Wall clock time and date at job start Tue Mar 31 2020 11:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32158 * 117.97768 * 2 1 4 4 C 1.34039 * 117.40185 * 179.97438 * 3 2 1 5 5 S 1.74476 * 129.35763 * 180.02562 * 4 3 2 6 6 C 1.75841 * 92.38720 * 179.97438 * 5 4 3 7 7 C 1.33821 * 111.49597 * 0.02562 * 6 5 4 8 8 C 1.40182 * 120.96548 * 359.97274 * 4 3 2 9 9 C 1.42135 * 119.02887 * 0.07855 * 8 4 3 10 10 N 1.38324 * 122.19972 * 179.97438 * 9 8 4 11 11 C 1.46504 * 120.00112 * 185.53890 * 10 9 8 12 12 H 1.08999 * 109.47156 * 34.99912 * 11 10 9 13 13 C 1.52994 * 109.47107 * 274.99575 * 11 10 9 14 14 C 1.50704 * 109.46882 * 154.99588 * 11 10 9 15 15 H 1.08005 * 120.00017 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99901 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00061 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 120.00027 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47081 * 59.99985 * 18 16 14 20 20 H 1.48500 * 109.46814 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46764 * 300.00032 * 18 16 14 22 22 N 1.31766 * 117.98129 * 179.97438 * 2 1 3 23 23 C 1.52360 * 123.14641 * 180.28216 * 7 6 5 24 24 C 1.53067 * 108.90205 * 342.33087 * 23 7 6 25 25 C 1.53186 * 108.95097 * 51.21484 * 24 23 7 26 26 C 1.51805 * 124.15691 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.46962 * 90.00213 * 1 2 3 28 28 H 1.09000 * 109.47263 * 210.00310 * 1 2 3 29 29 H 1.08996 * 109.47419 * 330.00097 * 1 2 3 30 30 H 0.96997 * 119.99607 * 5.53790 * 10 9 8 31 31 H 1.08998 * 109.47229 * 60.00273 * 13 11 10 32 32 H 1.09000 * 109.47236 * 180.02562 * 13 11 10 33 33 H 1.08999 * 109.47388 * 300.00195 * 13 11 10 34 34 H 0.96999 * 120.00088 * 179.97438 * 17 16 14 35 35 H 1.08994 * 109.54672 * 102.30294 * 23 7 6 36 36 H 1.08995 * 109.55181 * 222.60465 * 23 7 6 37 37 H 1.08998 * 109.71940 * 291.30721 * 24 23 7 38 38 H 1.08997 * 109.55180 * 171.02568 * 24 23 7 39 39 H 1.09000 * 109.56708 * 169.60762 * 25 24 23 40 40 H 1.08996 * 109.67834 * 49.29286 * 25 24 23 41 41 H 1.08996 * 109.56396 * 283.12266 * 26 6 5 42 42 H 1.09001 * 109.55966 * 43.46924 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1270 1.1671 0.0000 4 6 3.4673 1.1537 0.0005 5 16 4.5873 2.4915 0.0013 6 6 5.9815 1.4199 0.0024 7 6 5.6115 0.1339 0.0016 8 6 4.1765 -0.0556 0.0016 9 6 3.4534 -1.2792 0.0005 10 7 4.0860 -2.5093 0.0010 11 6 3.2983 -3.7383 -0.1227 12 1 2.4482 -3.5602 -0.7814 13 6 2.7937 -4.1617 1.2581 14 6 4.1603 -4.8316 -0.6996 15 1 5.1920 -4.6311 -0.9487 16 6 3.6324 -6.0880 -0.9083 17 7 2.3763 -6.3323 -0.6045 18 14 4.7011 -7.4434 -1.6227 19 1 5.8591 -7.6854 -0.7252 20 1 3.9025 -8.6891 -1.7481 21 1 5.1909 -7.0328 -2.9631 22 7 2.1253 -1.1636 0.0005 23 6 6.6071 -1.0194 0.0086 24 6 7.9781 -0.4936 -0.4237 25 6 8.3284 0.7354 0.4211 26 6 7.4228 1.8965 0.0040 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 5.0513 -2.5581 0.0832 31 1 2.1702 -3.3710 1.6753 32 1 2.2079 -5.0764 1.1662 33 1 3.6437 -4.3398 1.9168 34 1 2.0047 -7.2161 -0.7517 35 1 6.6739 -1.4374 1.0129 36 1 6.2772 -1.7903 -0.6878 37 1 7.9499 -0.2156 -1.4772 38 1 8.7303 -1.2674 -0.2708 39 1 9.3708 1.0075 0.2549 40 1 8.1733 0.5117 1.4765 41 1 7.6971 2.2328 -0.9958 42 1 7.5345 2.7186 0.7110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171365957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:06 Heat of formation + Delta-G solvation = 27.514958 kcal Electronic energy + Delta-G solvation = -24415.059428 eV Core-core repulsion = 21098.545374 eV Total energy + Delta-G solvation = -3316.514054 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94933 -39.35201 -38.11269 -35.42343 -35.10104 -33.26419 -31.95777 -31.65641 -30.39996 -28.17896 -27.36080 -25.71422 -24.16331 -23.76905 -22.59229 -22.45853 -19.72153 -19.35524 -18.39203 -18.32573 -17.47600 -16.85296 -16.55691 -16.44349 -15.58422 -15.46193 -14.78698 -14.74439 -14.69055 -14.44009 -14.28483 -14.08266 -13.84794 -13.57395 -13.39211 -13.19715 -13.12643 -12.95218 -12.77804 -12.50668 -12.41659 -12.23577 -12.13657 -12.07798 -11.72358 -11.65617 -11.36809 -11.26891 -11.10466 -10.61654 -10.14478 -10.08120 -9.39250 -8.53313 -8.20000 -6.37996 -0.43605 0.18094 0.22254 0.89362 1.12497 1.43645 1.44934 1.52820 2.15042 2.43066 2.74464 3.10351 3.16936 3.46060 3.54432 3.70672 3.86684 4.00409 4.12895 4.20466 4.28449 4.49842 4.58681 4.66138 4.71905 4.72604 4.76320 4.82749 4.88756 4.98120 4.99564 5.03242 5.06812 5.18260 5.27143 5.31036 5.44720 5.45789 5.48488 5.60366 5.67626 5.81224 6.01839 6.28182 6.59710 6.77746 7.29761 7.38578 8.85356 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.004906 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.238912 B = 5706.178266 C = 7696.294810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.351 3.649 3 N -0.539 5.539 4 C 0.078 3.922 5 S 0.178 5.822 6 C -0.187 4.187 7 C -0.072 4.072 8 C -0.262 4.262 9 C 0.478 3.522 10 N -0.670 5.670 11 C 0.279 3.721 12 H 0.014 0.986 13 C -0.130 4.130 14 C -0.555 4.555 15 H 0.067 0.933 16 C 0.023 3.977 17 N -0.910 5.910 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.613 5.613 23 C -0.072 4.072 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.042 4.042 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.412 0.588 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.299 15.345 1.837 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 N -0.265 5.265 4 C -0.171 4.171 5 S 0.439 5.561 6 C -0.303 4.303 7 C -0.083 4.083 8 C -0.280 4.280 9 C 0.225 3.775 10 N -0.300 5.300 11 C 0.177 3.823 12 H 0.032 0.968 13 C -0.189 4.189 14 C -0.593 4.593 15 H 0.085 0.915 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.197 1.197 22 N -0.342 5.342 23 C -0.111 4.111 24 C -0.151 4.151 25 C -0.150 4.150 26 C -0.081 4.081 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.254 0.746 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.924 16.651 1.819 18.979 hybrid contribution 0.909 -2.647 -0.328 2.818 sum 9.833 14.004 1.490 17.176 Atomic orbital electron populations 1.20648 0.83720 1.04576 1.04614 1.23714 0.99177 0.82177 0.87048 1.69698 1.04492 1.27444 1.24859 1.24062 0.95970 0.97720 0.99382 1.83400 0.91726 1.03876 1.77092 1.24917 1.00338 0.94661 1.10424 1.20159 0.90093 0.95831 1.02223 1.20199 0.95625 0.93397 1.18825 1.18990 0.88216 0.85817 0.84432 1.45610 1.10206 1.02447 1.71755 1.18503 0.90689 0.79592 0.93553 0.96822 1.21884 0.99172 1.00692 0.97193 1.21441 0.98127 0.95660 1.44033 0.91478 1.25687 0.96300 1.00602 0.95247 1.70019 1.14312 1.23038 1.47402 0.85454 0.78610 0.77699 0.78947 1.18940 1.20907 1.19744 1.67441 1.09720 1.30111 1.26924 1.20838 0.94316 0.93862 1.02133 1.21571 0.94258 0.98848 1.00412 1.21593 0.99996 0.93477 0.99899 1.20545 0.84765 0.99060 1.03757 0.88635 0.89757 0.88032 0.74567 0.96285 0.91061 0.95112 0.92384 0.89854 0.91726 0.91364 0.89397 0.88167 0.91590 0.88657 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 10.25 71.24 0.73 -1.53 16 2 C 0.35 13.73 7.59 138.65 1.05 14.78 16 3 N -0.54 -20.68 10.61 -184.09 -1.95 -22.63 16 4 C 0.08 2.89 7.49 84.83 0.64 3.53 16 5 S 0.18 4.83 23.16 -56.49 -1.31 3.53 16 6 C -0.19 -4.68 6.30 25.03 0.16 -4.52 16 7 C -0.07 -2.17 5.92 -18.67 -0.11 -2.29 16 8 C -0.26 -10.00 6.00 -20.18 -0.12 -10.13 16 9 C 0.48 20.78 7.66 133.77 1.02 21.81 16 10 N -0.67 -29.42 5.11 -325.31 -1.66 -31.08 16 11 C 0.28 14.27 2.59 44.24 0.11 14.39 16 12 H 0.01 0.81 7.73 -2.39 -0.02 0.80 16 13 C -0.13 -6.52 9.27 71.98 0.67 -5.86 16 14 C -0.55 -29.05 8.73 25.60 0.22 -28.82 16 15 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 16 C 0.02 1.19 5.30 84.65 0.45 1.64 16 17 N -0.91 -50.68 11.32 21.45 0.24 -50.44 16 18 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 N -0.61 -27.34 9.31 -183.10 -1.70 -29.05 16 23 C -0.07 -1.86 4.56 30.40 0.14 -1.72 16 24 C -0.11 -2.04 5.92 30.68 0.18 -1.86 16 25 C -0.11 -1.56 5.94 30.67 0.18 -1.38 16 26 C -0.04 -0.66 6.22 30.22 0.19 -0.48 16 27 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.41 16.15 4.70 -92.71 -0.44 15.71 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 36 H 0.06 1.91 6.36 -2.39 -0.02 1.89 16 37 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -65.10 348.58 1.76 -63.33 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.61 Total: 25.53 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.51 Total: -2.44 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.08 Total: -133.19 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.31 Total: 3.53 kcal Total: -65.10 1.76 -63.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171365957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.848 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds