Wall clock time and date at job start Tue Mar 31 2020 10:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.80505 * 2 1 4 4 C 1.34773 * 120.00559 * 300.70697 * 3 2 1 5 5 O 1.21726 * 119.99759 * 359.97438 * 4 3 2 6 6 C 1.46254 * 120.00153 * 179.97438 * 4 3 2 7 7 C 1.35027 * 119.99655 * 179.97438 * 6 4 3 8 8 C 1.46961 * 119.99670 * 179.97438 * 7 6 4 9 9 C 1.40016 * 120.10179 * 180.02562 * 8 7 6 10 10 C 1.37596 * 119.90242 * 180.02562 * 9 8 7 11 11 C 1.39179 * 120.09969 * 359.97438 * 10 9 8 12 12 O 1.35567 * 119.90111 * 179.97438 * 11 10 9 13 13 C 1.34781 * 116.99886 * 5.55515 * 12 11 10 14 14 H 1.08001 * 119.99773 * 354.93691 * 13 12 11 15 15 C 1.38713 * 120.00167 * 174.94309 * 13 12 11 16 16 N 1.31512 * 119.99825 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00360 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46824 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47075 * 119.99793 * 17 15 13 20 20 H 1.48499 * 109.47673 * 240.00047 * 17 15 13 21 21 C 1.39181 * 120.19831 * 0.25968 * 11 10 9 22 22 C 1.37596 * 120.10703 * 359.48463 * 21 11 10 23 23 C 1.54808 * 110.90825 * 123.63441 * 2 1 3 24 24 C 1.54200 * 104.14164 * 139.10510 * 23 2 1 25 25 O 1.43735 * 107.30439 * 2.01871 * 24 23 2 26 26 C 1.44374 * 106.97750 * 333.49432 * 25 24 23 27 27 H 1.08997 * 109.47176 * 59.29429 * 1 2 3 28 28 H 1.09002 * 109.47143 * 179.29425 * 1 2 3 29 29 H 1.08996 * 109.47025 * 299.29565 * 1 2 3 30 30 H 0.97010 * 119.99354 * 120.69896 * 3 2 1 31 31 H 1.07998 * 120.00038 * 359.97438 * 6 4 3 32 32 H 1.07997 * 120.00278 * 0.02562 * 7 6 4 33 33 H 1.08007 * 120.05037 * 0.03965 * 9 8 7 34 34 H 1.08000 * 119.95284 * 180.02562 * 10 9 8 35 35 H 0.97000 * 119.99903 * 179.97438 * 16 15 13 36 36 H 1.08008 * 119.94336 * 179.74070 * 21 11 10 37 37 H 1.07991 * 120.05463 * 180.27298 * 22 21 11 38 38 H 1.09002 * 110.49000 * 257.78898 * 23 2 1 39 39 H 1.09000 * 110.48561 * 20.43555 * 23 2 1 40 40 H 1.09003 * 109.86708 * 242.59193 * 24 23 2 41 41 H 1.09007 * 110.00173 * 121.52488 * 24 23 2 42 42 H 1.08995 * 110.61681 * 281.55576 * 26 25 24 43 43 H 1.09001 * 110.75492 * 158.62117 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0504 1.3695 0.0000 4 6 1.7326 2.2112 -1.0035 5 8 1.0136 1.8334 -1.9101 6 6 2.2517 3.5785 -1.0031 7 6 1.9337 4.4216 -2.0088 8 6 2.4549 5.7957 -2.0081 9 6 2.1261 6.6719 -3.0495 10 6 2.6167 7.9574 -3.0451 11 6 3.4382 8.3874 -2.0071 12 8 3.9198 9.6546 -2.0070 13 6 3.4740 10.4787 -2.9759 14 1 2.8292 10.0979 -3.7542 15 6 3.8434 11.8157 -2.9736 16 7 4.6283 12.2794 -2.0257 17 14 3.2262 12.9577 -4.3169 18 1 2.3644 12.1963 -5.2565 19 1 2.4395 14.0597 -3.7069 20 1 4.3832 13.5250 -5.0548 21 6 3.7716 7.5184 -0.9723 22 6 3.2814 6.2327 -0.9657 23 6 2.0825 -0.8010 1.2040 24 6 3.2728 -1.5875 0.6190 25 8 3.3944 -1.2134 -0.7635 26 6 2.0831 -0.8018 -1.2057 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0127 29 1 -0.3633 0.5028 0.8962 30 1 2.6236 1.6704 0.7224 31 1 2.8893 3.9138 -0.1985 32 1 1.2958 4.0864 -2.8131 33 1 1.4882 6.3393 -3.8551 34 1 2.3633 8.6341 -3.8478 35 1 4.8869 13.2142 -2.0243 36 1 4.4129 7.8551 -0.1710 37 1 3.5371 5.5606 -0.1600 38 1 2.4204 -0.1249 1.9894 39 1 1.3248 -1.4843 1.5876 40 1 3.0841 -2.6582 0.6981 41 1 4.1875 -1.3322 1.1540 42 1 1.4566 -1.6702 -1.4091 43 1 2.1550 -0.1665 -2.0885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157471307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:55 Heat of formation + Delta-G solvation = -89.436944 kcal Electronic energy + Delta-G solvation = -24996.561153 eV Core-core repulsion = 21199.930061 eV Total energy + Delta-G solvation = -3796.631092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52509 -40.83446 -39.64629 -38.47219 -35.89878 -34.73523 -34.02525 -32.61003 -31.96594 -30.71032 -29.53678 -27.52408 -27.29868 -25.06186 -23.84374 -23.57385 -22.36220 -20.91734 -20.61220 -19.74661 -18.85920 -18.26333 -17.76534 -16.87197 -16.61772 -16.46074 -16.37680 -15.99701 -15.67972 -15.64170 -15.56119 -15.13781 -14.70862 -14.56397 -14.19758 -14.10473 -13.75094 -13.60507 -13.36853 -13.23986 -13.14880 -12.80794 -12.72840 -12.56853 -12.53500 -12.32452 -12.18552 -12.10804 -11.73695 -11.21372 -11.11536 -10.75147 -10.73743 -10.56910 -9.99522 -9.89601 -8.67893 -8.52744 -6.18774 -0.23828 0.58151 1.14040 1.35585 1.44905 1.53524 2.14767 2.22340 2.37897 2.85868 2.97533 3.17670 3.35014 3.42043 3.77935 3.82461 3.94628 3.97447 4.08301 4.16321 4.29139 4.30800 4.34878 4.46827 4.54991 4.66296 4.71326 4.75091 4.78707 4.86405 4.94310 4.96321 5.02547 5.04283 5.19403 5.24966 5.33020 5.34414 5.56639 5.59649 5.63667 5.81797 5.89591 5.97175 6.10328 6.62859 6.91769 7.31021 7.68991 8.69565 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.037188 B = 0.001970 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.746396 B =14209.616803 C =14537.336594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.139 3.861 3 N -0.704 5.704 4 C 0.552 3.448 5 O -0.582 6.582 6 C -0.247 4.247 7 C 0.015 3.985 8 C -0.170 4.170 9 C -0.041 4.041 10 C -0.249 4.249 11 C 0.129 3.871 12 O -0.220 6.220 13 C -0.416 4.416 14 H 0.106 0.894 15 C -0.020 4.020 16 N -0.914 5.914 17 Si 1.019 2.981 18 H -0.251 1.251 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.207 4.207 22 C -0.038 4.038 23 C -0.146 4.146 24 C 0.037 3.963 25 O -0.402 6.402 26 C 0.040 3.960 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.414 0.586 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.275 0.725 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.708 -25.482 7.214 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 N -0.356 5.356 4 C 0.344 3.656 5 O -0.465 6.465 6 C -0.267 4.267 7 C -0.005 4.005 8 C -0.171 4.171 9 C -0.059 4.059 10 C -0.268 4.268 11 C 0.077 3.923 12 O -0.125 6.125 13 C -0.492 4.492 14 H 0.123 0.877 15 C -0.218 4.218 16 N -0.551 5.551 17 Si 0.838 3.162 18 H -0.174 1.174 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.226 4.226 22 C -0.056 4.056 23 C -0.184 4.184 24 C -0.040 4.040 25 O -0.322 6.322 26 C -0.037 4.037 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.252 0.748 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.177 0.823 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.744 -25.468 6.705 27.185 hybrid contribution 0.134 1.170 -0.252 1.204 sum -6.609 -24.298 6.453 25.994 Atomic orbital electron populations 1.22031 0.92534 1.03566 1.02985 1.21875 0.95018 0.81915 0.95980 1.45782 1.52162 1.11569 1.26042 1.18464 0.79573 0.86212 0.81368 1.90741 1.39532 1.78647 1.37566 1.22790 1.07812 0.93037 1.03100 1.22158 0.92182 0.90074 0.96055 1.18795 1.05631 0.94450 0.98253 1.21313 0.95934 0.91432 0.97174 1.21202 1.05765 0.98549 1.01318 1.20188 0.91890 0.85699 0.94482 1.83884 1.60273 1.18059 1.50266 1.21934 1.31712 0.90298 1.05207 0.87716 1.26618 0.96352 0.97921 1.00936 1.70155 1.34337 1.16309 1.34261 0.84519 0.78392 0.77065 0.76204 1.17414 1.19301 1.19309 1.20422 1.07975 0.94677 0.99540 1.21280 0.93384 0.93544 0.97363 1.23300 0.98687 0.99635 0.96765 1.23431 0.99592 0.99474 0.81459 1.88892 1.29772 1.86551 1.26975 1.23943 0.84238 0.97806 0.97733 0.92720 0.89657 0.91277 0.74832 0.83371 0.85673 0.83823 0.85786 0.91593 0.85931 0.82328 0.87916 0.86934 0.90867 0.88734 0.90157 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.45 71.98 0.61 -1.65 16 2 C 0.14 2.07 0.93 4.91 0.00 2.07 16 3 N -0.70 -11.78 5.18 -421.36 -2.18 -13.96 16 4 C 0.55 13.08 7.11 86.33 0.61 13.70 16 5 O -0.58 -17.53 13.01 -4.43 -0.06 -17.59 16 6 C -0.25 -5.59 9.41 23.62 0.22 -5.37 16 7 C 0.02 0.40 9.45 23.82 0.23 0.63 16 8 C -0.17 -5.32 5.87 -20.13 -0.12 -5.44 16 9 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 10 C -0.25 -10.51 9.14 22.34 0.20 -10.30 16 11 C 0.13 6.19 6.66 22.72 0.15 6.34 16 12 O -0.22 -12.76 9.74 -20.23 -0.20 -12.96 16 13 C -0.42 -23.46 9.48 67.93 0.64 -22.82 16 14 H 0.11 5.42 5.18 -2.91 -0.02 5.40 16 15 C -0.02 -1.08 5.49 84.85 0.47 -0.62 16 16 N -0.91 -54.49 13.67 21.62 0.30 -54.19 16 17 Si 1.02 41.65 29.55 68.60 2.03 43.68 16 18 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 C -0.21 -8.28 9.97 22.34 0.22 -8.05 16 22 C -0.04 -1.19 9.40 22.55 0.21 -0.98 16 23 C -0.15 -1.16 6.30 31.62 0.20 -0.96 16 24 C 0.04 0.41 7.70 72.39 0.56 0.97 16 25 O -0.40 -8.20 11.52 -148.98 -1.72 -9.91 16 26 C 0.04 0.78 6.59 72.67 0.48 1.26 16 27 H 0.05 1.17 6.21 -2.39 -0.01 1.16 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.41 4.66 8.27 -92.70 -0.77 3.89 16 31 H 0.15 2.58 6.07 -2.91 -0.02 2.56 16 32 H 0.13 3.37 7.52 -2.91 -0.02 3.35 16 33 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.12 5.30 5.62 -2.91 -0.02 5.28 16 35 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.16 3.61 6.16 -2.92 -0.02 3.59 16 38 H 0.10 0.49 7.76 -2.39 -0.02 0.47 16 39 H 0.11 0.47 7.86 -2.39 -0.02 0.45 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 43 H 0.07 1.92 6.58 -2.39 -0.02 1.91 16 Total: -1.00 -73.74 357.99 3.37 -70.38 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.28 Total: 26.93 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 4.91 Total: -32.38 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.89 Total: -68.15 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.97 Total: -40.46 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -73.74 3.37 -70.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157471307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.059 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds