Wall clock time and date at job start Tue Mar 31 2020 10:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.80505 * 2 1 4 4 C 1.34773 * 120.00559 * 300.70697 * 3 2 1 5 5 O 1.21726 * 119.99759 * 359.97438 * 4 3 2 6 6 C 1.46254 * 120.00153 * 179.97438 * 4 3 2 7 7 C 1.35027 * 119.99655 * 179.97438 * 6 4 3 8 8 C 1.46961 * 119.99670 * 179.97438 * 7 6 4 9 9 C 1.40016 * 120.10179 * 180.02562 * 8 7 6 10 10 C 1.37596 * 119.90242 * 180.02562 * 9 8 7 11 11 C 1.39179 * 120.09969 * 359.97438 * 10 9 8 12 12 O 1.35567 * 119.90111 * 179.97438 * 11 10 9 13 13 C 1.34781 * 116.99886 * 5.55515 * 12 11 10 14 14 H 1.08001 * 119.99773 * 354.93691 * 13 12 11 15 15 C 1.38713 * 120.00167 * 174.94309 * 13 12 11 16 16 N 1.31512 * 119.99825 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00360 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46824 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47075 * 119.99793 * 17 15 13 20 20 H 1.48499 * 109.47673 * 240.00047 * 17 15 13 21 21 C 1.39181 * 120.19831 * 0.25968 * 11 10 9 22 22 C 1.37596 * 120.10703 * 359.48463 * 21 11 10 23 23 C 1.54808 * 110.90825 * 123.63441 * 2 1 3 24 24 C 1.54200 * 104.14164 * 139.10510 * 23 2 1 25 25 O 1.43735 * 107.30439 * 2.01871 * 24 23 2 26 26 C 1.44374 * 106.97750 * 333.49432 * 25 24 23 27 27 H 1.08997 * 109.47176 * 59.29429 * 1 2 3 28 28 H 1.09002 * 109.47143 * 179.29425 * 1 2 3 29 29 H 1.08996 * 109.47025 * 299.29565 * 1 2 3 30 30 H 0.97010 * 119.99354 * 120.69896 * 3 2 1 31 31 H 1.07998 * 120.00038 * 359.97438 * 6 4 3 32 32 H 1.07997 * 120.00278 * 0.02562 * 7 6 4 33 33 H 1.08007 * 120.05037 * 0.03965 * 9 8 7 34 34 H 1.08000 * 119.95284 * 180.02562 * 10 9 8 35 35 H 0.97000 * 119.99903 * 179.97438 * 16 15 13 36 36 H 1.08008 * 119.94336 * 179.74070 * 21 11 10 37 37 H 1.07991 * 120.05463 * 180.27298 * 22 21 11 38 38 H 1.09002 * 110.49000 * 257.78898 * 23 2 1 39 39 H 1.09000 * 110.48561 * 20.43555 * 23 2 1 40 40 H 1.09003 * 109.86708 * 242.59193 * 24 23 2 41 41 H 1.09007 * 110.00173 * 121.52488 * 24 23 2 42 42 H 1.08995 * 110.61681 * 281.55576 * 26 25 24 43 43 H 1.09001 * 110.75492 * 158.62117 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0504 1.3695 0.0000 4 6 1.7326 2.2112 -1.0035 5 8 1.0136 1.8334 -1.9101 6 6 2.2517 3.5785 -1.0031 7 6 1.9337 4.4216 -2.0088 8 6 2.4549 5.7957 -2.0081 9 6 2.1261 6.6719 -3.0495 10 6 2.6167 7.9574 -3.0451 11 6 3.4382 8.3874 -2.0071 12 8 3.9198 9.6546 -2.0070 13 6 3.4740 10.4787 -2.9759 14 1 2.8292 10.0979 -3.7542 15 6 3.8434 11.8157 -2.9736 16 7 4.6283 12.2794 -2.0257 17 14 3.2262 12.9577 -4.3169 18 1 2.3644 12.1963 -5.2565 19 1 2.4395 14.0597 -3.7069 20 1 4.3832 13.5250 -5.0548 21 6 3.7716 7.5184 -0.9723 22 6 3.2814 6.2327 -0.9657 23 6 2.0825 -0.8010 1.2040 24 6 3.2728 -1.5875 0.6190 25 8 3.3944 -1.2134 -0.7635 26 6 2.0831 -0.8018 -1.2057 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0127 29 1 -0.3633 0.5028 0.8962 30 1 2.6236 1.6704 0.7224 31 1 2.8893 3.9138 -0.1985 32 1 1.2958 4.0864 -2.8131 33 1 1.4882 6.3393 -3.8551 34 1 2.3633 8.6341 -3.8478 35 1 4.8869 13.2142 -2.0243 36 1 4.4129 7.8551 -0.1710 37 1 3.5371 5.5606 -0.1600 38 1 2.4204 -0.1249 1.9894 39 1 1.3248 -1.4843 1.5876 40 1 3.0841 -2.6582 0.6981 41 1 4.1875 -1.3322 1.1540 42 1 1.4566 -1.6702 -1.4091 43 1 2.1550 -0.1665 -2.0885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157471307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:56 Heat of formation + Delta-G solvation = -68.743191 kcal Electronic energy + Delta-G solvation = -24995.663804 eV Core-core repulsion = 21199.930061 eV Total energy + Delta-G solvation = -3795.733743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67235 -39.23032 -38.65233 -36.89545 -35.01756 -33.24122 -32.36758 -31.70834 -30.43531 -30.05306 -28.12901 -26.57469 -25.69941 -23.86073 -22.92728 -22.18991 -21.17416 -19.97691 -19.32894 -18.19415 -17.30541 -17.08145 -16.81059 -16.16324 -15.82229 -15.03387 -14.85919 -14.69332 -14.59515 -14.39374 -13.93320 -13.81760 -13.61631 -13.32371 -13.06105 -13.04448 -12.60932 -12.53121 -12.13720 -11.97018 -11.93502 -11.76813 -11.71125 -11.63023 -11.16005 -11.12914 -11.03877 -10.66169 -10.53568 -10.03782 -9.66683 -9.60232 -9.50129 -9.12633 -8.85876 -8.38819 -7.12014 -6.65986 -4.20739 1.06119 2.13047 2.54326 3.03015 3.04278 3.09828 3.10093 3.51419 3.68666 3.81576 3.98447 4.45130 4.50219 4.53555 4.66615 4.91664 4.93467 5.00770 5.03979 5.22130 5.25993 5.29753 5.33508 5.39946 5.45487 5.52567 5.58882 5.62952 5.66435 5.71058 6.00590 6.01304 6.11523 6.37803 6.45487 6.47129 6.57653 6.61950 6.78617 6.91559 7.12561 7.23132 7.27563 7.52990 7.63389 7.79591 8.31734 8.78963 9.45982 10.50720 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037188 B = 0.001970 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.746396 B =14209.616803 C =14537.336594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 N -0.718 5.718 4 C 0.560 3.440 5 O -0.556 6.556 6 C -0.284 4.284 7 C 0.040 3.960 8 C -0.199 4.199 9 C -0.035 4.035 10 C -0.242 4.242 11 C 0.167 3.833 12 O -0.162 6.162 13 C -0.392 4.392 14 H 0.098 0.902 15 C 0.041 3.959 16 N -0.852 5.852 17 Si 0.945 3.055 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.200 4.200 22 C -0.043 4.043 23 C -0.158 4.158 24 C 0.045 3.955 25 O -0.374 6.374 26 C 0.042 3.958 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.401 0.599 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.274 0.726 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 -21.777 5.983 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 N -0.370 5.370 4 C 0.353 3.647 5 O -0.437 6.437 6 C -0.305 4.305 7 C 0.020 3.980 8 C -0.200 4.200 9 C -0.053 4.053 10 C -0.262 4.262 11 C 0.111 3.889 12 O -0.063 6.063 13 C -0.468 4.468 14 H 0.115 0.885 15 C -0.165 4.165 16 N -0.485 5.485 17 Si 0.769 3.231 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.219 4.219 22 C -0.061 4.061 23 C -0.196 4.196 24 C -0.032 4.032 25 O -0.293 6.293 26 C -0.036 4.036 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.236 0.764 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.149 0.851 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.462 -21.673 5.444 23.004 hybrid contribution -0.144 0.731 -0.031 0.746 sum -5.606 -20.942 5.414 22.345 Atomic orbital electron populations 1.22080 0.92871 1.02481 1.04116 1.21705 0.94781 0.82646 0.95052 1.45829 1.52989 1.11375 1.26809 1.18382 0.79573 0.85822 0.80930 1.90727 1.38440 1.78174 1.36387 1.22419 1.10561 0.93489 1.04019 1.22278 0.90276 0.90913 0.94517 1.18464 1.08144 0.93848 0.99584 1.20987 0.95850 0.92582 0.95875 1.21104 1.05820 0.97305 1.01938 1.19617 0.90485 0.86151 0.92686 1.83903 1.57334 1.16332 1.48769 1.21526 1.31048 0.89563 1.04665 0.88472 1.25404 0.96219 0.96518 0.98388 1.70024 1.31255 1.15854 1.31316 0.85578 0.78764 0.79489 0.79249 1.18850 1.19914 1.19912 1.20151 1.07831 0.93795 1.00115 1.20879 0.94467 0.94343 0.96392 1.23300 0.98790 0.99626 0.97900 1.23182 0.98470 0.98350 0.83229 1.88923 1.29418 1.86243 1.24687 1.24001 0.83892 0.97481 0.98188 0.89685 0.91765 0.92147 0.76443 0.85968 0.85915 0.86813 0.85110 0.91643 0.86138 0.86436 0.89701 0.89137 0.92273 0.89760 0.91473 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.45 37.16 0.31 -1.09 16 2 C 0.15 1.33 0.93 -129.81 -0.12 1.21 16 3 N -0.72 -7.33 5.18 -47.17 -0.24 -7.57 16 4 C 0.56 7.51 7.11 -13.04 -0.09 7.42 16 5 O -0.56 -8.88 13.01 5.17 0.07 -8.82 16 6 C -0.28 -3.81 9.41 -37.50 -0.35 -4.16 16 7 C 0.04 0.60 9.45 -37.19 -0.35 0.25 16 8 C -0.20 -3.38 5.87 -105.03 -0.62 -4.00 16 9 C -0.03 -0.61 9.78 -39.15 -0.38 -1.00 16 10 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 11 C 0.17 3.83 6.66 -38.88 -0.26 3.58 16 12 O -0.16 -4.40 9.74 0.75 0.01 -4.40 16 13 C -0.39 -10.41 9.48 30.91 0.29 -10.12 16 14 H 0.10 2.37 5.18 -52.49 -0.27 2.10 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 16 N -0.85 -23.81 13.67 55.48 0.76 -23.06 16 17 Si 0.95 19.51 29.55 -169.99 -5.02 14.49 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.20 -3.99 9.97 -39.47 -0.39 -4.38 16 22 C -0.04 -0.72 9.40 -39.14 -0.37 -1.09 16 23 C -0.16 -0.99 6.30 -25.15 -0.16 -1.15 16 24 C 0.04 0.33 7.70 37.78 0.29 0.62 16 25 O -0.37 -4.23 11.52 -35.23 -0.41 -4.64 16 26 C 0.04 0.44 6.59 38.21 0.25 0.70 16 27 H 0.08 0.99 6.21 -51.93 -0.32 0.67 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.40 3.20 8.27 -40.82 -0.34 2.86 16 31 H 0.12 1.43 6.07 -52.49 -0.32 1.11 16 32 H 0.12 1.82 7.52 -52.49 -0.39 1.42 16 33 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 37 H 0.12 1.63 6.16 -52.49 -0.32 1.30 16 38 H 0.08 0.43 7.76 -51.93 -0.40 0.03 16 39 H 0.09 0.43 7.86 -51.93 -0.41 0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 43 H 0.11 1.40 6.58 -51.93 -0.34 1.06 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -30.91 357.99 -7.35 -38.26 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.50 Total: 7.95 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.40 Total: -17.62 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.51 Total: -30.63 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.33 Total: -17.85 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.91 -7.35 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157471307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.479 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds