Wall clock time and date at job start Tue Mar 31 2020 11:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47485 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46928 * 119.99926 * 9 7 5 12 12 H 1.48505 * 109.46854 * 239.99744 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.39942 * 119.99708 * 179.97438 * 14 13 2 16 16 C 1.38861 * 120.02154 * 359.73393 * 15 14 13 17 17 C 1.38108 * 119.98073 * 179.74205 * 16 15 14 18 18 C 1.38696 * 120.01722 * 0.50378 * 17 16 15 19 19 O 1.36001 * 119.98124 * 179.75062 * 18 17 16 20 20 C 1.42905 * 116.99906 * 0.02562 * 19 18 17 21 21 F 1.39902 * 109.46955 * 60.00371 * 20 19 18 22 22 F 1.39893 * 109.47122 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.47056 * 300.00191 * 20 19 18 24 24 C 1.38702 * 120.04020 * 359.76690 * 18 17 16 25 25 C 1.38111 * 120.01708 * 359.97438 * 24 18 17 26 26 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 27 27 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 28 28 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 31 31 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 32 32 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 34 34 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 38 38 H 1.08006 * 120.00671 * 359.97438 * 16 15 14 39 39 H 1.07998 * 119.98584 * 180.22997 * 17 16 15 40 40 H 1.08001 * 119.99057 * 179.97438 * 24 18 17 41 41 H 1.07997 * 120.00629 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 0.4238 1.5655 -4.8532 11 1 2.4037 0.8643 -6.0656 12 1 0.4227 -0.5345 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8892 -0.5088 3.7165 16 6 2.6825 -1.6413 3.8445 17 6 3.0195 -2.1096 5.0993 18 6 2.5573 -1.4551 6.2314 19 8 2.8855 -1.9198 7.4667 20 6 3.7097 -3.0858 7.5233 21 9 4.9267 -2.8282 6.8830 22 9 3.9478 -3.4242 8.8596 23 9 3.0611 -4.1469 6.8825 24 6 1.7602 -0.3271 6.1045 25 6 1.4266 0.1457 4.8504 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2493 33 1 1.6767 -1.7489 -1.2491 34 1 2.8610 -1.8832 -4.7335 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7580 2.3564 38 1 3.0388 -2.1536 2.9630 39 1 3.6396 -2.9882 5.1989 40 1 1.4004 0.1817 6.9866 41 1 0.8056 1.0238 4.7518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155633290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:48 Heat of formation + Delta-G solvation = -184.202175 kcal Electronic energy + Delta-G solvation = -26265.353438 eV Core-core repulsion = 21922.756277 eV Total energy + Delta-G solvation = -4342.597161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.58952 -48.33216 -48.17127 -40.27174 -38.59898 -37.10766 -34.00428 -32.25914 -31.18011 -28.93287 -27.06230 -26.55651 -26.17126 -25.58556 -23.30648 -22.73843 -21.59160 -19.77154 -19.29653 -19.28983 -18.21688 -17.23587 -16.50146 -16.41223 -15.62474 -15.33753 -15.04216 -14.81653 -14.66613 -14.59234 -14.51049 -14.40808 -14.24557 -14.23723 -14.19873 -13.43930 -13.20082 -13.13529 -12.95100 -12.80705 -12.37331 -12.11395 -12.02563 -11.23777 -11.07336 -11.06906 -10.87516 -10.70284 -10.43555 -10.28335 -10.01613 -9.64292 -9.26804 -9.15180 -8.98036 -8.41637 -7.21961 -6.05800 -4.06864 1.21362 1.40702 1.41471 2.73399 3.26421 3.34834 3.37031 3.60620 3.62408 3.65336 3.89771 4.40893 4.65968 4.67612 5.01168 5.19871 5.30124 5.36104 5.41441 5.52559 5.68156 5.76492 5.84408 6.07684 6.10932 6.14575 6.18775 6.26086 6.31700 6.35440 6.58254 6.58812 6.78868 6.98241 7.01670 7.04884 7.41866 7.56336 7.68568 7.85620 7.92820 8.35025 8.97983 9.56732 11.05726 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.002355 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.646551 B =11887.453894 C =12496.073685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.734 5.734 15 C 0.216 3.784 16 C -0.162 4.162 17 C -0.133 4.133 18 C 0.022 3.978 19 O -0.313 6.313 20 C 0.602 3.398 21 F -0.168 7.168 22 F -0.138 7.138 23 F -0.168 7.168 24 C -0.070 4.070 25 C -0.172 4.172 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.400 0.600 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 0.058 22.010 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.362 5.362 15 C 0.109 3.891 16 C -0.185 4.185 17 C -0.153 4.153 18 C -0.021 4.021 19 O -0.233 6.233 20 C 0.511 3.489 21 F -0.150 7.150 22 F -0.119 7.119 23 F -0.150 7.150 24 C -0.089 4.089 25 C -0.195 4.195 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.236 0.764 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.078 -0.119 21.852 21.852 hybrid contribution -0.206 0.290 -0.999 1.061 sum -0.128 0.172 20.852 20.854 Atomic orbital electron populations 1.21749 0.95249 1.01114 1.00263 1.20857 0.95493 0.95861 0.94846 1.21749 1.00457 0.95905 1.00264 1.19099 0.96283 0.95194 0.89618 1.21214 1.31121 1.12072 0.90496 0.92223 1.25014 0.95295 0.95072 0.99128 1.69968 1.37004 1.23068 1.23391 0.86591 0.78630 0.79699 0.83404 1.19798 1.21097 1.21103 1.21661 0.98245 0.95866 0.83697 1.45123 1.56325 1.32630 1.02120 1.17974 0.92743 0.92382 0.85969 1.20515 1.02869 0.97925 0.97202 1.21227 1.01445 1.00511 0.92075 1.18340 1.04501 0.98640 0.80596 1.86362 1.65497 1.40771 1.30715 1.19369 0.76550 0.78391 0.74545 1.93296 1.46157 1.93660 1.81863 1.93279 1.93923 1.91450 1.33283 1.93296 1.81444 1.58397 1.81847 1.20031 0.97224 0.93769 0.97864 1.20398 1.06155 1.02847 0.90131 0.95171 0.91506 0.93427 0.93426 0.91506 0.95170 0.96399 0.96402 0.93068 0.92430 0.92432 0.76351 0.84891 0.85384 0.84919 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.85 16 2 C -0.07 -1.25 0.54 -154.51 -0.08 -1.34 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.85 16 4 C 0.04 0.83 4.04 -27.89 -0.11 0.72 16 5 C -0.51 -13.22 7.65 -34.44 -0.26 -13.49 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.13 1.99 3.80 -4.04 -0.02 1.98 16 14 N -0.73 -9.60 5.15 -58.58 -0.30 -9.90 16 15 C 0.22 2.73 6.66 -83.70 -0.56 2.18 16 16 C -0.16 -2.10 9.31 -39.40 -0.37 -2.46 16 17 C -0.13 -1.64 8.25 -39.46 -0.33 -1.97 16 18 C 0.02 0.27 6.48 -39.24 -0.25 0.02 16 19 O -0.31 -3.60 10.38 -19.74 -0.20 -3.80 16 20 C 0.60 6.27 3.42 101.05 0.35 6.62 16 21 F -0.17 -1.78 15.56 2.25 0.04 -1.75 16 22 F -0.14 -1.34 17.53 2.25 0.04 -1.30 16 23 F -0.17 -1.78 15.56 2.25 0.04 -1.75 16 24 C -0.07 -0.75 9.98 -39.46 -0.39 -1.14 16 25 C -0.17 -1.88 9.89 -39.40 -0.39 -2.27 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 27 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 31 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.06 0.91 7.96 -51.93 -0.41 0.50 16 36 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 37 H 0.40 4.82 6.18 -40.82 -0.25 4.57 16 38 H 0.13 1.70 6.73 -52.48 -0.35 1.35 16 39 H 0.13 1.46 5.09 -52.49 -0.27 1.20 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -27.63 343.42 -6.49 -34.12 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.07 Total: 1.90 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.92 Total: -13.43 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.43 Total: -35.01 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.20 Total: -3.80 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.11 Total: -4.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.63 -6.49 -34.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155633290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.084 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds