Wall clock time and date at job start Tue Mar 31 2020 13:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 H 1.08994 * 109.46938 * 55.00110 * 3 2 1 5 5 C 1.50703 * 109.46955 * 175.00310 * 3 2 1 6 6 H 1.07999 * 119.99584 * 120.00021 * 5 3 2 7 7 C 1.37876 * 120.00281 * 300.00134 * 5 3 2 8 8 N 1.31518 * 119.99504 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00370 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47171 * 119.99704 * 9 7 5 12 12 H 1.48494 * 109.46971 * 239.99903 * 9 7 5 13 13 N 1.46498 * 109.47147 * 295.00260 * 3 2 1 14 14 C 1.34772 * 119.99914 * 84.99964 * 13 3 2 15 15 O 1.21276 * 120.00192 * 0.02562 * 14 13 3 16 16 C 1.50704 * 119.99813 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.50185 * 274.92529 * 16 14 13 18 18 C 1.52914 * 109.53131 * 154.83338 * 16 14 13 19 19 C 1.50588 * 110.31924 * 289.89070 * 18 16 14 20 20 C 1.38091 * 119.90550 * 158.89790 * 19 18 16 21 21 C 1.38572 * 120.08402 * 179.03316 * 20 19 18 22 22 C 1.38392 * 120.48558 * 0.77304 * 21 20 19 23 23 C 1.38034 * 120.04296 * 359.56600 * 22 21 20 24 24 C 1.39404 * 119.65561 * 359.97438 * 23 22 21 25 25 C 1.48125 * 120.38574 * 179.84851 * 24 23 22 26 26 O 1.21473 * 121.45133 * 350.48461 * 25 24 23 27 27 O 1.35759 * 117.10026 * 170.20773 * 25 24 23 28 28 H 1.08997 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46632 * 299.99795 * 1 2 3 30 30 H 1.09001 * 109.47372 * 59.99536 * 1 2 3 31 31 H 1.09001 * 109.46632 * 240.00205 * 2 1 3 32 32 H 1.09001 * 109.47372 * 120.00464 * 2 1 3 33 33 H 0.97000 * 119.99800 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99807 * 264.99733 * 13 3 2 35 35 H 1.09001 * 109.46764 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46948 * 300.07182 * 17 16 14 37 37 H 1.08997 * 109.46910 * 60.07931 * 17 16 14 38 38 H 1.08994 * 109.32787 * 50.15020 * 18 16 14 39 39 H 1.09003 * 109.32516 * 169.80246 * 18 16 14 40 40 H 1.08000 * 119.93194 * 359.79962 * 20 19 18 41 41 H 1.07992 * 119.74712 * 180.25134 * 21 20 19 42 42 H 1.07994 * 119.98107 * 179.58348 * 22 21 20 43 43 H 1.07999 * 120.17042 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8782 1.2278 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8810 1.3816 10 1 6.5987 1.5471 0.1946 11 1 6.3992 1.6164 2.6100 12 1 6.4971 -0.5178 1.4627 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3668 15 8 -0.3391 2.6327 -0.4340 16 6 0.0367 3.3387 -2.6543 17 6 0.5448 4.7819 -2.6536 18 6 -1.4869 3.3340 -2.7836 19 6 -1.9860 1.9358 -3.0361 20 6 -3.2996 1.6130 -2.7581 21 6 -3.7680 0.3330 -3.0078 22 6 -2.9237 -0.6359 -3.5212 23 6 -1.6065 -0.3290 -3.7971 24 6 -1.1337 0.9601 -3.5564 25 6 0.2777 1.3062 -3.8435 26 8 1.0943 0.4530 -4.1278 27 8 0.6176 2.6191 -3.7807 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8294 -0.0615 2.9496 34 1 2.2720 2.1232 -1.9977 35 1 0.2559 5.2692 -3.5848 36 1 0.1099 5.3197 -1.8111 37 1 1.6311 4.7846 -2.5648 38 1 -1.9283 3.7138 -1.8623 39 1 -1.7804 3.9748 -3.6152 40 1 -3.9655 2.3628 -2.3573 41 1 -4.7973 0.0876 -2.7922 42 1 -3.2957 -1.6328 -3.7063 43 1 -0.9460 -1.0835 -4.1982 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183808157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:36 Heat of formation + Delta-G solvation = -114.632501 kcal Electronic energy + Delta-G solvation = -28341.981917 eV Core-core repulsion = 24544.258264 eV Total energy + Delta-G solvation = -3797.723653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.61678 -40.50547 -39.47957 -38.54919 -37.07850 -34.54004 -34.32377 -33.11352 -32.28700 -32.13732 -29.10764 -27.78882 -25.74757 -25.34908 -24.43266 -22.91211 -22.80201 -21.49316 -20.61308 -19.65792 -18.48267 -18.01000 -17.57004 -17.45818 -17.21147 -16.49001 -16.28325 -15.89782 -15.65544 -15.46810 -15.13527 -14.97842 -14.67669 -14.62927 -13.99337 -13.76815 -13.72283 -13.43752 -13.30585 -13.16503 -13.08556 -12.99545 -12.91815 -12.87256 -12.74757 -12.43445 -12.20809 -12.14152 -12.08843 -11.68655 -11.19061 -11.12258 -10.68667 -10.55323 -10.07274 -9.77822 -9.77714 -8.21904 -6.38938 -0.46618 0.31165 1.03088 1.39559 1.40742 1.48511 1.53356 1.89680 2.27180 2.45151 2.70514 2.99392 3.07306 3.26065 3.41539 3.62405 3.85434 3.95690 4.14500 4.31945 4.38969 4.42153 4.47104 4.55584 4.58634 4.64178 4.66849 4.71552 4.86126 4.96668 4.97286 5.10794 5.14425 5.20557 5.30801 5.32730 5.40788 5.42707 5.51926 5.61707 5.71031 5.81273 5.87100 6.07678 6.20661 6.66105 6.76499 7.19879 7.36019 8.83784 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.004795 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.862499 B = 5838.186115 C = 6257.645860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.281 3.719 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.279 1.279 13 N -0.701 5.701 14 C 0.478 3.522 15 O -0.553 6.553 16 C 0.110 3.890 17 C -0.136 4.136 18 C -0.096 4.096 19 C -0.041 4.041 20 C -0.126 4.126 21 C -0.072 4.072 22 C -0.136 4.136 23 C -0.068 4.068 24 C -0.204 4.204 25 C 0.521 3.479 26 O -0.480 6.480 27 O -0.356 6.356 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.267 0.733 34 H 0.396 0.604 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.463 5.696 -12.389 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.029 0.971 5 C -0.590 4.590 6 H 0.081 0.919 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.204 1.204 13 N -0.349 5.349 14 C 0.262 3.738 15 O -0.433 6.433 16 C 0.070 3.930 17 C -0.193 4.193 18 C -0.133 4.133 19 C -0.041 4.041 20 C -0.144 4.144 21 C -0.090 4.090 22 C -0.154 4.154 23 C -0.086 4.086 24 C -0.205 4.205 25 C 0.365 3.635 26 O -0.365 6.365 27 O -0.276 6.276 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.229 0.771 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.180 0.820 41 H 0.185 0.815 42 H 0.176 0.824 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.454 5.272 -11.793 20.142 hybrid contribution 1.678 -0.544 0.124 1.769 sum -13.775 4.729 -11.669 18.662 Atomic orbital electron populations 1.21647 0.96516 0.99022 1.00463 1.21759 0.94150 0.99314 1.00566 1.18416 0.93814 0.88974 0.80945 0.97105 1.21551 0.91454 1.39343 1.06623 0.91871 1.25717 1.03349 0.94115 0.94876 1.70028 1.36978 1.38150 1.09835 0.85341 0.79084 0.77928 0.78289 1.18955 1.20205 1.20440 1.46453 1.15549 1.55139 1.17711 1.21295 0.82341 0.79525 0.90616 1.90672 1.51579 1.59884 1.41170 1.22934 0.95541 0.94828 0.79675 1.21943 1.02845 0.88066 1.06472 1.21193 0.90453 0.94442 1.07179 1.20209 0.94725 0.94584 0.94569 1.21453 0.94101 0.98531 1.00321 1.21926 1.01392 0.92158 0.93528 1.21514 0.92283 1.01556 1.00004 1.21379 0.97176 0.94020 0.96030 1.20070 0.93027 0.97429 1.09992 1.21474 0.88219 0.81118 0.72724 1.90786 1.55701 1.46777 1.43219 1.87009 1.72178 1.21663 1.46757 0.94157 0.94642 0.93825 0.95955 0.90587 0.92406 0.77070 0.86669 0.87844 0.91405 0.85895 0.84094 0.82007 0.81544 0.82399 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.52 71.98 0.61 -4.99 16 2 C -0.12 -6.28 5.45 30.59 0.17 -6.11 16 3 C 0.28 15.06 2.24 44.25 0.10 15.16 16 4 H 0.01 0.67 7.58 -2.39 -0.02 0.66 16 5 C -0.55 -30.78 8.73 25.60 0.22 -30.56 16 6 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -52.94 11.29 21.45 0.24 -52.70 16 9 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 N -0.70 -31.60 4.60 -446.11 -2.05 -33.65 16 14 C 0.48 18.74 4.01 87.66 0.35 19.09 16 15 O -0.55 -24.21 13.00 -3.02 -0.04 -24.25 16 16 C 0.11 3.13 1.06 -11.57 -0.01 3.12 16 17 C -0.14 -2.84 8.82 71.98 0.63 -2.21 16 18 C -0.10 -2.10 4.51 29.78 0.13 -1.96 16 19 C -0.04 -1.03 5.46 -19.60 -0.11 -1.13 16 20 C -0.13 -2.43 9.73 22.31 0.22 -2.21 16 21 C -0.07 -1.22 10.04 22.39 0.22 -1.00 16 22 C -0.14 -2.73 10.04 22.26 0.22 -2.50 16 23 C -0.07 -1.87 9.64 22.50 0.22 -1.66 16 24 C -0.20 -6.30 5.28 -20.04 -0.11 -6.41 16 25 C 0.52 19.06 6.61 70.45 0.47 19.53 16 26 O -0.48 -20.57 17.40 19.77 0.34 -20.22 16 27 O -0.36 -11.63 9.57 -67.45 -0.65 -12.28 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.73 7.85 -2.39 -0.02 1.71 16 30 H 0.04 1.98 5.25 -2.39 -0.01 1.97 16 31 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 4.39 5.95 -2.39 -0.01 4.38 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.40 17.44 7.89 -92.71 -0.73 16.71 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.12 2.55 7.48 -2.39 -0.02 2.53 16 39 H 0.14 1.95 8.11 -2.39 -0.02 1.93 16 40 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 42 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.13 3.57 7.77 -2.91 -0.02 3.55 16 Total: -1.00 -73.39 350.93 3.98 -69.41 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.31 Total: 30.31 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 3.79 Total: -2.29 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -1.81 Total: -86.35 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -0.34 Total: -56.75 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.39 3.98 -69.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183808157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.223 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds