Wall clock time and date at job start Tue Mar 31 2020 11:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32158 * 117.97768 * 2 1 4 4 C 1.34039 * 117.40185 * 179.97438 * 3 2 1 5 5 S 1.74476 * 129.35763 * 180.02562 * 4 3 2 6 6 C 1.75841 * 92.38720 * 179.97438 * 5 4 3 7 7 C 1.33821 * 111.49597 * 0.02562 * 6 5 4 8 8 C 1.40182 * 120.96548 * 359.97274 * 4 3 2 9 9 C 1.42135 * 119.02887 * 0.07855 * 8 4 3 10 10 N 1.38324 * 122.19972 * 179.97438 * 9 8 4 11 11 C 1.46504 * 120.00112 * 185.53890 * 10 9 8 12 12 H 1.08999 * 109.47156 * 34.99912 * 11 10 9 13 13 C 1.52994 * 109.47107 * 274.99575 * 11 10 9 14 14 C 1.50704 * 109.46882 * 154.99588 * 11 10 9 15 15 H 1.08005 * 120.00017 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99901 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00061 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00027 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47081 * 59.99985 * 18 16 14 20 20 H 1.48500 * 109.46814 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46764 * 300.00032 * 18 16 14 22 22 N 1.31766 * 117.98129 * 179.97438 * 2 1 3 23 23 C 1.52360 * 123.14641 * 180.28216 * 7 6 5 24 24 C 1.53067 * 108.90205 * 342.33087 * 23 7 6 25 25 C 1.53186 * 108.95097 * 51.21484 * 24 23 7 26 26 C 1.51805 * 124.15691 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.46962 * 90.00213 * 1 2 3 28 28 H 1.09000 * 109.47263 * 210.00310 * 1 2 3 29 29 H 1.08996 * 109.47419 * 330.00097 * 1 2 3 30 30 H 0.96997 * 119.99607 * 5.53790 * 10 9 8 31 31 H 1.08998 * 109.47229 * 60.00273 * 13 11 10 32 32 H 1.09000 * 109.47236 * 180.02562 * 13 11 10 33 33 H 1.08999 * 109.47388 * 300.00195 * 13 11 10 34 34 H 0.96999 * 120.00088 * 179.97438 * 17 16 14 35 35 H 1.08994 * 109.54672 * 102.30294 * 23 7 6 36 36 H 1.08995 * 109.55181 * 222.60465 * 23 7 6 37 37 H 1.08998 * 109.71940 * 291.30721 * 24 23 7 38 38 H 1.08997 * 109.55180 * 171.02568 * 24 23 7 39 39 H 1.09000 * 109.56708 * 169.60762 * 25 24 23 40 40 H 1.08996 * 109.67834 * 49.29286 * 25 24 23 41 41 H 1.08996 * 109.56396 * 283.12266 * 26 6 5 42 42 H 1.09001 * 109.55966 * 43.46924 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1270 1.1671 0.0000 4 6 3.4673 1.1537 0.0005 5 16 4.5873 2.4915 0.0013 6 6 5.9815 1.4199 0.0024 7 6 5.6115 0.1339 0.0016 8 6 4.1765 -0.0556 0.0016 9 6 3.4534 -1.2792 0.0005 10 7 4.0860 -2.5093 0.0010 11 6 3.2983 -3.7383 -0.1227 12 1 2.4482 -3.5602 -0.7814 13 6 2.7937 -4.1617 1.2581 14 6 4.1603 -4.8316 -0.6996 15 1 5.1920 -4.6311 -0.9487 16 6 3.6324 -6.0880 -0.9083 17 7 2.3763 -6.3323 -0.6045 18 14 4.7011 -7.4434 -1.6227 19 1 5.8591 -7.6854 -0.7252 20 1 3.9025 -8.6891 -1.7481 21 1 5.1909 -7.0328 -2.9631 22 7 2.1253 -1.1636 0.0005 23 6 6.6071 -1.0194 0.0086 24 6 7.9781 -0.4936 -0.4237 25 6 8.3284 0.7354 0.4211 26 6 7.4228 1.8965 0.0040 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 5.0513 -2.5581 0.0832 31 1 2.1702 -3.3710 1.6753 32 1 2.2079 -5.0764 1.1662 33 1 3.6437 -4.3398 1.9168 34 1 2.0047 -7.2161 -0.7517 35 1 6.6739 -1.4374 1.0129 36 1 6.2772 -1.7903 -0.6878 37 1 7.9499 -0.2156 -1.4772 38 1 8.7303 -1.2674 -0.2708 39 1 9.3708 1.0075 0.2549 40 1 8.1733 0.5117 1.4765 41 1 7.6971 2.2328 -0.9958 42 1 7.5345 2.7186 0.7110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171365957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:07 Heat of formation + Delta-G solvation = 42.018020 kcal Electronic energy + Delta-G solvation = -24414.430528 eV Core-core repulsion = 21098.545374 eV Total energy + Delta-G solvation = -3315.885154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54516 -38.29304 -36.43058 -34.19334 -33.35365 -31.64180 -30.86012 -30.48924 -28.70369 -26.98326 -25.35981 -24.34482 -23.05438 -22.51379 -21.40812 -20.68506 -18.61427 -17.87459 -16.83311 -16.82108 -16.08282 -15.35680 -15.04808 -14.90923 -14.48128 -13.96864 -13.82377 -13.53242 -13.38624 -13.04513 -12.91565 -12.66933 -12.55848 -12.35001 -12.09014 -12.04843 -11.51460 -11.35156 -11.13613 -10.98697 -10.97173 -10.93931 -10.73139 -10.48255 -10.33577 -10.31102 -10.20896 -10.16085 -9.16270 -8.76675 -8.65220 -8.52520 -8.07775 -7.10628 -6.22065 -4.32444 0.90659 1.47838 1.68602 2.10944 2.38224 3.19495 3.25243 3.25851 3.72213 4.20920 4.26613 4.48717 4.57321 4.70026 4.78216 4.93765 5.01653 5.10349 5.12950 5.28679 5.41288 5.46801 5.48639 5.65073 5.72009 5.79034 5.85359 5.89514 5.95374 5.96770 6.07590 6.20586 6.25339 6.55742 6.59283 6.75771 6.94285 7.02860 7.21826 7.34469 7.54079 7.73490 7.88557 8.08536 8.32882 8.65951 8.88094 9.34548 10.83541 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.004906 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.238912 B = 5706.178266 C = 7696.294810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.371 3.629 3 N -0.537 5.537 4 C 0.117 3.883 5 S 0.131 5.869 6 C -0.207 4.207 7 C -0.042 4.042 8 C -0.256 4.256 9 C 0.499 3.501 10 N -0.666 5.666 11 C 0.266 3.734 12 H 0.055 0.945 13 C -0.146 4.146 14 C -0.540 4.540 15 H 0.060 0.940 16 C 0.071 3.929 17 N -0.880 5.880 18 Si 0.902 3.098 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.276 1.276 22 N -0.582 5.582 23 C -0.073 4.073 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.040 4.040 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.404 0.596 31 H 0.019 0.981 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 13.742 1.930 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.098 3.902 3 N -0.263 5.263 4 C -0.133 4.133 5 S 0.391 5.609 6 C -0.323 4.323 7 C -0.054 4.054 8 C -0.274 4.274 9 C 0.245 3.755 10 N -0.293 5.293 11 C 0.165 3.835 12 H 0.073 0.927 13 C -0.205 4.205 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.133 4.133 17 N -0.517 5.517 18 Si 0.729 3.271 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 N -0.310 5.310 23 C -0.113 4.113 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.079 4.079 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.244 0.756 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.102 14.986 1.906 16.293 hybrid contribution 1.768 -2.344 -0.357 2.958 sum 7.871 12.642 1.549 14.972 Atomic orbital electron populations 1.20550 0.86336 1.03665 1.03556 1.23001 0.97500 0.82579 0.87083 1.69640 1.03934 1.27568 1.25141 1.23424 0.95552 0.95831 0.98533 1.83597 0.93019 1.05778 1.78486 1.24249 0.98515 0.95422 1.14119 1.19980 0.91246 0.94186 1.00011 1.19911 0.93784 0.94204 1.19542 1.18736 0.87742 0.85288 0.83695 1.45970 1.10140 1.03191 1.70009 1.18958 0.91637 0.78359 0.94524 0.92690 1.22084 0.99457 1.01898 0.97058 1.21123 0.97665 0.95130 1.43966 0.92216 1.24841 0.95155 0.98334 0.95005 1.69880 1.12722 1.22562 1.46511 0.86497 0.80166 0.80802 0.79616 1.20080 1.20990 1.20120 1.67428 1.08999 1.28628 1.25992 1.20823 0.93036 0.94928 1.02501 1.21549 0.95997 0.97651 1.00225 1.21573 0.98645 0.94774 1.00420 1.20271 0.87615 0.98031 1.01971 0.89901 0.89576 0.90156 0.75589 0.96178 0.88920 0.95672 0.92370 0.89885 0.89772 0.91358 0.90999 0.91164 0.91386 0.90518 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.25 36.01 0.37 -0.82 16 2 C 0.37 7.04 7.59 -156.90 -1.19 5.85 16 3 N -0.54 -10.19 10.61 -9.54 -0.10 -10.29 16 4 C 0.12 2.17 7.49 -15.86 -0.12 2.05 16 5 S 0.13 1.91 23.16 -107.50 -2.49 -0.58 16 6 C -0.21 -2.84 6.30 -35.31 -0.22 -3.07 16 7 C -0.04 -0.66 5.92 -102.78 -0.61 -1.27 16 8 C -0.26 -4.81 6.00 -105.10 -0.63 -5.44 16 9 C 0.50 10.39 7.66 -153.73 -1.18 9.22 16 10 N -0.67 -14.00 5.11 -54.18 -0.28 -14.27 16 11 C 0.27 6.50 2.59 -69.08 -0.18 6.32 16 12 H 0.06 1.52 7.73 -51.93 -0.40 1.11 16 13 C -0.15 -3.50 9.27 37.15 0.34 -3.16 16 14 C -0.54 -13.84 8.73 -34.44 -0.30 -14.15 16 15 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 16 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 17 N -0.88 -23.83 11.32 55.43 0.63 -23.20 16 18 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 N -0.58 -12.36 9.31 -9.22 -0.09 -12.45 16 23 C -0.07 -0.98 4.56 -27.02 -0.12 -1.10 16 24 C -0.12 -1.21 5.92 -26.60 -0.16 -1.37 16 25 C -0.12 -1.05 5.94 -26.61 -0.16 -1.21 16 26 C -0.04 -0.40 6.22 -27.31 -0.17 -0.57 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.40 7.62 4.70 -40.82 -0.19 7.43 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.08 1.23 6.36 -51.93 -0.33 0.89 16 37 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -29.05 348.58 -12.36 -41.41 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.85 Total: 6.07 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -4.42 Total: -6.96 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.16 Total: -60.21 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.49 Total: -0.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.05 -12.36 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171365957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.426 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds