Wall clock time and date at job start Tue Mar 31 2020 12:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46918 * 2 1 4 4 H 1.09009 * 109.47154 * 54.54406 * 3 2 1 5 5 C 1.50701 * 109.47547 * 174.54265 * 3 2 1 6 6 H 1.07995 * 120.00107 * 119.99752 * 5 3 2 7 7 C 1.37883 * 119.99892 * 300.00374 * 5 3 2 8 8 N 1.31519 * 119.99673 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47518 * 90.00117 * 9 7 5 11 11 H 1.48504 * 109.47163 * 209.99760 * 9 7 5 12 12 H 1.48501 * 109.47215 * 329.99585 * 9 7 5 13 13 N 1.46897 * 109.47091 * 294.54370 * 3 2 1 14 14 C 1.46908 * 111.00017 * 154.44282 * 13 3 2 15 15 C 1.50695 * 109.47047 * 174.76205 * 14 13 3 16 16 C 1.38294 * 119.97451 * 269.72259 * 15 14 13 17 17 C 1.38242 * 120.11256 * 179.72469 * 16 15 14 18 18 C 1.38175 * 120.05524 * 0.55517 * 17 16 15 19 19 C 1.38711 * 119.93806 * 359.72368 * 18 17 16 20 20 O 1.35912 * 120.04869 * 179.97438 * 19 18 17 21 21 C 1.42893 * 117.00059 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47251 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47059 * 59.99794 * 22 21 20 24 24 F 1.39895 * 109.47456 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.47067 * 300.00234 * 22 21 20 26 26 C 1.38128 * 119.97361 * 90.00615 * 15 14 13 27 27 H 1.09005 * 109.46835 * 185.91599 * 1 2 3 28 28 H 1.08995 * 109.47523 * 305.90644 * 1 2 3 29 29 H 1.08998 * 109.47479 * 65.91692 * 1 2 3 30 30 H 1.09002 * 109.47522 * 239.99994 * 2 1 3 31 31 H 1.09002 * 109.47424 * 119.99731 * 2 1 3 32 32 H 0.97002 * 119.99593 * 179.97438 * 8 7 5 33 33 H 1.00895 * 111.00538 * 30.49149 * 13 3 2 34 34 H 1.08996 * 109.47092 * 294.76180 * 14 13 3 35 35 H 1.09002 * 109.47091 * 54.76468 * 14 13 3 36 36 H 1.07997 * 119.93826 * 359.97438 * 16 15 14 37 37 H 1.08000 * 119.97561 * 180.25781 * 17 16 15 38 38 H 1.07993 * 120.03088 * 179.74613 * 18 17 16 39 39 H 1.08998 * 109.47844 * 300.00091 * 21 20 19 40 40 H 1.09002 * 109.47381 * 60.00046 * 21 20 19 41 41 H 1.07999 * 120.02517 * 359.96699 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5989 1.9838 0.8372 5 6 3.5408 1.4448 0.1351 6 1 4.1519 1.8873 -0.6376 7 6 4.1340 0.8818 1.2453 8 7 3.3897 0.3433 2.1864 9 14 5.9944 0.8840 1.4124 10 1 6.4269 2.1188 2.1150 11 1 6.4228 -0.3050 2.1923 12 1 6.6127 0.8399 0.0630 13 7 1.6607 2.0959 -1.2598 14 6 1.5677 3.5522 -1.0904 15 6 1.3043 4.1975 -2.4265 16 6 2.3630 4.5955 -3.2222 17 6 2.1247 5.1826 -4.4509 18 6 0.8274 5.3836 -4.8819 19 6 -0.2362 4.9905 -4.0830 20 8 -1.5132 5.1876 -4.5045 21 6 -1.6869 5.8048 -5.7815 22 6 -3.1806 5.9419 -6.0828 23 9 -3.7847 6.7304 -5.0976 24 9 -3.3507 6.5456 -7.3332 25 9 -3.7725 4.6742 -6.0931 26 6 0.0056 4.3963 -2.8528 27 1 -0.3633 -1.0223 0.1059 28 1 -0.3634 0.6026 0.8323 29 1 -0.3634 0.4193 -0.9382 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8070 -0.0531 2.9673 33 1 0.7965 1.7176 -1.6176 34 1 0.7522 3.7870 -0.4064 35 1 2.5047 3.9311 -0.6823 36 1 3.3777 4.4438 -2.8849 37 1 2.9532 5.4889 -5.0724 38 1 0.6417 5.8460 -5.8400 39 1 -1.2254 6.7923 -5.7737 40 1 -1.2167 5.1902 -6.5491 41 1 -0.8209 4.0890 -2.2292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184089237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:21 Heat of formation + Delta-G solvation = -171.388178 kcal Electronic energy + Delta-G solvation = -25975.061924 eV Core-core repulsion = 21633.020420 eV Total energy + Delta-G solvation = -4342.041504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.50723 -48.07079 -47.94470 -40.35434 -38.01501 -36.15466 -32.99697 -31.63128 -31.41488 -29.89847 -29.19604 -26.73920 -24.85065 -23.79934 -22.64109 -22.45122 -20.94498 -19.58629 -19.03515 -19.01569 -18.17354 -17.61387 -16.32548 -16.17625 -15.96736 -15.71049 -14.89779 -14.84768 -14.77149 -14.46294 -14.41250 -14.27278 -14.12223 -14.12015 -13.89369 -13.44039 -13.11909 -12.90257 -12.58081 -12.26165 -12.22778 -11.99540 -11.51664 -11.42077 -11.21581 -10.99016 -10.94866 -10.77486 -10.63098 -9.97201 -9.72465 -9.64593 -9.13054 -8.75550 -8.35964 -8.25241 -7.26574 -5.97812 -4.02107 1.36041 1.47141 1.89167 2.72851 3.29960 3.31283 3.38311 3.42464 3.51679 3.80830 3.95702 4.40972 4.44100 4.48966 4.79049 4.80280 5.17758 5.29120 5.34484 5.45550 5.52670 5.69810 5.90891 6.10636 6.16168 6.16952 6.21294 6.39157 6.44888 6.48981 6.67116 6.83738 6.87237 7.06868 7.16405 7.19575 7.46554 7.76865 7.90098 8.25537 8.37570 8.72287 9.05548 9.62875 11.07590 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.002539 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.085117 B =11023.892386 C =11889.360754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.100 3.900 15 C -0.022 4.022 16 C -0.125 4.125 17 C -0.083 4.083 18 C -0.216 4.216 19 C 0.117 3.883 20 O -0.303 6.303 21 C 0.016 3.984 22 C 0.465 3.535 23 F -0.174 7.174 24 F -0.174 7.174 25 F -0.173 7.173 26 C -0.140 4.140 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.259 0.741 33 H 0.319 0.681 34 H 0.027 0.973 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 12.009 -16.192 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.311 5.311 14 C -0.029 4.029 15 C -0.023 4.023 16 C -0.144 4.144 17 C -0.101 4.101 18 C -0.235 4.235 19 C 0.073 3.927 20 O -0.217 6.217 21 C -0.062 4.062 22 C 0.410 3.590 23 F -0.155 7.155 24 F -0.155 7.155 25 F -0.154 7.154 26 C -0.159 4.159 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.543 11.873 -16.136 22.191 hybrid contribution -0.002 0.132 0.353 0.377 sum -9.545 12.005 -15.783 22.008 Atomic orbital electron populations 1.21886 0.99570 0.99797 0.99562 1.21765 0.91251 1.00246 1.03122 1.19190 0.95540 0.90024 0.84098 0.97939 1.21203 0.91187 1.36567 1.04279 0.92019 1.24966 0.98116 0.95627 0.95862 1.69874 1.34721 1.39413 1.09590 0.86549 0.85768 0.77348 0.78030 1.20892 1.21385 1.19904 1.60723 1.36358 1.00820 1.33203 1.20869 1.01267 0.90569 0.90215 1.19974 0.91378 0.94135 0.96810 1.21116 0.99706 0.99357 0.94209 1.20918 0.95675 0.97474 0.96050 1.21077 0.93185 1.08343 1.00875 1.18798 0.81358 0.98079 0.94419 1.86022 1.26173 1.76660 1.32867 1.23721 0.91073 1.02590 0.88768 1.20037 0.90155 0.74361 0.74419 1.93239 1.85662 1.74610 1.61987 1.93220 1.96137 1.83753 1.42426 1.93244 1.86115 1.39960 1.96093 1.20337 0.97508 1.03379 0.94646 0.94344 0.93869 0.94587 0.93998 0.88199 0.93065 0.86388 0.95449 0.89430 0.85210 0.85789 0.86021 0.87480 0.87423 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.64 37.16 0.36 -2.54 16 2 C -0.13 -2.91 5.36 -26.73 -0.14 -3.05 16 3 C 0.22 5.29 2.02 -68.87 -0.14 5.15 16 4 H 0.00 0.08 7.85 -51.92 -0.41 -0.33 16 5 C -0.49 -13.26 8.57 -34.44 -0.30 -13.56 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.14 11.29 55.43 0.63 -24.51 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.68 -13.99 6.26 -109.22 -0.68 -14.68 16 14 C 0.10 1.81 5.58 -4.97 -0.03 1.78 16 15 C -0.02 -0.34 5.44 -104.64 -0.57 -0.91 16 16 C -0.13 -1.77 9.70 -39.56 -0.38 -2.16 16 17 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 18 C -0.22 -2.35 9.04 -39.43 -0.36 -2.71 16 19 C 0.12 1.48 6.69 -39.22 -0.26 1.21 16 20 O -0.30 -3.51 10.02 -19.46 -0.20 -3.70 16 21 C 0.02 0.12 4.70 37.16 0.17 0.30 16 22 C 0.46 4.01 3.32 37.16 0.12 4.14 16 23 F -0.17 -1.76 17.26 2.25 0.04 -1.72 16 24 F -0.17 -1.38 17.32 2.25 0.04 -1.34 16 25 F -0.17 -1.79 17.26 2.25 0.04 -1.75 16 26 C -0.14 -1.99 9.64 -39.43 -0.38 -2.37 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.62 6.65 -51.93 -0.35 0.28 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 33 H 0.32 6.13 6.63 -39.29 -0.26 5.87 16 34 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.09 1.70 7.88 -51.93 -0.41 1.29 16 36 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 0.94 6.30 -52.49 -0.33 0.61 16 39 H 0.11 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.11 0.62 7.66 -51.93 -0.40 0.22 16 41 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -28.92 354.66 -7.56 -36.48 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.36 Total: 4.46 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.39 Total: -14.69 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.06 Total: -39.18 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.70 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.12 Total: -4.81 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.92 -7.56 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.907 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds