Wall clock time and date at job start Tue Mar 31 2020 13:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48509 * 109.47095 * 155.08971 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21721 * 119.99974 * 359.97438 * 14 13 3 16 16 C 1.46243 * 120.00047 * 180.02562 * 14 13 3 17 17 C 1.35589 * 120.14668 * 180.02562 * 16 14 13 18 18 C 1.47117 * 117.88295 * 180.87689 * 17 16 14 19 19 C 1.39455 * 121.43842 * 196.14502 * 18 17 16 20 20 C 1.38385 * 119.47454 * 179.97438 * 19 18 17 21 21 O 1.35988 * 119.88505 * 180.02562 * 20 19 18 22 22 C 1.42903 * 116.99984 * 180.02562 * 21 20 19 23 23 C 1.38996 * 120.23249 * 359.97438 * 20 19 18 24 24 C 1.38221 * 120.57314 * 0.04578 * 23 20 19 25 25 C 1.38329 * 119.93793 * 359.97438 * 24 23 20 26 26 O 1.35667 * 121.24639 * 179.97438 * 25 24 23 27 27 C 1.43080 * 117.16390 * 145.82040 * 26 25 24 28 28 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 29 29 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 31 31 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 32 32 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 33 33 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 35 35 H 1.08001 * 121.05580 * 0.84450 * 17 16 14 36 36 H 1.07999 * 120.25950 * 359.94576 * 19 18 17 37 37 H 1.09000 * 109.46813 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.46568 * 299.99637 * 22 21 20 39 39 H 1.08992 * 109.47283 * 59.99345 * 22 21 20 40 40 H 1.07995 * 119.71304 * 180.02562 * 23 20 19 41 41 H 1.08000 * 120.02650 * 180.02562 * 24 23 20 42 42 H 1.09003 * 109.50381 * 288.37011 * 27 26 25 43 43 H 1.08994 * 109.26033 * 168.88295 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7501 1.2553 4.0966 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3377 2.6301 -0.4608 16 6 0.0759 3.3078 -2.6448 17 6 -1.1465 3.8790 -2.7788 18 6 -1.4776 4.5004 -4.0706 19 6 -2.5481 5.3849 -4.1991 20 6 -2.8230 5.9464 -5.4336 21 8 -3.8644 6.8104 -5.5683 22 6 -4.0929 7.3532 -6.8703 23 6 -2.0376 5.6313 -6.5363 24 6 -0.9755 4.7550 -6.4156 25 6 -0.6872 4.1845 -5.1889 26 8 0.3485 3.3208 -5.0404 27 6 1.0506 3.3509 -3.7941 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8280 1.5270 2.3971 34 1 2.2931 2.1156 -1.9978 35 1 -1.8546 3.8774 -1.9634 36 1 -3.1580 5.6293 -3.3419 37 1 -4.9509 8.0247 -6.8386 38 1 -3.2106 7.9054 -7.1936 39 1 -4.2917 6.5431 -7.5719 40 1 -2.2594 6.0747 -7.4957 41 1 -0.3708 4.5167 -7.2781 42 1 1.6431 4.2637 -3.7321 43 1 1.7149 2.4888 -3.7348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183841827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:10 Heat of formation + Delta-G solvation = -91.472633 kcal Electronic energy + Delta-G solvation = -26074.214036 eV Core-core repulsion = 22277.494670 eV Total energy + Delta-G solvation = -3796.719366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97628 -40.85675 -40.08637 -37.39338 -37.10081 -35.16950 -34.42525 -33.29121 -31.68314 -30.95405 -29.42750 -28.09305 -26.89160 -25.49604 -24.44076 -23.67891 -22.51365 -21.45332 -20.32205 -19.21660 -19.06957 -18.43677 -18.16306 -17.38715 -17.14270 -16.70082 -16.48511 -16.17331 -16.11316 -15.67313 -15.50150 -14.99951 -14.78518 -14.59555 -14.31933 -14.10163 -13.97064 -13.78521 -13.66880 -13.63910 -13.05617 -12.92797 -12.79745 -12.59599 -12.43376 -12.35078 -11.99280 -11.86512 -11.73827 -11.62155 -11.22146 -10.99375 -10.85851 -10.77753 -9.84005 -9.56297 -8.76478 -8.39114 -6.44904 -0.68487 0.29669 0.79025 1.28920 1.33742 1.44358 2.06887 2.23019 2.26895 2.41808 2.45206 2.69316 3.01627 3.40874 3.53158 3.64832 3.85829 3.99909 4.07334 4.22115 4.30530 4.33741 4.40154 4.42558 4.46176 4.51839 4.57644 4.63120 4.79110 4.80252 4.83816 4.94520 5.06804 5.12336 5.20129 5.22041 5.26184 5.35593 5.40084 5.45469 5.54311 5.71065 6.11694 6.17425 6.43133 6.59580 6.82589 7.19662 7.36877 8.75668 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.002814 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.762290 B = 9948.669280 C =10204.569612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.242 3.758 4 H 0.031 0.969 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.035 3.965 8 N -0.929 5.929 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.253 1.253 12 H -0.278 1.278 13 N -0.695 5.695 14 C 0.548 3.452 15 O -0.581 6.581 16 C -0.224 4.224 17 C -0.010 4.010 18 C -0.117 4.117 19 C -0.105 4.105 20 C 0.094 3.906 21 O -0.334 6.334 22 C 0.015 3.985 23 C -0.153 4.153 24 C -0.104 4.104 25 C 0.082 3.918 26 O -0.313 6.313 27 C 0.109 3.891 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.404 0.596 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.089 0.911 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.708 9.945 -19.821 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C 0.138 3.862 4 H 0.049 0.951 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.166 4.166 8 N -0.567 5.567 9 Si 0.747 3.253 10 H -0.202 1.202 11 H -0.177 1.177 12 H -0.204 1.204 13 N -0.344 5.344 14 C 0.337 3.663 15 O -0.465 6.465 16 C -0.227 4.227 17 C -0.029 4.029 18 C -0.118 4.118 19 C -0.124 4.124 20 C 0.048 3.952 21 O -0.248 6.248 22 C -0.079 4.079 23 C -0.172 4.172 24 C -0.122 4.122 25 C 0.037 3.963 26 O -0.227 6.227 27 C 0.034 3.966 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.240 0.760 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.188 0.812 41 H 0.179 0.821 42 H 0.107 0.893 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.105 9.828 -19.023 27.405 hybrid contribution 0.358 0.066 0.958 1.025 sum -16.748 9.893 -18.065 26.546 Atomic orbital electron populations 1.21775 0.95974 1.00324 1.01076 1.22009 0.94881 0.97945 1.01450 1.18938 0.93457 0.90279 0.83491 0.95137 1.21189 0.90072 1.51010 0.94183 0.92287 1.25554 0.95723 0.93855 1.01433 1.69970 1.11037 1.50573 1.25136 0.86123 0.80125 0.79197 0.79842 1.20171 1.17664 1.20374 1.46280 1.14928 1.55665 1.17572 1.18110 0.82171 0.78525 0.87488 1.90763 1.51747 1.61736 1.42208 1.22543 0.98964 1.05198 0.96039 1.22378 0.95205 0.90224 0.95132 1.18907 0.97984 1.01656 0.93237 1.20418 0.97287 0.97510 0.97157 1.18909 0.89603 0.92723 0.93915 1.86089 1.46109 1.57739 1.34896 1.23396 1.03552 0.99235 0.81690 1.21544 0.95818 1.00419 0.99390 1.20643 0.99235 0.96078 0.96238 1.19340 0.89141 0.93097 0.94689 1.86044 1.43772 1.56512 1.36369 1.21802 0.91226 1.05315 0.78241 0.93475 0.92384 0.94682 0.91811 0.92867 0.92040 0.75983 0.83751 0.83777 0.86533 0.91310 0.91271 0.81250 0.82145 0.89290 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 8.53 71.98 0.61 -4.63 16 2 C -0.12 -5.26 5.54 30.59 0.17 -5.09 16 3 C 0.24 11.29 1.82 44.25 0.08 11.37 16 4 H 0.03 1.57 4.92 -2.39 -0.01 1.56 16 5 C -0.53 -28.07 9.05 25.60 0.23 -27.83 16 6 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 7 C 0.03 1.95 5.47 84.65 0.46 2.41 16 8 N -0.93 -54.98 13.96 21.45 0.30 -54.68 16 9 Si 0.92 44.43 26.69 68.60 1.83 46.26 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.25 -11.85 6.88 99.48 0.68 -11.16 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.70 -27.35 4.97 -450.49 -2.24 -29.59 16 14 C 0.55 20.97 6.32 86.32 0.55 21.51 16 15 O -0.58 -25.82 13.42 -4.42 -0.06 -25.88 16 16 C -0.22 -6.88 5.96 -18.38 -0.11 -6.99 16 17 C -0.01 -0.28 9.61 23.99 0.23 -0.05 16 18 C -0.12 -2.93 5.80 -20.09 -0.12 -3.04 16 19 C -0.11 -2.30 9.79 22.60 0.22 -2.08 16 20 C 0.09 1.74 6.68 22.49 0.15 1.89 16 21 O -0.33 -5.58 10.49 -93.41 -0.98 -6.56 16 22 C 0.02 0.11 9.81 113.37 1.11 1.22 16 23 C -0.15 -2.24 9.02 22.45 0.20 -2.04 16 24 C -0.10 -1.81 10.00 22.29 0.22 -1.59 16 25 C 0.08 1.96 6.46 22.85 0.15 2.10 16 26 O -0.31 -7.97 10.42 -89.84 -0.94 -8.90 16 27 C 0.11 2.74 6.59 71.25 0.47 3.21 16 28 H 0.05 1.85 5.63 -2.39 -0.01 1.84 16 29 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.03 1.46 7.88 -2.39 -0.02 1.44 16 31 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.05 2.33 7.90 -2.38 -0.02 2.31 16 33 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.40 13.80 6.64 -92.71 -0.62 13.18 16 35 H 0.14 4.18 7.61 -2.91 -0.02 4.16 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 39 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 40 H 0.17 1.25 6.25 -2.91 -0.02 1.23 16 41 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.13 2.89 6.59 -2.39 -0.02 2.88 16 Total: -1.00 -69.40 351.27 2.96 -66.44 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.41 Total: 22.54 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.63 Total: -9.63 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.94 Total: -84.27 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.98 Total: -41.34 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.83 Total: 46.26 kcal Total: -69.40 2.96 -66.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.037 kcal (2) G-P(sol) polarization free energy of solvation -69.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds