Wall clock time and date at job start Tue Mar 31 2020 13:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 H 1.08994 * 109.46938 * 55.00110 * 3 2 1 5 5 C 1.50703 * 109.46955 * 175.00310 * 3 2 1 6 6 H 1.07999 * 119.99584 * 120.00021 * 5 3 2 7 7 C 1.37876 * 120.00281 * 300.00134 * 5 3 2 8 8 N 1.31518 * 119.99504 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00370 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47171 * 119.99704 * 9 7 5 12 12 H 1.48494 * 109.46971 * 239.99903 * 9 7 5 13 13 N 1.46498 * 109.47147 * 295.00260 * 3 2 1 14 14 C 1.34772 * 119.99914 * 84.99964 * 13 3 2 15 15 O 1.21276 * 120.00192 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99813 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.50185 * 274.92529 * 16 14 13 18 18 C 1.52914 * 109.53131 * 154.83338 * 16 14 13 19 19 C 1.50588 * 110.31924 * 289.89070 * 18 16 14 20 20 C 1.38091 * 119.90550 * 158.89790 * 19 18 16 21 21 C 1.38572 * 120.08402 * 179.03316 * 20 19 18 22 22 C 1.38392 * 120.48558 * 0.77304 * 21 20 19 23 23 C 1.38034 * 120.04296 * 359.56600 * 22 21 20 24 24 C 1.39404 * 119.65561 * 359.97438 * 23 22 21 25 25 C 1.48125 * 120.38574 * 179.84851 * 24 23 22 26 26 O 1.21473 * 121.45133 * 350.48461 * 25 24 23 27 27 O 1.35759 * 117.10026 * 170.20773 * 25 24 23 28 28 H 1.08997 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46632 * 299.99795 * 1 2 3 30 30 H 1.09001 * 109.47372 * 59.99536 * 1 2 3 31 31 H 1.09001 * 109.46632 * 240.00205 * 2 1 3 32 32 H 1.09001 * 109.47372 * 120.00464 * 2 1 3 33 33 H 0.97000 * 119.99800 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99807 * 264.99733 * 13 3 2 35 35 H 1.09001 * 109.46764 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46948 * 300.07182 * 17 16 14 37 37 H 1.08997 * 109.46910 * 60.07931 * 17 16 14 38 38 H 1.08994 * 109.32787 * 50.15020 * 18 16 14 39 39 H 1.09003 * 109.32516 * 169.80246 * 18 16 14 40 40 H 1.08000 * 119.93194 * 359.79962 * 20 19 18 41 41 H 1.07992 * 119.74712 * 180.25134 * 21 20 19 42 42 H 1.07994 * 119.98107 * 179.58348 * 22 21 20 43 43 H 1.07999 * 120.17042 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8782 1.2278 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8810 1.3816 10 1 6.5987 1.5471 0.1946 11 1 6.3992 1.6164 2.6100 12 1 6.4971 -0.5178 1.4627 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3668 15 8 -0.3391 2.6327 -0.4340 16 6 0.0367 3.3387 -2.6543 17 6 0.5448 4.7819 -2.6536 18 6 -1.4869 3.3340 -2.7836 19 6 -1.9860 1.9358 -3.0361 20 6 -3.2996 1.6130 -2.7581 21 6 -3.7680 0.3330 -3.0078 22 6 -2.9237 -0.6359 -3.5212 23 6 -1.6065 -0.3290 -3.7971 24 6 -1.1337 0.9601 -3.5564 25 6 0.2777 1.3062 -3.8435 26 8 1.0943 0.4530 -4.1278 27 8 0.6176 2.6191 -3.7807 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8294 -0.0615 2.9496 34 1 2.2720 2.1232 -1.9977 35 1 0.2559 5.2692 -3.5848 36 1 0.1099 5.3197 -1.8111 37 1 1.6311 4.7846 -2.5648 38 1 -1.9283 3.7138 -1.8623 39 1 -1.7804 3.9748 -3.6152 40 1 -3.9655 2.3628 -2.3573 41 1 -4.7973 0.0876 -2.7922 42 1 -3.2957 -1.6328 -3.7063 43 1 -0.9460 -1.0835 -4.1982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183808157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:37 Heat of formation + Delta-G solvation = -95.397783 kcal Electronic energy + Delta-G solvation = -28341.147837 eV Core-core repulsion = 24544.258264 eV Total energy + Delta-G solvation = -3796.889573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36394 -39.04255 -38.37152 -37.13869 -35.22492 -33.35988 -32.44469 -31.68229 -31.20746 -30.68229 -27.13701 -26.83038 -24.45628 -23.88452 -22.77630 -21.88345 -21.43451 -19.59428 -19.10226 -18.43274 -16.91341 -16.77594 -16.17780 -15.92043 -15.48186 -15.25010 -14.70291 -14.53777 -14.37982 -14.14246 -13.96271 -13.56287 -13.51787 -12.80250 -12.70337 -12.67596 -12.31391 -12.17192 -12.11098 -11.83460 -11.76334 -11.48294 -11.28223 -11.21810 -11.08801 -10.95696 -10.83854 -10.30182 -10.20167 -9.98973 -9.64226 -9.10079 -9.08071 -9.03325 -8.84497 -8.50700 -7.91570 -6.12248 -4.21191 0.60783 1.22959 2.22820 2.91742 3.22364 3.25354 3.32977 3.36623 3.65487 3.80825 4.13958 4.27979 4.35907 4.44194 4.77785 4.87858 4.98033 5.16808 5.18493 5.20363 5.34401 5.41161 5.48360 5.58311 5.60837 5.75827 5.86672 5.99903 6.14167 6.21295 6.29508 6.38439 6.44903 6.64136 6.73066 6.88028 7.04937 7.15466 7.30466 7.37359 7.50847 7.60258 7.70637 7.87303 8.15970 8.54721 8.72100 8.97097 9.45380 10.93237 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.004795 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.862499 B = 5838.186115 C = 6257.645860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.692 5.692 14 C 0.480 3.520 15 O -0.530 6.530 16 C 0.106 3.894 17 C -0.137 4.137 18 C -0.099 4.099 19 C -0.026 4.026 20 C -0.124 4.124 21 C -0.083 4.083 22 C -0.136 4.136 23 C -0.048 4.048 24 C -0.171 4.171 25 C 0.526 3.474 26 O -0.436 6.436 27 O -0.352 6.352 28 H 0.022 0.978 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.101 0.899 33 H 0.264 0.736 34 H 0.394 0.606 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.481 4.614 -11.599 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.340 5.340 14 C 0.262 3.738 15 O -0.408 6.408 16 C 0.066 3.934 17 C -0.195 4.195 18 C -0.136 4.136 19 C -0.027 4.027 20 C -0.142 4.142 21 C -0.101 4.101 22 C -0.154 4.154 23 C -0.066 4.066 24 C -0.173 4.173 25 C 0.367 3.633 26 O -0.318 6.318 27 O -0.272 6.272 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.445 4.158 -10.983 17.851 hybrid contribution 1.172 -0.203 -0.134 1.197 sum -12.273 3.954 -11.117 17.025 Atomic orbital electron populations 1.21830 0.98390 0.98079 1.00981 1.21930 0.92551 0.99688 1.02467 1.18871 0.94512 0.89254 0.80428 0.93143 1.21254 0.90541 1.39014 1.06263 0.91956 1.24871 0.98690 0.94696 0.95332 1.69905 1.35068 1.37708 1.09373 0.86385 0.84786 0.77842 0.78091 1.19653 1.20881 1.20833 1.46618 1.14151 1.54268 1.18968 1.20442 0.83789 0.80623 0.88976 1.90698 1.51277 1.59290 1.39570 1.22741 0.93395 0.94320 0.82956 1.21813 1.03501 0.90215 1.03935 1.21052 0.93098 0.94215 1.05228 1.19928 0.93830 0.94405 0.94498 1.21018 0.94734 0.97257 1.01181 1.21417 0.99851 0.92979 0.95839 1.21148 0.93477 0.99857 1.00943 1.21232 0.95740 0.94528 0.95115 1.20058 0.94078 0.95938 1.07234 1.20944 0.87289 0.81108 0.73930 1.90827 1.54406 1.45650 1.40872 1.87028 1.71497 1.22026 1.46618 0.95893 0.93262 0.94406 0.94910 0.88136 0.92622 0.77273 0.90298 0.89187 0.90231 0.86625 0.88094 0.85050 0.85384 0.85158 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.23 5.45 -26.73 -0.15 -3.38 16 3 C 0.27 6.94 2.24 -69.08 -0.15 6.79 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.69 -15.09 4.60 -54.93 -0.25 -15.34 16 14 C 0.48 9.34 4.01 -10.99 -0.04 9.30 16 15 O -0.53 -11.53 13.00 5.56 0.07 -11.45 16 16 C 0.11 1.58 1.06 -91.81 -0.10 1.48 16 17 C -0.14 -1.58 8.82 37.16 0.33 -1.26 16 18 C -0.10 -1.22 4.51 -27.98 -0.13 -1.34 16 19 C -0.03 -0.36 5.46 -104.22 -0.57 -0.93 16 20 C -0.12 -1.42 9.73 -39.51 -0.38 -1.80 16 21 C -0.08 -0.86 10.04 -39.40 -0.40 -1.26 16 22 C -0.14 -1.53 10.04 -39.60 -0.40 -1.93 16 23 C -0.05 -0.67 9.64 -39.22 -0.38 -1.05 16 24 C -0.17 -2.68 5.28 -104.89 -0.55 -3.23 16 25 C 0.53 9.39 6.61 34.79 0.23 9.62 16 26 O -0.44 -8.85 17.40 -19.08 -0.33 -9.18 16 27 O -0.35 -5.76 9.57 -43.46 -0.42 -6.18 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.04 0.84 5.25 -51.93 -0.27 0.57 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.78 5.95 -51.93 -0.31 2.47 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.39 8.32 7.89 -40.82 -0.32 8.00 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.12 1.38 7.48 -51.93 -0.39 0.99 16 39 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.14 1.83 7.77 -52.49 -0.41 1.42 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -31.95 350.93 -8.65 -40.60 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.85 Total: 9.35 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.77 Total: -4.77 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.37 Total: -39.66 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.68 Total: -26.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.95 -8.65 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183808157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.798 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds