Wall clock time and date at job start Tue Mar 31 2020 12:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46867 * 2 1 4 4 H 1.08992 * 109.47104 * 305.00038 * 3 2 1 5 5 N 1.46499 * 109.47362 * 65.00281 * 3 2 1 6 6 C 1.38860 * 119.99419 * 275.00026 * 5 3 2 7 7 C 1.39565 * 119.84502 * 359.72612 * 6 5 3 8 8 C 1.36344 * 120.15858 * 179.72140 * 7 6 5 9 9 C 1.40885 * 119.83790 * 0.54923 * 8 7 6 10 10 C 1.41134 * 120.15960 * 179.70163 * 9 8 7 11 11 H 1.07998 * 120.00164 * 204.63260 * 10 9 8 12 12 C 1.39865 * 119.99737 * 24.62693 * 10 9 8 13 13 N 1.30906 * 120.00079 * 17.95872 * 12 10 9 14 14 Si 1.86800 * 120.00279 * 197.95744 * 12 10 9 15 15 H 1.48501 * 109.47039 * 90.00001 * 14 12 10 16 16 H 1.48492 * 109.47366 * 210.00133 * 14 12 10 17 17 H 1.48508 * 109.46974 * 330.00385 * 14 12 10 18 18 C 1.40894 * 119.68744 * 359.72607 * 9 8 7 19 19 C 1.36336 * 119.83566 * 359.97438 * 18 9 8 20 20 C 1.50697 * 109.47162 * 185.00007 * 3 2 1 21 21 C 1.38228 * 119.99068 * 264.99884 * 20 3 2 22 22 C 1.38185 * 120.05729 * 179.97438 * 21 20 3 23 23 C 1.38497 * 120.02055 * 0.02562 * 22 21 20 24 24 F 1.35105 * 120.01112 * 179.97438 * 23 22 21 25 25 C 1.38400 * 119.97672 * 359.97438 * 23 22 21 26 26 C 1.38439 * 119.94647 * 0.02562 * 25 23 22 27 27 F 1.35106 * 120.00976 * 180.02562 * 26 25 23 28 28 H 1.09006 * 109.46505 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46745 * 299.99885 * 1 2 3 30 30 H 1.08995 * 109.46817 * 60.00258 * 1 2 3 31 31 H 1.08995 * 109.47248 * 239.99966 * 2 1 3 32 32 H 1.09002 * 109.47167 * 119.99608 * 2 1 3 33 33 H 0.96992 * 120.00344 * 94.99958 * 5 3 2 34 34 H 1.07994 * 119.91955 * 359.97438 * 7 6 5 35 35 H 1.07998 * 120.08042 * 180.27434 * 8 7 6 36 36 H 0.96993 * 119.99988 * 179.97438 * 13 12 10 37 37 H 1.07997 * 120.07938 * 180.02562 * 18 9 8 38 38 H 1.08002 * 119.91763 * 179.97438 * 19 18 9 39 39 H 1.08009 * 119.97341 * 0.02562 * 21 20 3 40 40 H 1.07998 * 119.99254 * 180.28084 * 22 21 20 41 41 H 1.07997 * 120.02210 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 7 1.6525 2.0975 1.2518 6 6 0.3982 2.6815 1.3704 7 6 -0.4884 2.6476 0.2931 8 6 -1.7236 3.2140 0.4044 9 6 -2.0997 3.8448 1.6067 10 6 -3.3743 4.4388 1.7272 11 1 -3.5336 5.2355 2.4386 12 6 -4.4309 3.9956 0.9251 13 7 -4.3577 2.8319 0.3303 14 14 -5.9467 5.0645 0.7027 15 1 -5.7569 5.9545 -0.4707 16 1 -7.1338 4.2001 0.4815 17 1 -6.1544 5.8885 1.9206 18 6 -1.1973 3.8802 2.6881 19 6 0.0323 3.3043 2.5646 20 6 3.5419 1.4444 -0.1238 21 6 4.3286 1.5149 1.0105 22 6 5.7059 1.5162 0.8986 23 6 6.2996 1.4473 -0.3507 24 9 7.6463 1.4491 -0.4600 25 6 5.5130 1.3767 -1.4873 26 6 4.1333 1.3755 -1.3738 27 9 3.3641 1.3060 -2.4824 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.2719 2.1232 1.9977 34 1 -0.1968 2.1679 -0.6296 35 1 -2.4103 3.1832 -0.4286 36 1 -5.0907 2.5244 -0.2256 37 1 -1.4792 4.3617 3.6128 38 1 0.7252 3.3310 3.3926 39 1 3.8664 1.5683 1.9853 40 1 6.3196 1.5668 1.7858 41 1 5.9752 1.3233 -2.4619 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160666771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:05 Heat of formation + Delta-G solvation = -48.713304 kcal Electronic energy + Delta-G solvation = -25719.395137 eV Core-core repulsion = 21813.442440 eV Total energy + Delta-G solvation = -3905.952698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.07282 -50.02099 -40.79303 -39.54264 -37.41022 -35.25642 -33.24028 -32.33914 -31.72740 -31.06523 -30.07594 -27.23081 -25.78613 -24.14461 -23.61808 -23.19841 -22.34643 -20.82625 -19.37843 -19.12794 -18.45696 -17.85845 -17.11911 -17.02716 -16.80379 -16.49901 -16.35525 -16.29192 -15.66671 -15.48549 -15.36583 -14.98098 -14.69652 -14.32698 -14.08101 -13.81332 -13.67821 -13.56470 -13.41856 -13.16469 -12.78530 -12.73457 -12.71210 -12.42807 -12.28466 -12.22207 -11.95222 -11.77511 -11.51787 -11.08831 -10.98848 -10.32534 -10.11105 -9.64013 -9.28915 -8.53034 -8.12285 -5.97542 -0.13600 -0.03316 1.14113 1.24580 1.40537 1.52333 1.60656 2.28119 2.29109 2.75338 2.81980 2.87503 3.33501 3.48278 3.56939 3.87701 3.89533 4.06288 4.14245 4.22384 4.42147 4.54131 4.54988 4.68085 4.74546 4.77766 4.88342 4.92697 5.00212 5.05655 5.06943 5.14775 5.16766 5.28127 5.36162 5.49500 5.53882 5.70488 5.73490 5.85811 6.01358 6.23142 6.43149 6.68803 6.89341 7.12125 7.16781 7.33810 8.49953 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.002886 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.596405 B = 9698.784058 C =10097.414379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.204 3.796 4 H 0.066 0.934 5 N -0.740 5.740 6 C 0.116 3.884 7 C -0.164 4.164 8 C -0.147 4.147 9 C 0.038 3.962 10 C -0.506 4.506 11 H 0.065 0.935 12 C 0.033 3.967 13 N -0.839 5.839 14 Si 0.973 3.027 15 H -0.266 1.266 16 H -0.271 1.271 17 H -0.262 1.262 18 C -0.200 4.200 19 C -0.161 4.161 20 C -0.131 4.131 21 C -0.054 4.054 22 C -0.146 4.146 23 C 0.118 3.882 24 F -0.135 7.135 25 C -0.187 4.187 26 C 0.120 3.880 27 F -0.137 7.137 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.398 0.602 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.281 0.719 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.862 -5.735 -1.555 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.097 3.903 4 H 0.084 0.916 5 N -0.377 5.377 6 C 0.017 3.983 7 C -0.185 4.185 8 C -0.167 4.167 9 C 0.035 3.965 10 C -0.537 4.537 11 H 0.083 0.917 12 C -0.179 4.179 13 N -0.467 5.467 14 Si 0.795 3.205 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.186 1.186 18 C -0.220 4.220 19 C -0.184 4.184 20 C -0.133 4.133 21 C -0.072 4.072 22 C -0.165 4.165 23 C 0.098 3.902 24 F -0.113 7.113 25 C -0.206 4.206 26 C 0.101 3.899 27 F -0.116 7.116 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.177 0.823 40 H 0.188 0.812 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 18.732 -5.955 -1.908 19.748 hybrid contribution -0.850 0.424 -0.314 1.001 sum 17.881 -5.531 -2.221 18.848 Atomic orbital electron populations 1.22041 0.96063 1.00955 1.01774 1.21948 0.95649 0.95645 1.02633 1.19384 0.88675 0.93609 0.88591 0.91582 1.43914 1.14272 1.64587 1.14890 1.17289 0.86909 0.99762 0.94324 1.20466 0.94700 1.05322 0.98045 1.20826 0.95448 1.02785 0.97644 1.17803 0.93500 0.93600 0.91578 1.19587 0.95033 1.18541 1.20557 0.91656 1.26554 1.02602 0.95211 0.93547 1.69918 1.33572 1.17390 1.25791 0.85348 0.76858 0.78823 0.79487 1.19130 1.19622 1.18558 1.20710 0.96198 1.07501 0.97624 1.20071 0.97305 1.04277 0.96702 1.20140 0.96260 1.04170 0.92706 1.20851 0.92341 0.95513 0.98544 1.21457 0.95426 1.02430 0.97159 1.17405 0.76955 1.01748 0.94074 1.91531 1.29058 1.93773 1.96967 1.21119 0.91670 1.06994 1.00848 1.17205 0.88312 1.02357 0.82069 1.91520 1.75223 1.93535 1.51314 0.92793 0.93042 0.93689 0.90967 0.90654 0.76395 0.87219 0.88718 0.90894 0.88816 0.86234 0.82269 0.81206 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 8.22 71.98 0.59 -4.28 16 2 C -0.12 -3.10 5.59 30.60 0.17 -2.92 16 3 C 0.20 5.50 2.20 44.24 0.10 5.60 16 4 H 0.07 2.11 6.08 -2.39 -0.01 2.09 16 5 N -0.74 -21.75 5.07 -322.10 -1.63 -23.38 16 6 C 0.12 4.58 5.49 38.67 0.21 4.79 16 7 C -0.16 -7.33 6.62 22.15 0.15 -7.19 16 8 C -0.15 -7.78 8.64 22.48 0.19 -7.59 16 9 C 0.04 2.08 5.57 -21.27 -0.12 1.97 16 10 C -0.51 -28.36 9.03 23.38 0.21 -28.15 16 11 H 0.07 3.58 7.91 -2.91 -0.02 3.55 16 12 C 0.03 1.73 5.13 85.22 0.44 2.17 16 13 N -0.84 -45.68 10.96 21.82 0.24 -45.44 16 14 Si 0.97 40.38 29.60 68.60 2.03 42.41 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 C -0.20 -9.77 9.74 22.48 0.22 -9.55 16 19 C -0.16 -6.69 9.82 22.15 0.22 -6.47 16 20 C -0.13 -2.85 5.06 -19.82 -0.10 -2.95 16 21 C -0.05 -0.90 9.23 22.25 0.21 -0.69 16 22 C -0.15 -2.07 10.03 22.32 0.22 -1.85 16 23 C 0.12 1.98 7.30 22.37 0.16 2.14 16 24 F -0.13 -2.35 17.27 44.97 0.78 -1.58 16 25 C -0.19 -3.37 10.01 22.36 0.22 -3.15 16 26 C 0.12 2.63 7.24 22.37 0.16 2.79 16 27 F -0.14 -3.42 16.57 44.97 0.74 -2.68 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 29 H 0.05 1.98 5.40 -2.39 -0.01 1.96 16 30 H 0.04 1.54 6.34 -2.39 -0.02 1.53 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.40 9.42 6.20 -92.71 -0.58 8.85 16 34 H 0.11 4.56 3.99 -2.91 -0.01 4.55 16 35 H 0.09 5.36 6.16 -2.91 -0.02 5.34 16 36 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 37 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.16 2.07 6.07 -2.91 -0.02 2.05 16 40 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -61.58 338.82 5.93 -55.65 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.51 Total: 30.35 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 3.26 Total: -55.33 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.40 Total: -68.83 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 1.52 Total: -4.25 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -61.58 5.93 -55.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160666771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.938 kcal (2) G-P(sol) polarization free energy of solvation -61.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds