Wall clock time and date at job start Tue Mar 31 2020 12:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46867 * 2 1 4 4 H 1.08992 * 109.47104 * 305.00038 * 3 2 1 5 5 N 1.46499 * 109.47362 * 65.00281 * 3 2 1 6 6 C 1.38860 * 119.99419 * 275.00026 * 5 3 2 7 7 C 1.39565 * 119.84502 * 359.72612 * 6 5 3 8 8 C 1.36344 * 120.15858 * 179.72140 * 7 6 5 9 9 C 1.40885 * 119.83790 * 0.54923 * 8 7 6 10 10 C 1.41134 * 120.15960 * 179.70163 * 9 8 7 11 11 H 1.07998 * 120.00164 * 204.63260 * 10 9 8 12 12 C 1.39865 * 119.99737 * 24.62693 * 10 9 8 13 13 N 1.30906 * 120.00079 * 17.95872 * 12 10 9 14 14 Si 1.86800 * 120.00279 * 197.95744 * 12 10 9 15 15 H 1.48501 * 109.47039 * 90.00001 * 14 12 10 16 16 H 1.48492 * 109.47366 * 210.00133 * 14 12 10 17 17 H 1.48508 * 109.46974 * 330.00385 * 14 12 10 18 18 C 1.40894 * 119.68744 * 359.72607 * 9 8 7 19 19 C 1.36336 * 119.83566 * 359.97438 * 18 9 8 20 20 C 1.50697 * 109.47162 * 185.00007 * 3 2 1 21 21 C 1.38228 * 119.99068 * 264.99884 * 20 3 2 22 22 C 1.38185 * 120.05729 * 179.97438 * 21 20 3 23 23 C 1.38497 * 120.02055 * 0.02562 * 22 21 20 24 24 F 1.35105 * 120.01112 * 179.97438 * 23 22 21 25 25 C 1.38400 * 119.97672 * 359.97438 * 23 22 21 26 26 C 1.38439 * 119.94647 * 0.02562 * 25 23 22 27 27 F 1.35106 * 120.00976 * 180.02562 * 26 25 23 28 28 H 1.09006 * 109.46505 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46745 * 299.99885 * 1 2 3 30 30 H 1.08995 * 109.46817 * 60.00258 * 1 2 3 31 31 H 1.08995 * 109.47248 * 239.99966 * 2 1 3 32 32 H 1.09002 * 109.47167 * 119.99608 * 2 1 3 33 33 H 0.96992 * 120.00344 * 94.99958 * 5 3 2 34 34 H 1.07994 * 119.91955 * 359.97438 * 7 6 5 35 35 H 1.07998 * 120.08042 * 180.27434 * 8 7 6 36 36 H 0.96993 * 119.99988 * 179.97438 * 13 12 10 37 37 H 1.07997 * 120.07938 * 180.02562 * 18 9 8 38 38 H 1.08002 * 119.91763 * 179.97438 * 19 18 9 39 39 H 1.08009 * 119.97341 * 0.02562 * 21 20 3 40 40 H 1.07998 * 119.99254 * 180.28084 * 22 21 20 41 41 H 1.07997 * 120.02210 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 7 1.6525 2.0975 1.2518 6 6 0.3982 2.6815 1.3704 7 6 -0.4884 2.6476 0.2931 8 6 -1.7236 3.2140 0.4044 9 6 -2.0997 3.8448 1.6067 10 6 -3.3743 4.4388 1.7272 11 1 -3.5336 5.2355 2.4386 12 6 -4.4309 3.9956 0.9251 13 7 -4.3577 2.8319 0.3303 14 14 -5.9467 5.0645 0.7027 15 1 -5.7569 5.9545 -0.4707 16 1 -7.1338 4.2001 0.4815 17 1 -6.1544 5.8885 1.9206 18 6 -1.1973 3.8802 2.6881 19 6 0.0323 3.3043 2.5646 20 6 3.5419 1.4444 -0.1238 21 6 4.3286 1.5149 1.0105 22 6 5.7059 1.5162 0.8986 23 6 6.2996 1.4473 -0.3507 24 9 7.6463 1.4491 -0.4600 25 6 5.5130 1.3767 -1.4873 26 6 4.1333 1.3755 -1.3738 27 9 3.3641 1.3060 -2.4824 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2719 2.1232 1.9977 34 1 -0.1968 2.1679 -0.6296 35 1 -2.4103 3.1832 -0.4286 36 1 -5.0907 2.5244 -0.2256 37 1 -1.4792 4.3617 3.6128 38 1 0.7252 3.3310 3.3926 39 1 3.8664 1.5683 1.9853 40 1 6.3196 1.5668 1.7858 41 1 5.9752 1.3233 -2.4619 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160666771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:06 Heat of formation + Delta-G solvation = -36.914040 kcal Electronic energy + Delta-G solvation = -25718.883483 eV Core-core repulsion = 21813.442440 eV Total energy + Delta-G solvation = -3905.441043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.24000 -49.14032 -39.68862 -38.11359 -35.96993 -33.51209 -31.79041 -31.21716 -30.79912 -29.35946 -28.43307 -25.88102 -24.27299 -23.15462 -22.45409 -21.78581 -20.70139 -19.37761 -18.49104 -17.47597 -17.23270 -16.63126 -16.18268 -16.07796 -15.49602 -15.36860 -15.15271 -14.99140 -14.57829 -14.25965 -13.97384 -13.77055 -13.27151 -12.90020 -12.66677 -12.55286 -12.41628 -12.06689 -12.01112 -11.77377 -11.60086 -11.24510 -11.13869 -11.01817 -10.88065 -10.73255 -10.54358 -10.32433 -9.69598 -9.34502 -9.30290 -9.21072 -8.82426 -8.52277 -7.45848 -6.66388 -6.40812 -4.04932 0.70477 0.75405 2.90132 3.09190 3.10928 3.14922 3.18015 3.33971 3.62364 4.02467 4.05113 4.21096 4.34512 4.48160 4.59298 4.75039 4.94668 5.27254 5.35152 5.48466 5.55562 5.62808 5.71824 5.80438 5.82596 5.87329 6.06389 6.12787 6.22091 6.28521 6.32635 6.50678 6.55817 6.90016 6.93989 6.94536 7.18575 7.34029 7.52643 7.67470 7.81530 8.14077 8.25976 8.45301 8.63694 8.77191 9.05048 9.13395 10.35621 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.002886 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.596405 B = 9698.784058 C =10097.414379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.128 4.128 3 C 0.202 3.798 4 H 0.088 0.912 5 N -0.753 5.753 6 C 0.088 3.912 7 C -0.160 4.160 8 C -0.128 4.128 9 C 0.078 3.922 10 C -0.467 4.467 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.805 5.805 14 Si 0.902 3.098 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.191 4.191 19 C -0.155 4.155 20 C -0.120 4.120 21 C -0.056 4.056 22 C -0.159 4.159 23 C 0.120 3.880 24 F -0.134 7.134 25 C -0.190 4.190 26 C 0.135 3.865 27 F -0.126 7.126 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.382 0.618 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.276 0.724 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.337 -5.183 -2.227 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C 0.095 3.905 4 H 0.106 0.894 5 N -0.390 5.390 6 C -0.008 4.008 7 C -0.181 4.181 8 C -0.148 4.148 9 C 0.075 3.925 10 C -0.498 4.498 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.432 5.432 14 Si 0.727 3.273 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.211 4.211 19 C -0.177 4.177 20 C -0.122 4.122 21 C -0.075 4.075 22 C -0.178 4.178 23 C 0.100 3.900 24 F -0.113 7.113 25 C -0.209 4.209 26 C 0.115 3.885 27 F -0.104 7.104 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.217 0.783 34 H 0.115 0.885 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.153 -5.385 -2.588 17.223 hybrid contribution -0.339 0.350 -0.112 0.500 sum 15.814 -5.035 -2.700 16.814 Atomic orbital electron populations 1.22143 0.94049 1.00892 1.04095 1.22022 0.97760 0.95708 1.01217 1.19445 0.86762 0.93889 0.90370 0.89401 1.43948 1.15802 1.65720 1.13542 1.17246 0.85903 1.02112 0.95551 1.20366 0.95377 1.05665 0.96741 1.20931 0.94393 1.01173 0.98275 1.17503 0.92645 0.91929 0.90419 1.19385 0.93818 1.17595 1.18970 0.90973 1.25788 0.99847 0.94239 0.94149 1.69849 1.32386 1.16080 1.24905 0.86417 0.80531 0.80683 0.79622 1.19549 1.20590 1.18887 1.20515 0.95330 1.07262 0.98018 1.19774 0.97628 1.04971 0.95354 1.20348 0.97873 1.02212 0.91723 1.20693 0.91988 0.96095 0.98686 1.21189 0.95675 1.04391 0.96523 1.17273 0.76987 1.01977 0.93735 1.91524 1.29024 1.93807 1.96942 1.20986 0.92323 1.07811 0.99796 1.17068 0.87743 1.01212 0.82442 1.91548 1.74835 1.93284 1.50739 0.93952 0.89917 0.92314 0.92462 0.92089 0.78274 0.88487 0.86436 0.91315 0.89156 0.89719 0.83871 0.83988 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.22 37.16 0.31 -2.22 16 2 C -0.13 -1.78 5.59 -26.73 -0.15 -1.93 16 3 C 0.20 2.91 2.20 -69.08 -0.15 2.76 16 4 H 0.09 1.43 6.08 -51.93 -0.32 1.11 16 5 N -0.75 -11.97 5.07 -53.16 -0.27 -12.24 16 6 C 0.09 1.78 5.49 -83.69 -0.46 1.32 16 7 C -0.16 -3.52 6.62 -39.77 -0.26 -3.78 16 8 C -0.13 -3.23 8.64 -39.26 -0.34 -3.57 16 9 C 0.08 2.05 5.57 -106.79 -0.60 1.46 16 10 C -0.47 -12.48 9.03 -37.88 -0.34 -12.82 16 11 H 0.07 1.88 7.91 -52.49 -0.41 1.46 16 12 C 0.08 1.91 5.13 -17.34 -0.09 1.82 16 13 N -0.81 -20.97 10.96 55.54 0.61 -20.36 16 14 Si 0.90 19.08 29.60 -169.99 -5.03 14.05 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 18 C -0.19 -4.59 9.74 -39.26 -0.38 -4.97 16 19 C -0.16 -3.32 9.82 -39.77 -0.39 -3.71 16 20 C -0.12 -1.46 5.06 -104.55 -0.53 -1.99 16 21 C -0.06 -0.57 9.23 -39.60 -0.37 -0.94 16 22 C -0.16 -1.46 10.03 -39.51 -0.40 -1.85 16 23 C 0.12 1.20 7.30 -39.43 -0.29 0.92 16 24 F -0.13 -1.38 17.27 2.25 0.04 -1.35 16 25 C -0.19 -1.95 10.01 -39.45 -0.39 -2.34 16 26 C 0.14 1.61 7.24 -39.43 -0.29 1.32 16 27 F -0.13 -1.62 16.57 2.25 0.04 -1.59 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.60 5.40 -51.93 -0.28 1.32 16 30 H 0.06 0.99 6.34 -51.93 -0.33 0.66 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.38 5.24 6.20 -40.82 -0.25 4.99 16 34 H 0.10 1.97 3.99 -52.49 -0.21 1.76 16 35 H 0.12 3.12 6.16 -52.49 -0.32 2.79 16 36 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.14 1.26 6.07 -52.48 -0.32 0.95 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -27.14 338.82 -9.16 -36.30 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.54 Total: 10.58 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -5.12 Total: -30.51 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.34 Total: -32.60 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.93 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.14 -9.16 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160666771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.610 kcal (2) G-P(sol) polarization free energy of solvation -27.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds