.239 10 C 0.304 3.696 11 O -0.414 6.414 12 C -0.084 4.084 13 C -0.160 4.160 14 C -0.065 4.065 15 C -0.224 4.224 16 C 0.065 3.935 17 O -0.137 6.137 18 C -0.490 4.490 19 H 0.116 0.884 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.837 3.163 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.181 1.181 26 C -0.267 4.267 27 C -0.077 4.077 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.155 0.845 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.134 16.853 -15.872 28.218 hybrid contribution 0.823 -0.361 1.249 1.539 sum -15.311 16.492 -14.623 26.837 Atomic orbital electron populations 1.21935 0.92662 1.03378 1.02234 1.20736 0.97651 0.95391 0.91269 1.21987 1.02265 0.93286 1.03085 1.21888 1.01563 1.01159 0.95225 1.20489 1.00962 0.78092 0.87330 0.85390 1.29774 0.92660 0.94066 0.94327 1.81200 1.10016 1.09605 1.11691 1.86736 1.50015 1.16317 1.70858 1.24656 0.81701 0.89767 0.73520 1.90759 1.25455 1.81893 1.43249 1.20286 0.98827 0.83379 1.05880 1.19191 0.99500 1.04078 0.93236 1.20952 0.91470 0.93644 1.00437 1.20490 1.03484 1.07325 0.91140 1.20004 0.89348 0.90649 0.93459 1.83936 1.47443 1.60736 1.21624 1.21792 1.10828 1.37511 0.78902 0.88374 1.26567 0.93941 0.95406 1.06046 1.70177 1.12110 1.34889 1.38533 0.84608 0.78503 0.79691 0.73543 1.18488 1.19465 1.18099 1.21208 0.98392 1.06537 1.00537 1.20945 0.97085 0.95219 0.94409 0.94555 0.89763 0.90883 0.91085 0.88833 0.94033 0.91105 0.89677 0.91897 0.84507 0.82779 0.82422 0.86596 0.91779 0.86768 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.08 71.98 0.58 -0.82 16 2 C -0.05 -0.49 0.63 -52.18 -0.03 -0.52 16 3 C -0.15 -1.32 8.22 71.98 0.59 -0.73 16 4 C -0.14 -0.93 8.33 71.98 0.60 -0.33 16 5 C 0.19 3.10 1.69 28.79 0.05 3.15 16 6 H 0.13 2.15 7.15 -2.39 -0.02 2.13 16 7 C 0.21 4.75 12.45 89.44 1.11 5.86 16 8 N -0.45 -12.44 18.54 20.01 0.37 -12.07 16 9 O -0.32 -5.34 8.50 -51.48 -0.44 -5.78 16 10 C 0.46 9.83 7.91 71.24 0.56 10.40 16 11 O -0.53 -16.15 15.25 21.96 0.33 -15.82 16 12 C -0.05 -0.81 5.94 29.10 0.17 -0.63 16 13 C -0.16 -4.58 4.38 -19.83 -0.09 -4.67 16 14 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 15 C -0.21 -8.62 9.99 22.39 0.22 -8.40 16 16 C 0.12 5.85 6.65 22.58 0.15 6.00 16 17 O -0.23 -14.14 9.76 -22.73 -0.22 -14.36 16 18 C -0.41 -24.68 9.49 67.92 0.64 -24.03 16 19 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 20 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 21 N -0.92 -57.09 13.67 21.61 0.30 -56.80 16 22 Si 1.02 43.85 29.55 68.60 2.03 45.88 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 C -0.25 -11.06 9.17 22.39 0.21 -10.86 16 27 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 28 H 0.04 0.48 7.23 -2.39 -0.02 0.46 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.70 7.68 -2.38 -0.02 0.68 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.04 0.51 7.23 -2.39 -0.02 0.49 16 34 H 0.07 0.48 7.68 -2.38 -0.02 0.46 16 35 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.14 1.70 8.08 -2.39 -0.02 1.68 16 38 H 0.15 1.42 8.08 -2.39 -0.02 1.40 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 43 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -80.64 371.55 9.07 -71.57 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.02 Total: 16.85 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 5.67 Total: -29.48 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: 0.67 Total: -68.87 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.32 Total: -35.95 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -80.64 9.07 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154619073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.806 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds