Wall clock time and date at job start Tue Mar 31 2020 11:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99335 * 2 1 4 4 O 1.20828 * 120.00709 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46735 * 85.85254 * 5 3 2 7 7 N 1.46504 * 109.46889 * 325.85532 * 5 3 2 8 8 C 1.34774 * 119.99777 * 174.61584 * 7 5 3 9 9 O 1.21553 * 119.99852 * 359.97438 * 8 7 5 10 10 C 1.47880 * 119.99979 * 180.02562 * 8 7 5 11 11 C 1.39914 * 120.02820 * 359.97270 * 10 8 7 12 12 C 1.38324 * 120.36521 * 180.02562 * 11 10 8 13 13 C 1.37754 * 120.40897 * 359.95388 * 12 11 10 14 14 C 1.40752 * 120.04014 * 0.04620 * 13 12 11 15 15 C 1.41436 * 120.17644 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00541 * 24.32777 * 15 14 13 17 17 C 1.39941 * 119.99661 * 204.32875 * 15 14 13 18 18 N 1.30827 * 120.00061 * 14.37330 * 17 15 14 19 19 Si 1.86801 * 119.99877 * 194.36373 * 17 15 14 20 20 H 1.48499 * 109.46901 * 90.00171 * 19 17 15 21 21 H 1.48499 * 109.47098 * 210.00236 * 19 17 15 22 22 H 1.48503 * 109.47044 * 330.00253 * 19 17 15 23 23 C 1.39000 * 120.02665 * 180.02562 * 10 8 7 24 24 C 1.52990 * 109.47324 * 205.85147 * 5 3 2 25 25 C 1.53002 * 117.49639 * 123.04858 * 24 5 3 26 26 C 1.53000 * 117.49933 * 54.39188 * 24 5 3 27 27 H 1.09005 * 109.46683 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47446 * 299.99219 * 1 2 3 29 29 H 1.08996 * 109.47483 * 59.99969 * 1 2 3 30 30 H 1.09003 * 109.47317 * 300.00251 * 6 5 3 31 31 H 1.08994 * 109.47058 * 60.00154 * 6 5 3 32 32 H 1.09001 * 109.46984 * 180.02562 * 6 5 3 33 33 H 0.96997 * 119.99990 * 354.61558 * 7 5 3 34 34 H 1.08010 * 119.81598 * 0.02562 * 11 10 8 35 35 H 1.07996 * 119.79767 * 179.97438 * 12 11 10 36 36 H 1.08004 * 119.97934 * 180.02562 * 13 12 11 37 37 H 0.96996 * 120.00024 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.19779 * 359.69996 * 23 10 8 39 39 H 1.09003 * 115.55324 * 268.71524 * 24 5 3 40 40 H 1.08995 * 117.50109 * 0.02562 * 25 24 5 41 41 H 1.09008 * 117.49774 * 145.02415 * 25 24 5 42 42 H 1.09002 * 117.50004 * 214.98071 * 26 24 5 43 43 H 1.08997 * 117.49694 * 359.97438 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 0.0006 6 6 4.0815 1.1974 -1.4380 7 7 4.1135 0.1593 0.7763 8 6 5.4459 -0.0378 0.8254 9 8 6.1934 0.7099 0.2257 10 6 5.9983 -1.1645 1.6080 11 6 5.1384 -2.0258 2.2981 12 6 5.6476 -3.0815 3.0326 13 6 7.0067 -3.2978 3.0926 14 6 7.8875 -2.4419 2.4050 15 6 9.2835 -2.6609 2.4650 16 1 9.6666 -3.6475 2.6799 17 6 10.1683 -1.5992 2.2461 18 7 9.7292 -0.3669 2.2657 19 14 11.9766 -1.9412 1.9259 20 1 12.1992 -2.1015 0.4664 21 1 12.7918 -0.8066 2.4293 22 1 12.3764 -3.1876 2.6274 23 6 7.3724 -1.3679 1.6595 24 6 4.0073 2.5982 0.6294 25 6 4.9450 2.5289 1.8364 26 6 3.4793 2.9266 2.0274 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.7673 0.2547 -1.8861 31 1 3.6743 2.0275 -2.0151 32 1 5.1701 1.2541 -1.4376 33 1 3.5170 -0.4376 1.2545 34 1 4.0711 -1.8655 2.2570 35 1 4.9755 -3.7405 3.5621 36 1 7.3968 -4.1245 3.6679 37 1 10.3426 0.3690 2.1143 38 1 8.0397 -0.7079 1.1251 39 1 4.1418 3.4273 -0.0654 40 1 5.2481 1.5406 2.1821 41 1 5.6962 3.3125 1.9359 42 1 3.2667 3.9718 2.2524 43 1 2.8175 2.2002 2.4989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172467201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:29 Heat of formation + Delta-G solvation = -77.952095 kcal Electronic energy + Delta-G solvation = -27171.391608 eV Core-core repulsion = 23375.258537 eV Total energy + Delta-G solvation = -3796.133071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.39427 -40.92660 -39.18730 -38.12454 -37.33176 -35.65368 -35.28564 -32.83657 -31.32375 -30.97873 -28.83488 -27.20506 -26.17162 -24.22373 -23.64525 -23.15014 -22.76176 -21.33392 -20.50417 -19.68444 -19.03067 -18.20015 -17.73017 -17.19818 -17.08551 -16.83686 -16.42970 -16.14641 -15.79813 -15.18991 -15.07114 -14.82997 -14.47352 -14.42460 -14.24412 -13.68545 -13.62981 -13.51748 -13.24957 -12.97650 -12.94441 -12.79250 -12.69525 -12.50887 -12.35132 -12.16104 -11.85526 -11.83845 -11.70554 -11.48728 -11.35593 -11.28190 -11.07259 -10.48488 -10.24328 -9.45471 -9.33999 -8.60223 -6.35926 0.41530 0.86630 1.04739 1.39017 1.44308 1.49945 1.52479 2.06684 2.13601 2.21671 2.81311 2.83615 3.41151 3.60983 3.71765 3.76778 3.97455 4.02796 4.06368 4.28911 4.34250 4.35751 4.44872 4.53482 4.62932 4.65073 4.68832 4.72558 4.91278 4.93197 5.04022 5.10656 5.12874 5.14122 5.20450 5.25963 5.34445 5.37739 5.55940 5.89152 5.95811 6.10770 6.31776 6.46200 6.54196 6.68517 6.91794 6.97854 7.32195 8.33921 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019078 B = 0.003798 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.340593 B = 7369.880494 C = 8127.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.477 3.523 4 O -0.502 6.502 5 C 0.222 3.778 6 C -0.162 4.162 7 N -0.711 5.711 8 C 0.577 3.423 9 O -0.555 6.555 10 C -0.139 4.139 11 C -0.199 4.199 12 C -0.097 4.097 13 C -0.218 4.218 14 C 0.065 3.935 15 C -0.496 4.496 16 H 0.081 0.919 17 C 0.030 3.970 18 N -0.823 5.823 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.124 4.124 24 C -0.152 4.152 25 C -0.166 4.166 26 C -0.153 4.153 27 H 0.133 0.867 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.413 0.587 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.286 0.714 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 2.036 -3.288 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.318 3.682 4 O -0.389 6.389 5 C 0.135 3.865 6 C -0.219 4.219 7 N -0.368 5.368 8 C 0.368 3.632 9 O -0.434 6.434 10 C -0.142 4.142 11 C -0.218 4.218 12 C -0.115 4.115 13 C -0.237 4.237 14 C 0.063 3.937 15 C -0.525 4.525 16 H 0.099 0.901 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.803 3.197 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.177 1.177 23 C -0.145 4.145 24 C -0.171 4.171 25 C -0.204 4.204 26 C -0.190 4.190 27 H 0.151 0.849 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.252 0.748 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.022 3.108 -3.732 15.788 hybrid contribution 0.654 -0.160 0.143 0.689 sum -14.368 2.948 -3.590 15.100 Atomic orbital electron populations 1.23659 0.73971 1.06063 1.02965 1.86528 1.25626 1.32054 1.83214 1.23326 0.90650 0.82034 0.72179 1.90663 1.66314 1.36783 1.45140 1.19633 0.84949 0.87202 0.94763 1.22238 1.04518 1.03637 0.91524 1.45807 1.06884 1.31206 1.52892 1.18359 0.81607 0.83717 0.79519 1.90671 1.59343 1.47515 1.45884 1.19756 0.94500 0.97383 1.02543 1.20842 0.98095 0.98368 1.04544 1.20882 0.94615 0.97425 0.98565 1.21402 0.94033 1.03557 1.04753 1.17950 0.94171 0.91712 0.89850 1.19872 0.91394 0.96718 1.44517 0.90082 1.26784 1.06017 0.93939 0.91689 1.69865 1.39208 1.00455 1.35375 0.85202 0.75842 0.79268 0.79425 1.19045 1.19518 1.17699 1.21557 0.93024 0.99975 0.99898 1.22425 1.05787 0.96738 0.92126 1.22962 0.93630 1.02496 1.01263 1.22990 0.95723 1.03064 0.97208 0.84913 0.91430 0.91452 0.90889 0.89470 0.89752 0.74850 0.85149 0.84685 0.87605 0.90370 0.87306 0.85741 0.90508 0.88932 0.86874 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -7.65 9.81 -51.41 -0.50 -8.16 16 3 C 0.48 12.08 6.24 71.24 0.44 12.53 16 4 O -0.50 -13.97 15.62 21.96 0.34 -13.62 16 5 C 0.22 6.29 0.84 2.86 0.00 6.30 16 6 C -0.16 -4.47 8.25 71.98 0.59 -3.88 16 7 N -0.71 -22.17 4.39 -429.12 -1.88 -24.05 16 8 C 0.58 23.45 4.88 86.80 0.42 23.87 16 9 O -0.56 -25.63 12.41 -3.88 -0.05 -25.67 16 10 C -0.14 -6.27 5.87 -20.14 -0.12 -6.38 16 11 C -0.20 -7.62 9.55 22.70 0.22 -7.41 16 12 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 13 C -0.22 -10.00 9.78 22.77 0.22 -9.78 16 14 C 0.07 3.48 5.59 -21.32 -0.12 3.36 16 15 C -0.50 -26.55 9.07 23.47 0.21 -26.34 16 16 H 0.08 4.12 7.89 -2.91 -0.02 4.10 16 17 C 0.03 1.56 5.22 85.26 0.44 2.00 16 18 N -0.82 -44.72 10.74 21.83 0.23 -44.49 16 19 Si 0.98 39.06 29.58 68.60 2.03 41.09 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 23 C -0.12 -6.64 8.23 23.01 0.19 -6.45 16 24 C -0.15 -4.41 4.36 -10.80 -0.05 -4.46 16 25 C -0.17 -5.48 8.42 30.62 0.26 -5.22 16 26 C -0.15 -4.06 9.37 30.62 0.29 -3.78 16 27 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.85 5.79 -2.39 -0.01 2.84 16 33 H 0.41 11.25 5.99 -92.71 -0.56 10.69 16 34 H 0.13 3.88 6.38 -2.91 -0.02 3.86 16 35 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 38 H 0.11 6.46 5.60 -2.91 -0.02 6.44 16 39 H 0.12 3.39 8.07 -2.39 -0.02 3.37 16 40 H 0.08 2.99 5.10 -2.39 -0.01 2.98 16 41 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 42 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.09 2.29 7.99 -2.39 -0.02 2.27 16 Total: -1.00 -64.88 354.29 5.09 -59.78 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: 0.49 Total: 42.75 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 4.43 Total: -27.63 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.65 Total: -68.54 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.21 Total: -47.45 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -64.88 5.09 -59.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172467201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.170 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds