Wall clock time and date at job start Tue Mar 31 2020 13:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48509 * 109.47095 * 155.08971 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21721 * 119.99974 * 359.97438 * 14 13 3 16 16 C 1.46243 * 120.00047 * 180.02562 * 14 13 3 17 17 C 1.35589 * 120.14668 * 180.02562 * 16 14 13 18 18 C 1.47117 * 117.88295 * 180.87689 * 17 16 14 19 19 C 1.39455 * 121.43842 * 196.14502 * 18 17 16 20 20 C 1.38385 * 119.47454 * 179.97438 * 19 18 17 21 21 O 1.35988 * 119.88505 * 180.02562 * 20 19 18 22 22 C 1.42903 * 116.99984 * 180.02562 * 21 20 19 23 23 C 1.38996 * 120.23249 * 359.97438 * 20 19 18 24 24 C 1.38221 * 120.57314 * 0.04578 * 23 20 19 25 25 C 1.38329 * 119.93793 * 359.97438 * 24 23 20 26 26 O 1.35667 * 121.24639 * 179.97438 * 25 24 23 27 27 C 1.43080 * 117.16390 * 145.82040 * 26 25 24 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 32 32 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 33 33 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 35 35 H 1.08001 * 121.05580 * 0.84450 * 17 16 14 36 36 H 1.07999 * 120.25950 * 359.94576 * 19 18 17 37 37 H 1.09000 * 109.46813 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.46568 * 299.99637 * 22 21 20 39 39 H 1.08992 * 109.47283 * 59.99345 * 22 21 20 40 40 H 1.07995 * 119.71304 * 180.02562 * 23 20 19 41 41 H 1.08000 * 120.02650 * 180.02562 * 24 23 20 42 42 H 1.09003 * 109.50381 * 288.37011 * 27 26 25 43 43 H 1.08994 * 109.26033 * 168.88295 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7501 1.2553 4.0966 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3377 2.6301 -0.4608 16 6 0.0759 3.3078 -2.6448 17 6 -1.1465 3.8790 -2.7788 18 6 -1.4776 4.5004 -4.0706 19 6 -2.5481 5.3849 -4.1991 20 6 -2.8230 5.9464 -5.4336 21 8 -3.8644 6.8104 -5.5683 22 6 -4.0929 7.3532 -6.8703 23 6 -2.0376 5.6313 -6.5363 24 6 -0.9755 4.7550 -6.4156 25 6 -0.6872 4.1845 -5.1889 26 8 0.3485 3.3208 -5.0404 27 6 1.0506 3.3509 -3.7941 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8280 1.5270 2.3971 34 1 2.2931 2.1156 -1.9978 35 1 -1.8546 3.8774 -1.9634 36 1 -3.1580 5.6293 -3.3419 37 1 -4.9509 8.0247 -6.8386 38 1 -3.2106 7.9054 -7.1936 39 1 -4.2917 6.5431 -7.5719 40 1 -2.2594 6.0747 -7.4957 41 1 -0.3708 4.5167 -7.2781 42 1 1.6431 4.2637 -3.7321 43 1 1.7149 2.4888 -3.7348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183841827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:11 Heat of formation + Delta-G solvation = -70.466475 kcal Electronic energy + Delta-G solvation = -26073.303141 eV Core-core repulsion = 22277.494670 eV Total energy + Delta-G solvation = -3795.808470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02326 -39.72864 -38.94687 -36.57133 -35.38528 -34.01426 -32.45911 -31.74805 -30.69501 -30.04126 -27.64678 -27.48110 -25.90323 -24.19432 -22.83559 -22.73626 -21.24776 -19.76823 -19.05722 -18.27619 -17.70691 -17.51931 -16.66496 -16.13579 -15.96300 -15.76523 -15.41600 -14.85363 -14.71458 -14.57683 -14.08794 -13.75687 -13.61153 -13.43754 -13.13555 -12.89840 -12.79067 -12.43735 -12.37713 -11.99145 -11.88501 -11.78327 -11.61523 -11.21185 -10.97263 -10.78906 -10.70530 -10.65439 -10.09245 -9.99207 -9.88114 -9.31169 -9.21942 -8.74414 -8.68704 -8.10629 -7.85238 -6.26126 -4.30175 0.32367 1.13042 1.82357 2.92027 3.12662 3.24834 3.32882 3.40147 3.52555 3.73549 3.87631 4.30404 4.39838 4.47667 4.53477 4.65608 4.79116 4.80031 4.91675 5.03528 5.10774 5.11102 5.19654 5.35604 5.49977 5.58338 5.64078 5.85024 5.98360 6.03972 6.07654 6.12696 6.21245 6.28885 6.39439 6.63179 6.77033 6.92751 6.97806 6.98922 7.22095 7.25608 7.30858 7.50125 8.07759 8.48956 8.72859 8.86673 9.35484 10.85434 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.002814 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.762290 B = 9948.669280 C =10204.569612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.286 1.286 13 N -0.695 5.695 14 C 0.545 3.455 15 O -0.548 6.548 16 C -0.202 4.202 17 C -0.027 4.027 18 C -0.096 4.096 19 C -0.097 4.097 20 C 0.096 3.904 21 O -0.317 6.317 22 C 0.027 3.973 23 C -0.169 4.169 24 C -0.106 4.106 25 C 0.102 3.898 26 O -0.306 6.306 27 C 0.104 3.896 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.268 0.732 34 H 0.392 0.608 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.079 0.921 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 9.049 -17.471 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.135 3.865 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.182 1.182 12 H -0.212 1.212 13 N -0.343 5.343 14 C 0.332 3.668 15 O -0.429 6.429 16 C -0.206 4.206 17 C -0.046 4.046 18 C -0.097 4.097 19 C -0.115 4.115 20 C 0.052 3.948 21 O -0.231 6.231 22 C -0.068 4.068 23 C -0.188 4.188 24 C -0.124 4.124 25 C 0.056 3.944 26 O -0.220 6.220 27 C 0.029 3.971 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.097 0.903 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.300 8.923 -16.637 24.300 hybrid contribution -0.045 0.215 0.422 0.476 sum -15.345 9.138 -16.214 24.122 Atomic orbital electron populations 1.21909 0.97404 0.98929 1.02022 1.22093 0.93696 0.99346 1.01350 1.19196 0.95639 0.89129 0.82538 0.93053 1.20991 0.88529 1.52499 0.95023 0.90287 1.24915 0.94880 0.93579 0.98871 1.69876 1.09616 1.48470 1.24429 0.86926 0.81322 0.79534 0.82367 1.19855 1.18225 1.21179 1.46563 1.14060 1.55395 1.18331 1.17716 0.83103 0.79362 0.86665 1.90789 1.50930 1.60503 1.40644 1.22776 0.97674 1.03396 0.96729 1.22232 0.95937 0.91966 0.94515 1.18956 0.96628 1.00231 0.93874 1.20295 0.97589 0.97561 0.96075 1.18795 0.89215 0.92826 0.93988 1.86096 1.46629 1.58024 1.32364 1.23053 1.02139 0.98409 0.83192 1.21156 0.97359 1.01866 0.98412 1.20308 0.98920 0.96681 0.96519 1.19008 0.89143 0.92444 0.93765 1.86064 1.43435 1.55923 1.36628 1.21800 0.91791 1.04371 0.79093 0.93196 0.95032 0.93082 0.92912 0.91973 0.92198 0.77386 0.83235 0.84171 0.88244 0.92636 0.92647 0.84716 0.84431 0.90343 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.53 37.16 0.32 -2.59 16 2 C -0.13 -2.70 5.54 -26.73 -0.15 -2.85 16 3 C 0.24 5.50 1.82 -69.08 -0.13 5.37 16 4 H 0.05 1.31 4.92 -51.93 -0.26 1.05 16 5 C -0.53 -13.98 9.05 -34.44 -0.31 -14.29 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 9 Si 0.87 21.29 26.69 -169.99 -4.54 16.75 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.26 -6.17 6.88 56.52 0.39 -5.79 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 N -0.70 -13.62 4.97 -56.38 -0.28 -13.90 16 14 C 0.55 10.36 6.32 -13.04 -0.08 10.28 16 15 O -0.55 -12.01 13.42 5.17 0.07 -11.94 16 16 C -0.20 -3.12 5.96 -102.33 -0.61 -3.73 16 17 C -0.03 -0.38 9.61 -36.93 -0.35 -0.74 16 18 C -0.10 -1.24 5.80 -104.97 -0.61 -1.85 16 19 C -0.10 -1.11 9.79 -39.07 -0.38 -1.50 16 20 C 0.10 1.01 6.68 -39.25 -0.26 0.75 16 21 O -0.32 -3.06 10.49 -19.70 -0.21 -3.26 16 22 C 0.03 0.15 9.81 101.05 0.99 1.14 16 23 C -0.17 -1.54 9.02 -39.31 -0.35 -1.90 16 24 C -0.11 -1.08 10.00 -39.55 -0.40 -1.48 16 25 C 0.10 1.29 6.46 -38.68 -0.25 1.04 16 26 O -0.31 -4.11 10.42 -18.70 -0.19 -4.30 16 27 C 0.10 1.35 6.59 36.03 0.24 1.59 16 28 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.38 7.90 -51.93 -0.41 0.97 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.39 6.68 6.64 -40.82 -0.27 6.41 16 35 H 0.15 2.12 7.61 -52.49 -0.40 1.72 16 36 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 39 H 0.05 0.24 7.65 -51.93 -0.40 -0.15 16 40 H 0.14 0.83 6.25 -52.49 -0.33 0.51 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.12 1.39 6.59 -51.93 -0.34 1.05 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -31.92 351.27 -7.13 -39.05 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.61 Total: 5.92 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.44 Total: -8.59 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.49 Total: -38.92 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.33 Total: -19.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.54 Total: 16.75 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.92 -7.13 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.414 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds