Wall clock time and date at job start Tue Mar 31 2020 11:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99335 * 2 1 4 4 O 1.20828 * 120.00709 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46735 * 85.85254 * 5 3 2 7 7 N 1.46504 * 109.46889 * 325.85532 * 5 3 2 8 8 C 1.34774 * 119.99777 * 174.61584 * 7 5 3 9 9 O 1.21553 * 119.99852 * 359.97438 * 8 7 5 10 10 C 1.47880 * 119.99979 * 180.02562 * 8 7 5 11 11 C 1.39914 * 120.02820 * 359.97270 * 10 8 7 12 12 C 1.38324 * 120.36521 * 180.02562 * 11 10 8 13 13 C 1.37754 * 120.40897 * 359.95388 * 12 11 10 14 14 C 1.40752 * 120.04014 * 0.04620 * 13 12 11 15 15 C 1.41436 * 120.17644 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00541 * 24.32777 * 15 14 13 17 17 C 1.39941 * 119.99661 * 204.32875 * 15 14 13 18 18 N 1.30827 * 120.00061 * 14.37330 * 17 15 14 19 19 Si 1.86801 * 119.99877 * 194.36373 * 17 15 14 20 20 H 1.48499 * 109.46901 * 90.00171 * 19 17 15 21 21 H 1.48499 * 109.47098 * 210.00236 * 19 17 15 22 22 H 1.48503 * 109.47044 * 330.00253 * 19 17 15 23 23 C 1.39000 * 120.02665 * 180.02562 * 10 8 7 24 24 C 1.52990 * 109.47324 * 205.85147 * 5 3 2 25 25 C 1.53002 * 117.49639 * 123.04858 * 24 5 3 26 26 C 1.53000 * 117.49933 * 54.39188 * 24 5 3 27 27 H 1.09005 * 109.46683 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47446 * 299.99219 * 1 2 3 29 29 H 1.08996 * 109.47483 * 59.99969 * 1 2 3 30 30 H 1.09003 * 109.47317 * 300.00251 * 6 5 3 31 31 H 1.08994 * 109.47058 * 60.00154 * 6 5 3 32 32 H 1.09001 * 109.46984 * 180.02562 * 6 5 3 33 33 H 0.96997 * 119.99990 * 354.61558 * 7 5 3 34 34 H 1.08010 * 119.81598 * 0.02562 * 11 10 8 35 35 H 1.07996 * 119.79767 * 179.97438 * 12 11 10 36 36 H 1.08004 * 119.97934 * 180.02562 * 13 12 11 37 37 H 0.96996 * 120.00024 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.19779 * 359.69996 * 23 10 8 39 39 H 1.09003 * 115.55324 * 268.71524 * 24 5 3 40 40 H 1.08995 * 117.50109 * 0.02562 * 25 24 5 41 41 H 1.09008 * 117.49774 * 145.02415 * 25 24 5 42 42 H 1.09002 * 117.50004 * 214.98071 * 26 24 5 43 43 H 1.08997 * 117.49694 * 359.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 0.0006 6 6 4.0815 1.1974 -1.4380 7 7 4.1135 0.1593 0.7763 8 6 5.4459 -0.0378 0.8254 9 8 6.1934 0.7099 0.2257 10 6 5.9983 -1.1645 1.6080 11 6 5.1384 -2.0258 2.2981 12 6 5.6476 -3.0815 3.0326 13 6 7.0067 -3.2978 3.0926 14 6 7.8875 -2.4419 2.4050 15 6 9.2835 -2.6609 2.4650 16 1 9.6666 -3.6475 2.6799 17 6 10.1683 -1.5992 2.2461 18 7 9.7292 -0.3669 2.2657 19 14 11.9766 -1.9412 1.9259 20 1 12.1992 -2.1015 0.4664 21 1 12.7918 -0.8066 2.4293 22 1 12.3764 -3.1876 2.6274 23 6 7.3724 -1.3679 1.6595 24 6 4.0073 2.5982 0.6294 25 6 4.9450 2.5289 1.8364 26 6 3.4793 2.9266 2.0274 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.7673 0.2547 -1.8861 31 1 3.6743 2.0275 -2.0151 32 1 5.1701 1.2541 -1.4376 33 1 3.5170 -0.4376 1.2545 34 1 4.0711 -1.8655 2.2570 35 1 4.9755 -3.7405 3.5621 36 1 7.3968 -4.1245 3.6679 37 1 10.3426 0.3690 2.1143 38 1 8.0397 -0.7079 1.1251 39 1 4.1418 3.4273 -0.0654 40 1 5.2481 1.5406 2.1821 41 1 5.6962 3.3125 1.9359 42 1 3.2667 3.9718 2.2524 43 1 2.8175 2.2002 2.4989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172467201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:30 Heat of formation + Delta-G solvation = -63.013377 kcal Electronic energy + Delta-G solvation = -27170.743817 eV Core-core repulsion = 23375.258537 eV Total energy + Delta-G solvation = -3795.485280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19531 -39.58002 -37.63178 -36.78388 -36.10564 -34.08193 -33.70893 -31.32844 -29.59824 -29.32785 -28.04629 -25.41448 -24.93293 -22.62699 -22.50684 -21.95726 -20.98804 -19.89683 -19.13021 -18.21408 -17.63871 -16.96342 -16.53931 -15.87042 -15.67328 -15.26191 -14.97953 -14.66306 -14.26778 -13.85748 -13.64403 -13.52683 -13.18634 -12.82887 -12.59262 -12.50187 -12.43442 -12.24912 -12.06120 -11.64127 -11.54728 -11.19785 -11.13537 -11.05387 -10.97132 -10.73201 -10.61705 -10.50322 -10.18290 -10.08886 -9.91880 -9.73179 -9.26400 -8.90902 -8.82136 -7.66841 -7.53078 -6.78882 -4.44458 1.96744 2.16251 2.44088 2.79982 3.06862 3.09730 3.13811 3.44904 3.79255 3.90475 3.99657 4.57870 4.63167 4.67872 4.90538 4.91907 4.98987 5.23487 5.24770 5.32237 5.42296 5.57602 5.59413 5.77854 5.79637 5.86634 6.05725 6.10016 6.15399 6.25911 6.27587 6.37848 6.46059 6.68679 6.69427 6.96037 6.98965 7.20599 7.35922 7.55824 7.66944 7.72204 7.90465 8.03131 8.16366 8.48802 8.78411 8.81112 8.87845 10.13671 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.003798 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.340593 B = 7369.880494 C = 8127.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.467 3.533 4 O -0.491 6.491 5 C 0.227 3.773 6 C -0.164 4.164 7 N -0.730 5.730 8 C 0.573 3.427 9 O -0.529 6.529 10 C -0.131 4.131 11 C -0.216 4.216 12 C -0.098 4.098 13 C -0.210 4.210 14 C 0.096 3.904 15 C -0.458 4.458 16 H 0.080 0.920 17 C 0.072 3.928 18 N -0.785 5.785 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.089 4.089 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.175 4.175 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.405 0.595 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.140 0.860 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 2.628 -3.384 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.376 6.376 5 C 0.139 3.861 6 C -0.222 4.222 7 N -0.387 5.387 8 C 0.364 3.636 9 O -0.406 6.406 10 C -0.134 4.134 11 C -0.236 4.236 12 C -0.117 4.117 13 C -0.230 4.230 14 C 0.094 3.906 15 C -0.487 4.487 16 H 0.098 0.902 17 C -0.147 4.147 18 N -0.410 5.410 19 Si 0.736 3.264 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.109 4.109 24 C -0.168 4.168 25 C -0.183 4.183 26 C -0.212 4.212 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.242 0.758 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.158 0.842 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.299 3.725 -3.838 13.411 hybrid contribution 0.081 -0.305 0.160 0.354 sum -12.218 3.420 -3.678 13.210 Atomic orbital electron populations 1.23298 0.76284 1.03868 1.02505 1.86554 1.23459 1.33299 1.83767 1.23793 0.91460 0.81623 0.72326 1.90661 1.66294 1.36251 1.44362 1.19528 0.83707 0.88018 0.94832 1.22296 1.06202 1.02293 0.91398 1.46084 1.08326 1.30927 1.53392 1.18685 0.80497 0.84462 0.79912 1.90675 1.58271 1.46811 1.44876 1.19448 0.95119 0.96408 1.02437 1.20367 0.96326 0.99951 1.07001 1.20426 0.95060 0.97086 0.99086 1.21119 0.92887 1.03845 1.05165 1.17613 0.93351 0.90734 0.88922 1.19614 0.90545 0.96249 1.42262 0.90155 1.25955 1.01755 0.94487 0.92476 1.69760 1.37763 0.99591 1.33872 0.86245 0.81293 0.79125 0.79703 1.19185 1.20213 1.18632 1.21756 0.91797 0.99179 0.98158 1.22316 1.06466 0.96298 0.91703 1.23123 0.92115 1.03929 0.99121 1.22928 0.97945 1.01903 0.98395 0.87902 0.91828 0.91899 0.91628 0.91555 0.87132 0.75817 0.89266 0.88928 0.88654 0.90473 0.84207 0.86612 0.87715 0.88558 0.88779 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.38 9.81 -39.25 -0.39 -4.77 16 3 C 0.47 6.55 6.24 36.01 0.22 6.77 16 4 O -0.49 -7.51 15.62 -18.75 -0.29 -7.80 16 5 C 0.23 3.40 0.84 -132.97 -0.11 3.28 16 6 C -0.16 -2.36 8.25 37.16 0.31 -2.05 16 7 N -0.73 -11.87 4.39 -49.60 -0.22 -12.08 16 8 C 0.57 11.52 4.88 -12.31 -0.06 11.46 16 9 O -0.53 -11.72 12.41 5.32 0.07 -11.66 16 10 C -0.13 -2.93 5.87 -105.04 -0.62 -3.55 16 11 C -0.22 -4.39 9.55 -38.92 -0.37 -4.76 16 12 C -0.10 -2.04 10.01 -39.73 -0.40 -2.43 16 13 C -0.21 -4.86 9.78 -38.81 -0.38 -5.24 16 14 C 0.10 2.47 5.59 -106.87 -0.60 1.87 16 15 C -0.46 -11.72 9.07 -37.73 -0.34 -12.06 16 16 H 0.08 1.96 7.89 -52.49 -0.41 1.55 16 17 C 0.07 1.77 5.22 -17.34 -0.09 1.68 16 18 N -0.79 -20.11 10.74 55.55 0.60 -19.51 16 19 Si 0.91 18.40 29.58 -169.99 -5.03 13.37 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.09 -2.26 8.23 -38.44 -0.32 -2.58 16 24 C -0.15 -2.24 4.36 -90.62 -0.40 -2.64 16 25 C -0.15 -2.39 8.42 -26.69 -0.22 -2.62 16 26 C -0.17 -2.48 9.37 -26.69 -0.25 -2.73 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.84 5.79 -51.93 -0.30 1.54 16 33 H 0.40 6.06 5.99 -40.82 -0.24 5.82 16 34 H 0.09 1.52 6.38 -52.48 -0.33 1.19 16 35 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.14 3.85 5.60 -52.49 -0.29 3.55 16 39 H 0.12 1.64 8.07 -51.93 -0.42 1.23 16 40 H 0.10 1.99 5.10 -51.93 -0.26 1.73 16 41 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.20 7.99 -51.93 -0.41 0.79 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -28.31 354.29 -8.10 -36.41 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -5.62 Total: 14.94 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -2.56 Total: -14.24 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.38 Total: -31.60 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.61 Total: -24.22 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.31 -8.10 -36.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172467201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.605 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds