Wall clock time and date at job start Tue Mar 31 2020 12:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46918 * 2 1 4 4 H 1.09009 * 109.47154 * 54.54406 * 3 2 1 5 5 C 1.50701 * 109.47547 * 174.54265 * 3 2 1 6 6 H 1.07995 * 120.00107 * 119.99752 * 5 3 2 7 7 C 1.37883 * 119.99892 * 300.00374 * 5 3 2 8 8 N 1.31519 * 119.99673 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47518 * 90.00117 * 9 7 5 11 11 H 1.48504 * 109.47163 * 209.99760 * 9 7 5 12 12 H 1.48501 * 109.47215 * 329.99585 * 9 7 5 13 13 N 1.46897 * 109.47091 * 294.54370 * 3 2 1 14 14 C 1.46908 * 111.00017 * 154.44282 * 13 3 2 15 15 C 1.50695 * 109.47047 * 174.76205 * 14 13 3 16 16 C 1.38294 * 119.97451 * 269.72259 * 15 14 13 17 17 C 1.38242 * 120.11256 * 179.72469 * 16 15 14 18 18 C 1.38175 * 120.05524 * 0.55517 * 17 16 15 19 19 C 1.38711 * 119.93806 * 359.72368 * 18 17 16 20 20 O 1.35912 * 120.04869 * 179.97438 * 19 18 17 21 21 C 1.42893 * 117.00059 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.47251 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47059 * 59.99794 * 22 21 20 24 24 F 1.39895 * 109.47456 * 180.02562 * 22 21 20 25 25 F 1.39900 * 109.47067 * 300.00234 * 22 21 20 26 26 C 1.38128 * 119.97361 * 90.00615 * 15 14 13 27 27 H 1.09005 * 109.46835 * 185.91599 * 1 2 3 28 28 H 1.08995 * 109.47523 * 305.90644 * 1 2 3 29 29 H 1.08998 * 109.47479 * 65.91692 * 1 2 3 30 30 H 1.09002 * 109.47522 * 239.99994 * 2 1 3 31 31 H 1.09002 * 109.47424 * 119.99731 * 2 1 3 32 32 H 0.97002 * 119.99593 * 179.97438 * 8 7 5 33 33 H 1.00895 * 111.00538 * 30.49149 * 13 3 2 34 34 H 1.08996 * 109.47092 * 294.76180 * 14 13 3 35 35 H 1.09002 * 109.47091 * 54.76468 * 14 13 3 36 36 H 1.07997 * 119.93826 * 359.97438 * 16 15 14 37 37 H 1.08000 * 119.97561 * 180.25781 * 17 16 15 38 38 H 1.07993 * 120.03088 * 179.74613 * 18 17 16 39 39 H 1.08998 * 109.47844 * 300.00091 * 21 20 19 40 40 H 1.09002 * 109.47381 * 60.00046 * 21 20 19 41 41 H 1.07999 * 120.02517 * 359.96699 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5989 1.9838 0.8372 5 6 3.5408 1.4448 0.1351 6 1 4.1519 1.8873 -0.6376 7 6 4.1340 0.8818 1.2453 8 7 3.3897 0.3433 2.1864 9 14 5.9944 0.8840 1.4124 10 1 6.4269 2.1188 2.1150 11 1 6.4228 -0.3050 2.1923 12 1 6.6127 0.8399 0.0630 13 7 1.6607 2.0959 -1.2598 14 6 1.5677 3.5522 -1.0904 15 6 1.3043 4.1975 -2.4265 16 6 2.3630 4.5955 -3.2222 17 6 2.1247 5.1826 -4.4509 18 6 0.8274 5.3836 -4.8819 19 6 -0.2362 4.9905 -4.0830 20 8 -1.5132 5.1876 -4.5045 21 6 -1.6869 5.8048 -5.7815 22 6 -3.1806 5.9419 -6.0828 23 9 -3.7847 6.7304 -5.0976 24 9 -3.3507 6.5456 -7.3332 25 9 -3.7725 4.6742 -6.0931 26 6 0.0056 4.3963 -2.8528 27 1 -0.3633 -1.0223 0.1059 28 1 -0.3634 0.6026 0.8323 29 1 -0.3634 0.4193 -0.9382 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8070 -0.0531 2.9673 33 1 0.7965 1.7176 -1.6176 34 1 0.7522 3.7870 -0.4064 35 1 2.5047 3.9311 -0.6823 36 1 3.3777 4.4438 -2.8849 37 1 2.9532 5.4889 -5.0724 38 1 0.6417 5.8460 -5.8400 39 1 -1.2254 6.7923 -5.7737 40 1 -1.2167 5.1902 -6.5491 41 1 -0.8209 4.0890 -2.2292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184089237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:21 Heat of formation + Delta-G solvation = -187.689513 kcal Electronic energy + Delta-G solvation = -25975.768803 eV Core-core repulsion = 21633.020420 eV Total energy + Delta-G solvation = -4342.748383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.19253 -48.73537 -48.67907 -41.26193 -39.10433 -37.78458 -34.66908 -33.37177 -32.23698 -31.22081 -30.06961 -28.57008 -26.24981 -24.76886 -24.19731 -23.50438 -21.99804 -21.44253 -19.78086 -19.72298 -18.90077 -18.50471 -18.36036 -16.96519 -16.90631 -16.80655 -16.69148 -15.94844 -15.70334 -15.60139 -15.49829 -15.31724 -15.11253 -14.84362 -14.82757 -14.67323 -14.37469 -14.14677 -13.97322 -13.62488 -13.48754 -13.13067 -12.92759 -12.84550 -12.70835 -12.55804 -12.36669 -12.16763 -11.96676 -11.94007 -11.53248 -11.37987 -11.04379 -10.42357 -9.82646 -9.22234 -9.01865 -8.05470 -6.17466 0.35439 0.47904 1.20609 1.42690 1.44046 1.54590 2.01419 2.45309 2.66649 2.77336 2.90911 3.19987 3.28132 3.74203 3.80722 3.96336 3.96875 3.99699 4.16124 4.33776 4.45328 4.48205 4.54541 4.56452 4.69206 4.77754 4.85770 5.09332 5.10682 5.23012 5.25262 5.36324 5.49706 5.58292 5.69034 5.75294 5.79066 5.89884 6.26748 6.35963 6.48028 6.94724 6.97022 7.51426 8.97947 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.002539 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.085117 B =11023.892386 C =11889.360754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.224 3.776 4 H -0.030 1.030 5 C -0.510 4.510 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.678 5.678 14 C 0.106 3.894 15 C -0.040 4.040 16 C -0.144 4.144 17 C -0.076 4.076 18 C -0.202 4.202 19 C 0.119 3.881 20 O -0.321 6.321 21 C 0.010 3.990 22 C 0.465 3.535 23 F -0.185 7.185 24 F -0.168 7.168 25 F -0.186 7.186 26 C -0.155 4.155 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.260 0.740 33 H 0.327 0.673 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 13.116 -18.828 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.116 3.884 4 H -0.012 1.012 5 C -0.549 4.549 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.310 5.310 14 C -0.023 4.023 15 C -0.040 4.040 16 C -0.162 4.162 17 C -0.093 4.093 18 C -0.221 4.221 19 C 0.075 3.925 20 O -0.235 6.235 21 C -0.066 4.066 22 C 0.411 3.589 23 F -0.167 7.167 24 F -0.150 7.150 25 F -0.167 7.167 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.174 0.826 38 H 0.182 0.818 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.450 12.993 -18.793 24.724 hybrid contribution -0.120 -0.134 1.077 1.092 sum -9.570 12.859 -17.716 23.891 Atomic orbital electron populations 1.21754 0.96394 1.01154 1.00422 1.21592 0.94116 0.98966 1.01259 1.18966 0.94236 0.90638 0.84529 1.01246 1.21467 0.92658 1.36538 1.04229 0.92962 1.25701 1.02353 0.95331 0.95589 1.70008 1.36292 1.39919 1.09920 0.85580 0.80703 0.77424 0.78049 1.20338 1.21010 1.19443 1.60610 1.36976 1.02302 1.31115 1.20735 1.00009 0.89143 0.92402 1.19633 0.92579 0.95974 0.95838 1.21172 0.98870 1.00624 0.95579 1.21246 0.97225 0.95916 0.94948 1.21509 0.92043 1.06620 1.01891 1.18781 0.82359 0.97436 0.93900 1.85979 1.25611 1.77030 1.34889 1.24072 0.90359 1.04490 0.87689 1.20219 0.90654 0.73694 0.74334 1.93218 1.86023 1.74881 1.62566 1.93233 1.96155 1.83583 1.41980 1.93221 1.86492 1.40872 1.96151 1.20290 0.96719 1.04486 0.95937 0.92397 0.94462 0.92544 0.94460 0.91289 0.93093 0.85444 0.95740 0.91592 0.86182 0.82640 0.81830 0.84567 0.84760 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 9.64 71.98 0.69 -4.63 16 2 C -0.12 -5.74 5.36 30.59 0.16 -5.57 16 3 C 0.22 11.29 2.02 44.17 0.09 11.38 16 4 H -0.03 -1.68 7.85 -2.38 -0.02 -1.70 16 5 C -0.51 -28.30 8.57 25.60 0.22 -28.08 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.46 5.29 84.66 0.45 0.91 16 8 N -0.92 -53.09 11.29 21.45 0.24 -52.84 16 9 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.68 -28.75 6.26 -499.46 -3.12 -31.87 16 14 C 0.11 4.02 5.58 85.55 0.48 4.50 16 15 C -0.04 -1.23 5.44 -19.88 -0.11 -1.34 16 16 C -0.14 -3.96 9.70 22.28 0.22 -3.75 16 17 C -0.08 -1.52 10.04 22.26 0.22 -1.29 16 18 C -0.20 -3.56 9.04 22.37 0.20 -3.36 16 19 C 0.12 2.71 6.69 22.50 0.15 2.86 16 20 O -0.32 -6.60 10.02 -92.56 -0.93 -7.53 16 21 C 0.01 0.12 4.70 71.98 0.34 0.46 16 22 C 0.47 6.95 3.32 71.98 0.24 7.19 16 23 F -0.19 -3.47 17.26 44.97 0.78 -2.69 16 24 F -0.17 -2.23 17.32 44.97 0.78 -1.45 16 25 F -0.19 -3.56 17.26 44.97 0.78 -2.78 16 26 C -0.16 -4.35 9.64 22.36 0.22 -4.13 16 27 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.90 6.65 -2.39 -0.02 1.89 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 3.73 5.94 -2.39 -0.01 3.71 16 32 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.33 12.72 6.63 -89.70 -0.59 12.12 16 34 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.07 2.73 7.88 -2.39 -0.02 2.71 16 36 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.16 1.48 6.30 -2.91 -0.02 1.46 16 39 H 0.14 0.82 7.66 -2.39 -0.02 0.80 16 40 H 0.13 0.88 7.66 -2.39 -0.02 0.86 16 41 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -64.66 354.66 4.58 -60.08 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.46 Total: 17.97 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 3.57 Total: -24.88 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.88 Total: -84.71 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.93 Total: -7.53 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 2.33 Total: -6.92 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -64.66 4.58 -60.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.612 kcal (2) G-P(sol) polarization free energy of solvation -64.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds