Wall clock time and date at job start Tue Mar 31 2020 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46800 * 2 1 4 4 H 1.09001 * 109.47114 * 55.11356 * 3 2 1 5 5 N 1.46495 * 109.47506 * 295.10877 * 3 2 1 6 6 C 1.38864 * 120.00100 * 157.16844 * 5 3 2 7 7 C 1.39563 * 119.84140 * 177.22579 * 6 5 3 8 8 C 1.36339 * 120.16051 * 180.02562 * 7 6 5 9 9 C 1.40884 * 119.83528 * 0.25658 * 8 7 6 10 10 C 1.41134 * 120.15758 * 179.72455 * 9 8 7 11 11 H 1.08003 * 120.00407 * 208.35273 * 10 9 8 12 12 C 1.39869 * 120.00262 * 28.35250 * 10 9 8 13 13 N 1.30905 * 119.99647 * 11.39026 * 12 10 9 14 14 Si 1.86796 * 120.00580 * 191.38889 * 12 10 9 15 15 H 1.48497 * 109.47440 * 89.99864 * 14 12 10 16 16 H 1.48502 * 109.47045 * 210.00262 * 14 12 10 17 17 H 1.48502 * 109.46790 * 330.00113 * 14 12 10 18 18 C 1.40889 * 119.69046 * 359.44293 * 9 8 7 19 19 C 1.36342 * 119.83369 * 0.55670 * 18 9 8 20 20 C 1.50706 * 109.46786 * 175.11269 * 3 2 1 21 21 C 1.38225 * 119.99099 * 93.93080 * 20 3 2 22 22 C 1.38183 * 120.05253 * 179.97438 * 21 20 3 23 23 C 1.38492 * 120.02487 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.01339 * 179.97438 * 23 22 21 25 25 C 1.38395 * 119.97471 * 359.97438 * 23 22 21 26 26 C 1.38444 * 119.95059 * 359.76817 * 25 23 22 27 27 F 1.35101 * 120.01366 * 180.22911 * 26 25 23 28 28 H 1.09003 * 109.47083 * 185.12073 * 1 2 3 29 29 H 1.08998 * 109.46891 * 305.10988 * 1 2 3 30 30 H 1.08996 * 109.47172 * 65.11723 * 1 2 3 31 31 H 1.09003 * 109.46924 * 240.00330 * 2 1 3 32 32 H 1.08994 * 109.47345 * 120.00846 * 2 1 3 33 33 H 0.96999 * 120.00331 * 337.17143 * 5 3 2 34 34 H 1.08001 * 119.91994 * 0.02562 * 7 6 5 35 35 H 1.08000 * 120.08587 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99926 * 180.02562 * 13 12 10 37 37 H 1.07996 * 120.08467 * 180.27123 * 18 9 8 38 38 H 1.08000 * 119.92082 * 179.71714 * 19 18 9 39 39 H 1.08005 * 119.97112 * 359.97438 * 21 20 3 40 40 H 1.08000 * 119.98864 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.02323 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9810 0.8430 5 7 1.6502 2.0983 -1.2506 6 6 1.5632 3.4829 -1.3108 7 6 1.2482 4.1071 -2.5186 8 6 1.1615 5.4662 -2.5852 9 6 1.3962 6.2408 -1.4320 10 6 1.3141 7.6483 -1.4946 11 1 1.9009 8.2541 -0.8199 12 6 0.4726 8.2589 -2.4303 13 7 -0.3999 7.5417 -3.0920 14 14 0.5939 10.0977 -2.7357 15 1 1.5753 10.3559 -3.8198 16 1 -0.7364 10.6216 -3.1372 17 1 1.0391 10.7776 -1.4928 18 6 1.7075 5.6034 -0.2147 19 6 1.7907 4.2436 -0.1629 20 6 3.5422 1.4442 0.1211 21 6 4.3269 1.4931 -1.0158 22 6 5.7044 1.4953 -0.9062 23 6 6.3003 1.4490 0.3431 24 9 7.6470 1.4506 0.4499 25 6 5.5156 1.4011 1.4821 26 6 4.1356 1.4043 1.3713 27 9 3.3684 1.3623 2.4826 28 1 -0.3633 -1.0236 0.0917 29 1 -0.3633 0.5911 0.8407 30 1 -0.3633 0.4324 -0.9322 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8898 33 1 1.4528 1.5654 -2.0367 34 1 1.0726 3.5122 -3.4027 35 1 0.9181 5.9480 -3.5206 36 1 -0.9831 7.9650 -3.7412 37 1 1.8842 6.1908 0.6742 38 1 2.0337 3.7538 0.7685 39 1 3.8630 1.5297 -1.9904 40 1 6.3165 1.5331 -1.7952 41 1 5.9795 1.3654 2.4568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160666661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:02 Heat of formation + Delta-G solvation = -48.680822 kcal Electronic energy + Delta-G solvation = -25870.068248 eV Core-core repulsion = 21964.116959 eV Total energy + Delta-G solvation = -3905.951289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.04193 -48.99554 -39.46685 -37.83890 -36.08777 -33.62965 -31.86874 -30.93137 -30.58316 -29.45225 -28.33657 -25.91193 -24.23618 -23.07111 -22.48587 -21.63853 -20.50920 -19.76595 -18.25396 -17.29832 -17.16623 -16.25691 -16.14612 -15.94317 -15.62284 -15.33169 -15.28103 -14.82514 -14.41941 -14.06505 -13.96201 -13.75724 -13.19654 -12.85317 -12.77750 -12.46931 -12.34582 -12.14857 -11.96406 -11.78186 -11.59200 -11.39528 -11.23760 -11.04691 -10.96034 -10.86055 -10.82904 -10.45608 -9.66282 -9.39852 -9.24619 -9.06948 -8.65736 -8.55016 -7.51063 -6.59765 -6.42692 -4.08257 0.93573 1.01441 2.90025 3.08626 3.15279 3.18817 3.31493 3.35378 3.83878 4.05918 4.10913 4.41572 4.58785 4.62805 4.80153 4.82490 5.00521 5.08755 5.20162 5.34618 5.67640 5.75136 5.76549 5.79517 5.84143 5.90523 5.95376 6.04349 6.08808 6.23807 6.27823 6.30032 6.35407 6.75002 6.82984 7.03618 7.17210 7.30955 7.55052 7.65581 7.77441 8.13874 8.32150 8.42285 8.61758 8.77626 9.05966 9.12895 10.40671 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003597 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.385899 B = 7781.998078 C = 8782.726377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.202 3.798 4 H 0.087 0.913 5 N -0.748 5.748 6 C 0.093 3.907 7 C -0.163 4.163 8 C -0.117 4.117 9 C 0.076 3.924 10 C -0.467 4.467 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.815 5.815 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.184 4.184 19 C -0.157 4.157 20 C -0.131 4.131 21 C -0.036 4.036 22 C -0.164 4.164 23 C 0.119 3.881 24 F -0.137 7.137 25 C -0.195 4.195 26 C 0.130 3.870 27 F -0.131 7.131 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.387 0.613 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.275 0.725 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 -14.655 3.647 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.094 3.906 4 H 0.105 0.895 5 N -0.383 5.383 6 C -0.003 4.003 7 C -0.184 4.184 8 C -0.137 4.137 9 C 0.073 3.927 10 C -0.498 4.498 11 H 0.089 0.911 12 C -0.142 4.142 13 N -0.443 5.443 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.204 4.204 19 C -0.178 4.178 20 C -0.134 4.134 21 C -0.054 4.054 22 C -0.183 4.183 23 C 0.100 3.900 24 F -0.115 7.115 25 C -0.214 4.214 26 C 0.110 3.890 27 F -0.109 7.109 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.220 0.780 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.538 -14.593 3.699 16.413 hybrid contribution 0.119 0.794 -0.136 0.814 sum 6.657 -13.800 3.563 15.730 Atomic orbital electron populations 1.21717 0.94786 1.01115 1.02858 1.21741 0.96824 0.95056 1.02440 1.19469 0.87219 0.93429 0.90456 0.89523 1.43889 1.79967 1.03624 1.10834 1.17295 1.06704 0.81784 0.94510 1.20035 1.08523 0.95337 0.94533 1.20970 1.02092 0.91529 0.99153 1.17510 0.91528 0.93474 0.90219 1.19382 1.22559 0.91815 1.16062 0.91068 1.25772 0.93750 1.00079 0.94555 1.69813 1.15965 1.37459 1.21113 0.86359 0.78081 0.82972 0.79475 1.19621 1.20556 1.18925 1.20616 1.09865 0.92993 0.96960 1.19872 1.08661 0.94149 0.95161 1.20853 0.99128 1.02116 0.91326 1.20740 0.91577 0.94044 0.99082 1.21219 0.95947 1.04753 0.96359 1.17275 0.76862 1.02104 0.93794 1.91506 1.29174 1.93858 1.96987 1.20925 0.92476 1.08534 0.99509 1.17123 0.87748 1.01733 0.82399 1.91508 1.75040 1.93577 1.50814 0.92982 0.92497 0.92028 0.91544 0.91190 0.77989 0.89501 0.86141 0.91417 0.89196 0.89676 0.83825 0.84311 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.74 37.16 0.36 -1.22 16 2 C -0.12 -1.32 5.44 -26.73 -0.15 -1.46 16 3 C 0.20 2.75 1.68 -69.08 -0.12 2.63 16 4 H 0.09 1.36 6.06 -51.93 -0.31 1.04 16 5 N -0.75 -11.44 3.54 -53.16 -0.19 -11.63 16 6 C 0.09 1.88 6.61 -83.69 -0.55 1.33 16 7 C -0.16 -3.58 9.82 -39.77 -0.39 -3.97 16 8 C -0.12 -2.99 8.60 -39.26 -0.34 -3.33 16 9 C 0.08 2.01 5.55 -106.79 -0.59 1.42 16 10 C -0.47 -12.63 9.04 -37.87 -0.34 -12.97 16 11 H 0.07 1.88 7.87 -52.48 -0.41 1.46 16 12 C 0.07 1.87 5.24 -17.34 -0.09 1.77 16 13 N -0.82 -21.52 10.84 55.54 0.60 -20.92 16 14 Si 0.91 19.32 29.57 -169.99 -5.03 14.29 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 C -0.18 -4.53 9.74 -39.26 -0.38 -4.91 16 19 C -0.16 -3.43 9.06 -39.77 -0.36 -3.79 16 20 C -0.13 -1.76 4.83 -104.54 -0.51 -2.27 16 21 C -0.04 -0.46 9.32 -39.61 -0.37 -0.83 16 22 C -0.16 -1.96 10.02 -39.51 -0.40 -2.35 16 23 C 0.12 1.48 7.30 -39.43 -0.29 1.19 16 24 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 25 C -0.19 -2.39 10.01 -39.45 -0.39 -2.79 16 26 C 0.13 1.73 7.24 -39.43 -0.29 1.45 16 27 F -0.13 -1.79 16.54 2.25 0.04 -1.75 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.71 7.89 -51.93 -0.41 0.30 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.39 5.19 8.58 -40.82 -0.35 4.84 16 34 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.09 1.73 6.14 -52.49 -0.32 1.41 16 39 H 0.14 1.75 7.29 -52.48 -0.38 1.36 16 40 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -27.53 351.47 -9.46 -36.99 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.03 Total: 9.48 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -5.19 Total: -30.10 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.41 Total: -32.54 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.53 -9.46 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160666661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.691 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds