Wall clock time and date at job start Tue Mar 31 2020 12:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46800 * 2 1 4 4 H 1.09001 * 109.47114 * 55.11356 * 3 2 1 5 5 N 1.46495 * 109.47506 * 295.10877 * 3 2 1 6 6 C 1.38864 * 120.00100 * 157.16844 * 5 3 2 7 7 C 1.39563 * 119.84140 * 177.22579 * 6 5 3 8 8 C 1.36339 * 120.16051 * 180.02562 * 7 6 5 9 9 C 1.40884 * 119.83528 * 0.25658 * 8 7 6 10 10 C 1.41134 * 120.15758 * 179.72455 * 9 8 7 11 11 H 1.08003 * 120.00407 * 208.35273 * 10 9 8 12 12 C 1.39869 * 120.00262 * 28.35250 * 10 9 8 13 13 N 1.30905 * 119.99647 * 11.39026 * 12 10 9 14 14 Si 1.86796 * 120.00580 * 191.38889 * 12 10 9 15 15 H 1.48497 * 109.47440 * 89.99864 * 14 12 10 16 16 H 1.48502 * 109.47045 * 210.00262 * 14 12 10 17 17 H 1.48502 * 109.46790 * 330.00113 * 14 12 10 18 18 C 1.40889 * 119.69046 * 359.44293 * 9 8 7 19 19 C 1.36342 * 119.83369 * 0.55670 * 18 9 8 20 20 C 1.50706 * 109.46786 * 175.11269 * 3 2 1 21 21 C 1.38225 * 119.99099 * 93.93080 * 20 3 2 22 22 C 1.38183 * 120.05253 * 179.97438 * 21 20 3 23 23 C 1.38492 * 120.02487 * 359.97438 * 22 21 20 24 24 F 1.35099 * 120.01339 * 179.97438 * 23 22 21 25 25 C 1.38395 * 119.97471 * 359.97438 * 23 22 21 26 26 C 1.38444 * 119.95059 * 359.76817 * 25 23 22 27 27 F 1.35101 * 120.01366 * 180.22911 * 26 25 23 28 28 H 1.09003 * 109.47083 * 185.12073 * 1 2 3 29 29 H 1.08998 * 109.46891 * 305.10988 * 1 2 3 30 30 H 1.08996 * 109.47172 * 65.11723 * 1 2 3 31 31 H 1.09003 * 109.46924 * 240.00330 * 2 1 3 32 32 H 1.08994 * 109.47345 * 120.00846 * 2 1 3 33 33 H 0.96999 * 120.00331 * 337.17143 * 5 3 2 34 34 H 1.08001 * 119.91994 * 0.02562 * 7 6 5 35 35 H 1.08000 * 120.08587 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99926 * 180.02562 * 13 12 10 37 37 H 1.07996 * 120.08467 * 180.27123 * 18 9 8 38 38 H 1.08000 * 119.92082 * 179.71714 * 19 18 9 39 39 H 1.08005 * 119.97112 * 359.97438 * 21 20 3 40 40 H 1.08000 * 119.98864 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.02323 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9810 0.8430 5 7 1.6502 2.0983 -1.2506 6 6 1.5632 3.4829 -1.3108 7 6 1.2482 4.1071 -2.5186 8 6 1.1615 5.4662 -2.5852 9 6 1.3962 6.2408 -1.4320 10 6 1.3141 7.6483 -1.4946 11 1 1.9009 8.2541 -0.8199 12 6 0.4726 8.2589 -2.4303 13 7 -0.3999 7.5417 -3.0920 14 14 0.5939 10.0977 -2.7357 15 1 1.5753 10.3559 -3.8198 16 1 -0.7364 10.6216 -3.1372 17 1 1.0391 10.7776 -1.4928 18 6 1.7075 5.6034 -0.2147 19 6 1.7907 4.2436 -0.1629 20 6 3.5422 1.4442 0.1211 21 6 4.3269 1.4931 -1.0158 22 6 5.7044 1.4953 -0.9062 23 6 6.3003 1.4490 0.3431 24 9 7.6470 1.4506 0.4499 25 6 5.5156 1.4011 1.4821 26 6 4.1356 1.4043 1.3713 27 9 3.3684 1.3623 2.4826 28 1 -0.3633 -1.0236 0.0917 29 1 -0.3633 0.5911 0.8407 30 1 -0.3633 0.4324 -0.9322 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8898 33 1 1.4528 1.5654 -2.0367 34 1 1.0726 3.5122 -3.4027 35 1 0.9181 5.9480 -3.5206 36 1 -0.9831 7.9650 -3.7412 37 1 1.8842 6.1908 0.6742 38 1 2.0337 3.7538 0.7685 39 1 3.8630 1.5297 -1.9904 40 1 6.3165 1.5331 -1.7952 41 1 5.9795 1.3654 2.4568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160666661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:01 Heat of formation + Delta-G solvation = -59.880010 kcal Electronic energy + Delta-G solvation = -25870.553881 eV Core-core repulsion = 21964.116959 eV Total energy + Delta-G solvation = -3906.436922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.04012 -50.00987 -40.63828 -39.38212 -37.42303 -35.34164 -33.31875 -31.98462 -31.63410 -31.18467 -30.05638 -27.14540 -25.88744 -24.10109 -23.50046 -23.12061 -22.22532 -21.14801 -19.26144 -19.08556 -18.35766 -17.70244 -17.26121 -16.98721 -16.94093 -16.64469 -16.33398 -16.14353 -15.64069 -15.45944 -15.05739 -14.99966 -14.54140 -14.35088 -14.05238 -13.90586 -13.74360 -13.49351 -13.36866 -13.21982 -12.92588 -12.76138 -12.67721 -12.45960 -12.27879 -12.18250 -11.94233 -11.82662 -11.48084 -11.20554 -11.07057 -10.35348 -10.04090 -9.59257 -9.36542 -8.48146 -8.15562 -6.03108 -0.06625 0.03538 1.11811 1.21772 1.40576 1.52357 1.58912 2.28853 2.34839 2.79195 2.86957 2.88976 3.42136 3.58158 3.66296 3.87651 3.90515 4.04155 4.10739 4.26517 4.42349 4.48468 4.49821 4.72625 4.77389 4.87202 4.89495 4.94952 5.01642 5.07968 5.10622 5.18255 5.20158 5.30365 5.33020 5.44338 5.45865 5.75602 5.77375 5.80015 5.95564 6.20625 6.44070 6.68245 6.87879 7.11254 7.14471 7.32745 8.53040 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003597 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.385899 B = 7781.998078 C = 8782.726377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.202 3.798 4 H 0.067 0.933 5 N -0.733 5.733 6 C 0.128 3.872 7 C -0.169 4.169 8 C -0.133 4.133 9 C 0.035 3.965 10 C -0.506 4.506 11 H 0.062 0.938 12 C 0.031 3.969 13 N -0.847 5.847 14 Si 0.976 3.024 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.265 1.265 18 C -0.195 4.195 19 C -0.165 4.165 20 C -0.139 4.139 21 C -0.044 4.044 22 C -0.160 4.160 23 C 0.112 3.888 24 F -0.137 7.137 25 C -0.193 4.193 26 C 0.117 3.883 27 F -0.136 7.136 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.401 0.599 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.281 0.719 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.313 -16.417 3.361 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.095 3.905 4 H 0.085 0.915 5 N -0.367 5.367 6 C 0.029 3.971 7 C -0.191 4.191 8 C -0.153 4.153 9 C 0.033 3.967 10 C -0.538 4.538 11 H 0.080 0.920 12 C -0.179 4.179 13 N -0.477 5.477 14 Si 0.798 3.202 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.189 1.189 18 C -0.216 4.216 19 C -0.188 4.188 20 C -0.142 4.142 21 C -0.062 4.062 22 C -0.178 4.178 23 C 0.093 3.907 24 F -0.116 7.116 25 C -0.212 4.212 26 C 0.097 3.903 27 F -0.114 7.114 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.169 0.831 40 H 0.177 0.823 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.175 -16.416 3.421 18.239 hybrid contribution -0.005 1.101 0.035 1.102 sum 7.170 -15.315 3.456 17.260 Atomic orbital electron populations 1.21716 0.94738 1.02129 1.01833 1.21707 0.96695 0.92964 1.03835 1.19558 0.87594 0.94824 0.88525 0.91493 1.43854 1.78780 1.01716 1.12360 1.17283 1.02826 0.83901 0.93107 1.20239 1.08234 0.94413 0.96246 1.20906 1.03220 0.93011 0.98158 1.17786 0.93639 0.93949 0.91371 1.19576 1.24071 0.92516 1.17668 0.91974 1.26527 0.92900 1.04593 0.93921 1.69878 1.16663 1.39293 1.21821 0.85300 0.78419 0.77223 0.79270 1.18877 1.19540 1.18872 1.20749 1.10091 0.94316 0.96396 1.20019 1.08866 0.93338 0.96537 1.20813 0.98775 1.02856 0.91776 1.20854 0.91952 0.94317 0.99061 1.21452 0.95914 1.03458 0.97001 1.17391 0.76889 1.02298 0.94115 1.91508 1.29207 1.93878 1.97006 1.21104 0.92143 1.07588 1.00414 1.17224 0.88172 1.02585 0.82273 1.91497 1.75197 1.93717 1.51019 0.90968 0.93781 0.92831 0.89685 0.90218 0.76272 0.86762 0.88038 0.90917 0.89524 0.88069 0.83132 0.82301 0.82227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.74 71.98 0.70 -2.07 16 2 C -0.11 -2.11 5.44 30.60 0.17 -1.94 16 3 C 0.20 5.04 1.68 44.25 0.07 5.12 16 4 H 0.07 1.99 6.06 -2.39 -0.01 1.98 16 5 N -0.73 -20.56 3.54 -322.09 -1.14 -21.71 16 6 C 0.13 4.98 6.61 38.67 0.26 5.24 16 7 C -0.17 -7.33 9.82 22.15 0.22 -7.11 16 8 C -0.13 -6.92 8.60 22.47 0.19 -6.73 16 9 C 0.04 1.95 5.55 -21.27 -0.12 1.83 16 10 C -0.51 -28.63 9.04 23.38 0.21 -28.41 16 11 H 0.06 3.45 7.87 -2.91 -0.02 3.43 16 12 C 0.03 1.65 5.24 85.23 0.45 2.10 16 13 N -0.85 -46.03 10.84 21.82 0.24 -45.79 16 14 Si 0.98 40.49 29.57 68.60 2.03 42.51 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 18 C -0.20 -9.86 9.74 22.48 0.22 -9.64 16 19 C -0.17 -7.19 9.06 22.15 0.20 -6.99 16 20 C -0.14 -3.44 4.83 -19.81 -0.10 -3.54 16 21 C -0.04 -1.00 9.32 22.25 0.21 -0.79 16 22 C -0.16 -3.41 10.02 22.32 0.22 -3.18 16 23 C 0.11 2.56 7.30 22.37 0.16 2.72 16 24 F -0.14 -3.17 17.27 44.97 0.78 -2.39 16 25 C -0.19 -4.37 10.01 22.36 0.22 -4.14 16 26 C 0.12 2.92 7.24 22.37 0.16 3.09 16 27 F -0.14 -3.52 16.54 44.97 0.74 -2.78 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.09 7.89 -2.39 -0.02 1.07 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.40 9.41 8.58 -92.71 -0.80 8.61 16 34 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.10 5.61 6.20 -2.91 -0.02 5.59 16 36 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 37 H 0.09 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.10 4.04 6.14 -2.91 -0.02 4.02 16 39 H 0.15 3.20 7.29 -2.91 -0.02 3.17 16 40 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -61.14 351.47 6.37 -54.77 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.27 Total: 29.84 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 3.45 Total: -54.46 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -0.90 Total: -67.49 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 1.52 Total: -5.17 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -61.14 6.37 -54.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160666661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.111 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds