Wall clock time and date at job start Tue Mar 31 2020 11:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47485 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46928 * 119.99926 * 9 7 5 12 12 H 1.48505 * 109.46854 * 239.99744 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.39942 * 119.99708 * 179.97438 * 14 13 2 16 16 C 1.38861 * 120.02154 * 359.73393 * 15 14 13 17 17 C 1.38108 * 119.98073 * 179.74205 * 16 15 14 18 18 C 1.38696 * 120.01722 * 0.50378 * 17 16 15 19 19 O 1.36001 * 119.98124 * 179.75062 * 18 17 16 20 20 C 1.42905 * 116.99906 * 0.02562 * 19 18 17 21 21 F 1.39902 * 109.46955 * 60.00371 * 20 19 18 22 22 F 1.39893 * 109.47122 * 180.02562 * 20 19 18 23 23 F 1.39903 * 109.47056 * 300.00191 * 20 19 18 24 24 C 1.38702 * 120.04020 * 359.76690 * 18 17 16 25 25 C 1.38111 * 120.01708 * 359.97438 * 24 18 17 26 26 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 27 27 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 28 28 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 31 31 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 32 32 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 34 34 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 38 38 H 1.08006 * 120.00671 * 359.97438 * 16 15 14 39 39 H 1.07998 * 119.98584 * 180.22997 * 17 16 15 40 40 H 1.08001 * 119.99057 * 179.97438 * 24 18 17 41 41 H 1.07997 * 120.00629 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 0.4238 1.5655 -4.8532 11 1 2.4037 0.8643 -6.0656 12 1 0.4227 -0.5345 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8892 -0.5088 3.7165 16 6 2.6825 -1.6413 3.8445 17 6 3.0195 -2.1096 5.0993 18 6 2.5573 -1.4551 6.2314 19 8 2.8855 -1.9198 7.4667 20 6 3.7097 -3.0858 7.5233 21 9 4.9267 -2.8282 6.8830 22 9 3.9478 -3.4242 8.8596 23 9 3.0611 -4.1469 6.8825 24 6 1.7602 -0.3271 6.1045 25 6 1.4266 0.1457 4.8504 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2493 33 1 1.6767 -1.7489 -1.2491 34 1 2.8610 -1.8832 -4.7335 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7580 2.3564 38 1 3.0388 -2.1536 2.9630 39 1 3.6396 -2.9882 5.1989 40 1 1.4004 0.1817 6.9866 41 1 0.8056 1.0238 4.7518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155633290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:47 Heat of formation + Delta-G solvation = -198.477600 kcal Electronic energy + Delta-G solvation = -26265.972466 eV Core-core repulsion = 21922.756277 eV Total energy + Delta-G solvation = -4343.216190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.42337 -49.14745 -49.01928 -41.18680 -39.71416 -38.33842 -35.37188 -34.05531 -32.07948 -30.09897 -28.79841 -27.94695 -27.31242 -26.62301 -24.89250 -23.78621 -22.67427 -20.64660 -20.24412 -20.13054 -19.54107 -18.35802 -18.30016 -17.41188 -16.72563 -16.49583 -16.20302 -15.86658 -15.77343 -15.64213 -15.46943 -15.38960 -15.32958 -15.12715 -15.11485 -14.66532 -14.44623 -14.31123 -14.22656 -13.93707 -13.92073 -13.38545 -13.29377 -12.85899 -12.68710 -12.55400 -12.32899 -12.23702 -11.98250 -11.85473 -11.53651 -10.96775 -10.82576 -10.72685 -10.51694 -10.04097 -8.21472 -8.14770 -6.21429 0.31615 0.47578 0.56393 1.40426 1.42334 1.53201 1.88731 2.41693 2.55700 2.72344 2.82342 3.04074 3.20194 3.75098 3.79505 4.00035 4.12590 4.16857 4.26319 4.34436 4.50467 4.69427 4.75987 4.77280 4.88440 4.99234 4.99310 5.13715 5.14864 5.23454 5.32641 5.44982 5.47763 5.51320 5.54122 5.56621 5.82318 5.87299 5.90996 6.28256 6.39068 6.89529 6.94490 7.46201 8.97694 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028870 B = 0.002355 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.646551 B =11887.453894 C =12496.073685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.069 0.931 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.954 3.046 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.144 3.856 14 N -0.729 5.729 15 C 0.202 3.798 16 C -0.178 4.178 17 C -0.143 4.143 18 C 0.015 3.985 19 O -0.315 6.315 20 C 0.606 3.394 21 F -0.169 7.169 22 F -0.132 7.132 23 F -0.169 7.169 24 C -0.068 4.068 25 C -0.161 4.161 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.066 0.934 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.259 0.741 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.408 0.592 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.160 0.840 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 1.945 23.633 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.087 0.913 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.780 3.220 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.020 3.980 14 N -0.359 5.359 15 C 0.097 3.903 16 C -0.201 4.201 17 C -0.162 4.162 18 C -0.028 4.028 19 O -0.236 6.236 20 C 0.515 3.485 21 F -0.151 7.151 22 F -0.114 7.114 23 F -0.152 7.152 24 C -0.087 4.087 25 C -0.183 4.183 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.246 0.754 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.177 0.823 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.267 1.785 23.507 23.609 hybrid contribution 0.237 -0.337 -1.392 1.452 sum -1.029 1.448 22.115 22.186 Atomic orbital electron populations 1.21673 0.94059 1.00837 1.01218 1.20657 0.96329 0.96121 0.93271 1.21673 0.99868 0.95026 1.01218 1.18978 0.94373 0.94233 0.92213 1.21628 1.30193 1.11949 0.91266 0.91332 1.25897 0.95745 0.95879 1.02560 1.70108 1.38821 1.24912 1.23990 0.85550 0.78067 0.78841 0.79521 1.18307 1.21049 1.21056 1.21249 0.97609 0.95328 0.83850 1.44806 1.56870 1.32852 1.01403 1.18110 0.93321 0.92678 0.86195 1.20559 1.03708 0.98616 0.97240 1.21281 1.01858 1.00887 0.92159 1.18586 1.04625 0.99068 0.80536 1.86354 1.65633 1.41059 1.30518 1.19307 0.76363 0.78161 0.74701 1.93294 1.46232 1.93664 1.81955 1.93293 1.93867 1.91371 1.32842 1.93294 1.81486 1.58434 1.81939 1.20388 0.96283 0.93138 0.98860 1.20695 1.05302 1.03041 0.89269 0.91499 0.93147 0.94363 0.94363 0.93147 0.91499 0.99308 0.99309 0.93189 0.93343 0.93338 0.75403 0.85790 0.85239 0.82269 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 2 C -0.06 -2.25 0.54 -52.18 -0.03 -2.27 16 3 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 4 C 0.04 1.92 4.04 29.85 0.12 2.05 16 5 C -0.51 -26.89 7.65 25.60 0.20 -26.69 16 6 H 0.07 3.42 5.68 -2.91 -0.02 3.40 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.94 -55.79 13.29 21.45 0.28 -55.51 16 9 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 C 0.14 4.43 3.80 86.38 0.33 4.76 16 14 N -0.73 -17.51 5.15 -339.25 -1.75 -19.26 16 15 C 0.20 4.71 6.66 38.14 0.25 4.97 16 16 C -0.18 -4.52 9.31 22.39 0.21 -4.31 16 17 C -0.14 -3.41 8.25 22.35 0.18 -3.22 16 18 C 0.02 0.33 6.48 22.49 0.15 0.48 16 19 O -0.32 -6.70 10.38 -93.56 -0.97 -7.67 16 20 C 0.61 11.94 3.42 113.37 0.39 12.33 16 21 F -0.17 -3.47 15.56 44.97 0.70 -2.77 16 22 F -0.13 -2.40 17.53 44.97 0.79 -1.61 16 23 F -0.17 -3.47 15.56 44.97 0.70 -2.77 16 24 C -0.07 -1.24 9.98 22.35 0.22 -1.02 16 25 C -0.16 -2.95 9.89 22.39 0.22 -2.73 16 26 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 27 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.05 1.80 6.62 -2.39 -0.02 1.78 16 31 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.05 1.57 7.96 -2.38 -0.02 1.55 16 36 H 0.05 1.57 7.94 -2.39 -0.02 1.55 16 37 H 0.41 8.37 6.18 -92.71 -0.57 7.79 16 38 H 0.12 3.27 6.73 -2.91 -0.02 3.26 16 39 H 0.13 2.95 5.09 -2.91 -0.01 2.93 16 40 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -60.52 343.42 6.15 -54.38 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.50 Total: 12.20 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 3.86 Total: -22.10 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.46 Total: -74.76 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.97 Total: -7.67 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 2.19 Total: -7.15 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -60.52 6.15 -54.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155633290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.102 kcal (2) G-P(sol) polarization free energy of solvation -60.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds